EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000100264 (Gene tree)
Gene ID: 402955
Gene Symbol: thumpd1
Alias: zgc:77221
Full Name: THUMP domain containing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 3901 bases
Position: chr1:58981985-58985885
Accession: ZDB-GENE-040426-1805
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134792	THUMP	PF02926.17	2.7e-16	1	1
ENSDARP00000137533	THUMP	PF02926.17	4.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000171055	-	1032	-	ENSDARP00000137533	343 (aa)	-	A0A0R4IML8
ENSDART00000170646	-	1361	-	ENSDARP00000134792	343 (aa)	-	A0A0R4IIV9

Gene Model

Click here to download ENSDARG00000100264's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000100264's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000100264	thumpd1	99	48.547	ENSG00000066654	THUMPD1	88	48.547	Homo_sapiens
ENSDARG00000100264	thumpd1	94	54.217	ENSAPOG00000008440	thumpd1	97	55.152	Acanthochromis_polyacanthus
ENSDARG00000100264	thumpd1	80	54.480	ENSAMEG00000006257	THUMPD1	75	54.480	Ailuropoda_melanoleuca
ENSDARG00000100264	thumpd1	76	60.806	ENSACIG00000024395	thumpd1	93	56.129	Amphilophus_citrinellus
ENSDARG00000100264	thumpd1	86	57.692	ENSAOCG00000003509	thumpd1	97	58.710	Amphiprion_ocellaris
ENSDARG00000100264	thumpd1	86	57.878	ENSAPEG00000010515	thumpd1	97	58.900	Amphiprion_percula
ENSDARG00000100264	thumpd1	87	56.291	ENSATEG00000004737	thumpd1	95	56.291	Anabas_testudineus
ENSDARG00000100264	thumpd1	69	58.704	ENSAPLG00000015259	THUMPD1	86	59.592	Anas_platyrhynchos
ENSDARG00000100264	thumpd1	86	50.160	ENSACAG00000009625	-	95	52.077	Anolis_carolinensis
ENSDARG00000100264	thumpd1	52	52.747	ENSACAG00000022881	-	98	52.747	Anolis_carolinensis
ENSDARG00000100264	thumpd1	87	41.613	ENSANAG00000027311	-	88	41.368	Aotus_nancymaae
ENSDARG00000100264	thumpd1	87	41.158	ENSANAG00000027040	-	86	41.158	Aotus_nancymaae
ENSDARG00000100264	thumpd1	92	50.456	ENSANAG00000026882	-	90	50.459	Aotus_nancymaae
ENSDARG00000100264	thumpd1	83	57.432	ENSACLG00000004830	thumpd1	98	54.859	Astatotilapia_calliptera
ENSDARG00000100264	thumpd1	100	54.755	ENSAMXG00000012356	thumpd1	100	54.755	Astyanax_mexicanus
ENSDARG00000100264	thumpd1	91	50.789	ENSBTAG00000047673	THUMPD1	85	50.789	Bos_taurus
ENSDARG00000100264	thumpd1	92	50.456	ENSCJAG00000009499	THUMPD1	90	50.459	Callithrix_jacchus
ENSDARG00000100264	thumpd1	82	53.608	ENSCAFG00000017985	THUMPD1	79	53.448	Canis_familiaris
ENSDARG00000100264	thumpd1	82	53.608	ENSCAFG00020021861	THUMPD1	79	53.448	Canis_lupus_dingo
ENSDARG00000100264	thumpd1	91	50.938	ENSCHIG00000010134	THUMPD1	85	50.000	Capra_hircus
ENSDARG00000100264	thumpd1	76	56.877	ENSTSYG00000011537	THUMPD1	74	55.926	Carlito_syrichta
ENSDARG00000100264	thumpd1	93	49.847	ENSCPOG00000008919	-	88	49.691	Cavia_porcellus
ENSDARG00000100264	thumpd1	93	49.847	ENSCPOG00000023684	-	88	49.691	Cavia_porcellus
ENSDARG00000100264	thumpd1	87	51.118	ENSCCAG00000030205	THUMPD1	88	51.125	Cebus_capucinus
ENSDARG00000100264	thumpd1	93	46.605	ENSCCAG00000019379	-	76	46.584	Cebus_capucinus
ENSDARG00000100264	thumpd1	73	46.792	ENSCATG00000020844	-	74	46.792	Cercocebus_atys
ENSDARG00000100264	thumpd1	99	47.965	ENSCATG00000040309	THUMPD1	88	47.965	Cercocebus_atys
ENSDARG00000100264	thumpd1	83	52.759	ENSCLAG00000016508	THUMPD1	76	52.431	Chinchilla_lanigera
ENSDARG00000100264	thumpd1	92	40.181	ENSCSAG00000009860	-	72	40.240	Chlorocebus_sabaeus
ENSDARG00000100264	thumpd1	99	47.965	ENSCSAG00000007610	THUMPD1	88	47.965	Chlorocebus_sabaeus
ENSDARG00000100264	thumpd1	72	59.921	ENSCHOG00000005587	THUMPD1	68	59.600	Choloepus_hoffmanni
ENSDARG00000100264	thumpd1	83	54.762	ENSCPBG00000019055	THUMPD1	82	54.762	Chrysemys_picta_bellii
ENSDARG00000100264	thumpd1	80	47.101	ENSCANG00000038770	THUMPD1	79	47.170	Colobus_angolensis_palliatus
ENSDARG00000100264	thumpd1	84	43.960	ENSCANG00000035822	-	97	43.960	Colobus_angolensis_palliatus
ENSDARG00000100264	thumpd1	98	48.688	ENSCGRG00001014829	Thumpd1	92	48.538	Cricetulus_griseus_chok1gshd
ENSDARG00000100264	thumpd1	98	48.688	ENSCGRG00000000060	Thumpd1	92	48.538	Cricetulus_griseus_crigri
ENSDARG00000100264	thumpd1	87	56.311	ENSCSEG00000002041	thumpd1	96	56.311	Cynoglossus_semilaevis
ENSDARG00000100264	thumpd1	79	61.290	ENSCVAG00000014960	thumpd1	86	61.511	Cyprinodon_variegatus
ENSDARG00000100264	thumpd1	87	51.485	ENSDNOG00000043510	THUMPD1	83	51.163	Dasypus_novemcinctus
ENSDARG00000100264	thumpd1	67	60.084	ENSDORG00000028216	Thumpd1	68	59.426	Dipodomys_ordii
ENSDARG00000100264	thumpd1	78	30.822	FBgn0035532	CG15014	90	30.822	Drosophila_melanogaster
ENSDARG00000100264	thumpd1	75	52.290	ENSETEG00000002763	THUMPD1	60	52.290	Echinops_telfairi
ENSDARG00000100264	thumpd1	74	43.750	ENSEBUG00000011011	THUMPD1	80	41.528	Eptatretus_burgeri
ENSDARG00000100264	thumpd1	74	57.197	ENSECAG00000005354	THUMPD1	71	56.154	Equus_caballus
ENSDARG00000100264	thumpd1	87	52.159	ENSEEUG00000011256	THUMPD1	68	52.159	Erinaceus_europaeus
ENSDARG00000100264	thumpd1	73	68.627	ENSELUG00000013612	thumpd1	61	68.093	Esox_lucius
ENSDARG00000100264	thumpd1	94	51.057	ENSFCAG00000039296	THUMPD1	91	50.742	Felis_catus
ENSDARG00000100264	thumpd1	65	58.369	ENSFALG00000014029	THUMPD1	98	51.930	Ficedula_albicollis
ENSDARG00000100264	thumpd1	74	63.740	ENSFHEG00000013319	thumpd1	76	63.740	Fundulus_heteroclitus
ENSDARG00000100264	thumpd1	78	62.731	ENSGMOG00000003369	thumpd1	86	62.731	Gadus_morhua
ENSDARG00000100264	thumpd1	75	64.639	ENSGAFG00000011000	thumpd1	82	64.639	Gambusia_affinis
ENSDARG00000100264	thumpd1	79	59.567	ENSGACG00000019511	thumpd1	85	59.567	Gasterosteus_aculeatus
ENSDARG00000100264	thumpd1	72	59.216	ENSGAGG00000008225	THUMPD1	96	51.852	Gopherus_agassizii
ENSDARG00000100264	thumpd1	56	46.667	ENSGGOG00000043232	-	64	46.667	Gorilla_gorilla
ENSDARG00000100264	thumpd1	92	49.847	ENSGGOG00000005231	-	72	49.847	Gorilla_gorilla
ENSDARG00000100264	thumpd1	83	58.503	ENSHBUG00000017996	thumpd1	98	55.172	Haplochromis_burtoni
ENSDARG00000100264	thumpd1	55	46.561	ENSHGLG00000000952	-	78	46.561	Heterocephalus_glaber_female
ENSDARG00000100264	thumpd1	92	48.930	ENSHGLG00000011001	-	85	48.765	Heterocephalus_glaber_female
ENSDARG00000100264	thumpd1	55	46.561	ENSHGLG00100010577	-	78	46.561	Heterocephalus_glaber_male
ENSDARG00000100264	thumpd1	92	49.541	ENSHGLG00100016023	THUMPD1	85	49.383	Heterocephalus_glaber_male
ENSDARG00000100264	thumpd1	66	59.565	ENSHCOG00000008618	thumpd1	54	58.079	Hippocampus_comes
ENSDARG00000100264	thumpd1	85	60.870	ENSIPUG00000012500	thumpd1	77	58.462	Ictalurus_punctatus
ENSDARG00000100264	thumpd1	81	51.961	ENSSTOG00000007011	THUMPD1	83	51.961	Ictidomys_tridecemlineatus
ENSDARG00000100264	thumpd1	69	57.261	ENSJJAG00000004295	-	78	52.518	Jaculus_jaculus
ENSDARG00000100264	thumpd1	79	48.746	ENSKMAG00000009545	thumpd1	84	44.092	Kryptolebias_marmoratus
ENSDARG00000100264	thumpd1	73	62.791	ENSLBEG00000009349	thumpd1	97	54.232	Labrus_bergylta
ENSDARG00000100264	thumpd1	76	56.271	ENSLACG00000005833	THUMPD1	82	55.705	Latimeria_chalumnae
ENSDARG00000100264	thumpd1	88	53.896	ENSLOCG00000000854	thumpd1	97	54.221	Lepisosteus_oculatus
ENSDARG00000100264	thumpd1	67	60.851	ENSLAFG00000025838	THUMPD1	66	60.851	Loxodonta_africana
ENSDARG00000100264	thumpd1	66	47.479	ENSMFAG00000041474	-	76	47.479	Macaca_fascicularis
ENSDARG00000100264	thumpd1	99	47.965	ENSMFAG00000036996	THUMPD1	88	47.965	Macaca_fascicularis
ENSDARG00000100264	thumpd1	99	47.965	ENSMMUG00000004225	THUMPD1	88	47.965	Macaca_mulatta
ENSDARG00000100264	thumpd1	66	47.479	ENSMMUG00000038414	-	76	47.479	Macaca_mulatta
ENSDARG00000100264	thumpd1	99	47.965	ENSMNEG00000020726	THUMPD1	88	47.965	Macaca_nemestrina
ENSDARG00000100264	thumpd1	64	48.684	ENSMNEG00000038856	-	72	48.684	Macaca_nemestrina
ENSDARG00000100264	thumpd1	66	47.679	ENSMLEG00000030012	-	75	47.679	Mandrillus_leucophaeus
ENSDARG00000100264	thumpd1	92	49.847	ENSMLEG00000036436	THUMPD1	90	49.847	Mandrillus_leucophaeus
ENSDARG00000100264	thumpd1	92	54.747	ENSMAMG00000006858	thumpd1	98	55.063	Mastacembelus_armatus
ENSDARG00000100264	thumpd1	83	58.503	ENSMZEG00005013693	thumpd1	98	55.172	Maylandia_zebra
ENSDARG00000100264	thumpd1	52	61.582	ENSMGAG00000010340	THUMPD1	83	61.628	Meleagris_gallopavo
ENSDARG00000100264	thumpd1	98	48.397	ENSMAUG00000013306	Thumpd1	92	47.953	Mesocricetus_auratus
ENSDARG00000100264	thumpd1	74	47.082	ENSMICG00000030865	-	72	47.082	Microcebus_murinus
ENSDARG00000100264	thumpd1	87	53.289	ENSMICG00000038483	-	81	53.289	Microcebus_murinus
ENSDARG00000100264	thumpd1	72	59.127	ENSMOCG00000003447	Thumpd1	69	57.937	Microtus_ochrogaster
ENSDARG00000100264	thumpd1	74	65.116	ENSMMOG00000011323	thumpd1	78	64.341	Mola_mola
ENSDARG00000100264	thumpd1	93	51.964	ENSMODG00000024776	-	93	51.429	Monodelphis_domestica
ENSDARG00000100264	thumpd1	93	51.807	ENSMODG00000006971	-	92	51.143	Monodelphis_domestica
ENSDARG00000100264	thumpd1	73	61.868	ENSMALG00000019522	thumpd1	90	58.363	Monopterus_albus
ENSDARG00000100264	thumpd1	72	58.333	MGP_CAROLIEiJ_G0030382	Thumpd1	70	58.566	Mus_caroli
ENSDARG00000100264	thumpd1	72	59.127	ENSMUSG00000030942	Thumpd1	70	58.964	Mus_musculus
ENSDARG00000100264	thumpd1	99	49.128	MGP_PahariEiJ_G0013593	Thumpd1	89	49.128	Mus_pahari
ENSDARG00000100264	thumpd1	67	62.661	ENSMLUG00000010547	THUMPD1	71	59.524	Myotis_lucifugus
ENSDARG00000100264	thumpd1	94	50.000	ENSNGAG00000018643	Thumpd1	88	50.000	Nannospalax_galili
ENSDARG00000100264	thumpd1	83	59.247	ENSNBRG00000006987	thumpd1	86	59.247	Neolamprologus_brichardi
ENSDARG00000100264	thumpd1	92	49.847	ENSNLEG00000012369	THUMPD1	90	49.847	Nomascus_leucogenys
ENSDARG00000100264	thumpd1	67	59.072	ENSODEG00000012360	THUMPD1	66	58.974	Octodon_degus
ENSDARG00000100264	thumpd1	73	62.791	ENSONIG00000000146	thumpd1	91	63.566	Oreochromis_niloticus
ENSDARG00000100264	thumpd1	93	50.920	ENSOANG00000014297	THUMPD1	90	50.613	Ornithorhynchus_anatinus
ENSDARG00000100264	thumpd1	54	49.462	ENSOCUG00000025354	-	85	49.462	Oryctolagus_cuniculus
ENSDARG00000100264	thumpd1	86	52.131	ENSOCUG00000009895	-	84	52.131	Oryctolagus_cuniculus
ENSDARG00000100264	thumpd1	73	59.608	ENSORLG00000027557	thumpd1	83	59.608	Oryzias_latipes
ENSDARG00000100264	thumpd1	73	59.843	ENSORLG00020010206	thumpd1	83	59.843	Oryzias_latipes_hni
ENSDARG00000100264	thumpd1	73	59.449	ENSORLG00015009581	thumpd1	83	59.449	Oryzias_latipes_hsok
ENSDARG00000100264	thumpd1	73	59.843	ENSOMEG00000019361	thumpd1	78	59.843	Oryzias_melastigma
ENSDARG00000100264	thumpd1	74	58.462	ENSOGAG00000026723	THUMPD1	71	58.462	Otolemur_garnettii
ENSDARG00000100264	thumpd1	91	50.789	ENSOARG00000013107	THUMPD1	85	50.789	Ovis_aries
ENSDARG00000100264	thumpd1	73	58.498	ENSPPAG00000033818	-	72	49.847	Pan_paniscus
ENSDARG00000100264	thumpd1	85	41.667	ENSPPAG00000001653	-	94	41.667	Pan_paniscus
ENSDARG00000100264	thumpd1	94	51.360	ENSPPRG00000014118	-	91	51.335	Panthera_pardus
ENSDARG00000100264	thumpd1	94	49.850	ENSPTIG00000013856	-	91	49.853	Panthera_tigris_altaica
ENSDARG00000100264	thumpd1	85	40.000	ENSPTRG00000046073	-	90	40.000	Pan_troglodytes
ENSDARG00000100264	thumpd1	92	50.153	ENSPTRG00000007848	THUMPD1	72	50.153	Pan_troglodytes
ENSDARG00000100264	thumpd1	66	47.059	ENSPANG00000034881	-	76	47.059	Papio_anubis
ENSDARG00000100264	thumpd1	99	47.965	ENSPANG00000025507	THUMPD1	88	47.965	Papio_anubis
ENSDARG00000100264	thumpd1	73	65.625	ENSPKIG00000014491	thumpd1	98	55.589	Paramormyrops_kingsleyae
ENSDARG00000100264	thumpd1	70	60.494	ENSPSIG00000012430	THUMPD1	84	60.494	Pelodiscus_sinensis
ENSDARG00000100264	thumpd1	79	62.590	ENSPMGG00000014479	thumpd1	98	62.590	Periophthalmus_magnuspinnatus
ENSDARG00000100264	thumpd1	70	38.017	ENSPEMG00000002608	-	99	38.430	Peromyscus_maniculatus_bairdii
ENSDARG00000100264	thumpd1	55	56.684	ENSPMAG00000001389	thumpd1	82	58.140	Petromyzon_marinus
ENSDARG00000100264	thumpd1	80	56.890	ENSPCIG00000029241	THUMPD1	58	55.814	Phascolarctos_cinereus
ENSDARG00000100264	thumpd1	74	66.031	ENSPFOG00000012649	thumpd1	96	58.632	Poecilia_formosa
ENSDARG00000100264	thumpd1	91	57.053	ENSPLAG00000000137	thumpd1	98	57.053	Poecilia_latipinna
ENSDARG00000100264	thumpd1	74	65.900	ENSPMEG00000007750	thumpd1	96	58.170	Poecilia_mexicana
ENSDARG00000100264	thumpd1	72	66.275	ENSPREG00000000144	thumpd1	88	65.000	Poecilia_reticulata
ENSDARG00000100264	thumpd1	79	49.265	ENSPPYG00000007160	-	87	48.485	Pongo_abelii
ENSDARG00000100264	thumpd1	67	51.082	ENSPCAG00000001534	THUMPD1	78	50.901	Procavia_capensis
ENSDARG00000100264	thumpd1	87	53.289	ENSPCOG00000024663	THUMPD1	81	53.289	Propithecus_coquereli
ENSDARG00000100264	thumpd1	92	48.276	ENSPVAG00000005659	-	86	48.276	Pteropus_vampyrus
ENSDARG00000100264	thumpd1	83	58.503	ENSPNYG00000007061	thumpd1	96	55.380	Pundamilia_nyererei
ENSDARG00000100264	thumpd1	83	63.699	ENSPNAG00000024872	thumpd1	97	63.699	Pygocentrus_nattereri
ENSDARG00000100264	thumpd1	59	48.571	ENSRNOG00000014946	AABR07005588.1	94	49.048	Rattus_norvegicus
ENSDARG00000100264	thumpd1	83	44.027	ENSRBIG00000040136	-	99	44.027	Rhinopithecus_bieti
ENSDARG00000100264	thumpd1	99	47.965	ENSRBIG00000040752	THUMPD1	88	47.965	Rhinopithecus_bieti
ENSDARG00000100264	thumpd1	99	47.965	ENSRROG00000042189	THUMPD1	88	47.965	Rhinopithecus_roxellana
ENSDARG00000100264	thumpd1	83	43.686	ENSRROG00000045699	-	99	43.686	Rhinopithecus_roxellana
ENSDARG00000100264	thumpd1	92	50.459	ENSSBOG00000034246	THUMPD1	90	50.459	Saimiri_boliviensis_boliviensis
ENSDARG00000100264	thumpd1	92	50.309	ENSSHAG00000003853	THUMPD1	92	50.000	Sarcophilus_harrisii
ENSDARG00000100264	thumpd1	76	57.303	ENSSFOG00015007512	thumpd1	82	57.678	Scleropages_formosus
ENSDARG00000100264	thumpd1	87	56.908	ENSSMAG00000000723	thumpd1	95	55.911	Scophthalmus_maximus
ENSDARG00000100264	thumpd1	74	63.846	ENSSDUG00000014502	thumpd1	98	55.799	Seriola_dumerili
ENSDARG00000100264	thumpd1	74	64.231	ENSSLDG00000007694	thumpd1	98	56.113	Seriola_lalandi_dorsalis
ENSDARG00000100264	thumpd1	85	52.769	ENSSPUG00000005096	THUMPD1	77	59.231	Sphenodon_punctatus
ENSDARG00000100264	thumpd1	87	57.003	ENSSPAG00000006993	thumpd1	93	58.033	Stegastes_partitus
ENSDARG00000100264	thumpd1	87	51.974	ENSSSCG00000024748	THUMPD1	87	50.462	Sus_scrofa
ENSDARG00000100264	thumpd1	72	58.140	ENSTGUG00000009247	THUMPD1	99	56.364	Taeniopygia_guttata
ENSDARG00000100264	thumpd1	73	63.953	ENSTRUG00000015656	thumpd1	80	63.953	Takifugu_rubripes
ENSDARG00000100264	thumpd1	76	58.394	ENSTNIG00000001584	thumpd1	88	61.278	Tetraodon_nigroviridis
ENSDARG00000100264	thumpd1	88	52.679	ENSTBEG00000005252	THUMPD1	81	52.083	Tupaia_belangeri
ENSDARG00000100264	thumpd1	72	58.566	ENSTTRG00000016435	THUMPD1	68	58.566	Tursiops_truncatus
ENSDARG00000100264	thumpd1	89	50.321	ENSVPAG00000003422	THUMPD1	87	50.321	Vicugna_pacos
ENSDARG00000100264	thumpd1	87	52.649	ENSVVUG00000023241	THUMPD1	81	52.492	Vulpes_vulpes
ENSDARG00000100264	thumpd1	50	58.480	ENSXETG00000005539	thumpd1	68	54.146	Xenopus_tropicalis
ENSDARG00000100264	thumpd1	74	66.284	ENSXMAG00000026052	thumpd1	97	58.252	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0006400	tRNA modification	21873635.	IBA	Process
GO:0006400	tRNA modification	-	IEA	Process