EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000100481 (Gene tree)
Gene ID: 100334020
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 29106 bases
Position: chr10:35584647-35613752
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000140752	EST1	PF10374.9	2.4e-14	1	1
ENSDARP00000140752	EST1_DNA_bind	PF10373.9	5.4e-59	1	1
ENSDARP00000140752	PIN_4	PF13638.6	2.3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000158537	-	5701	XM_005172741	ENSDARP00000140752	1544 (aa)	XP_005172798	A0A0R4IZ84

Gene Model

Click here to download ENSDARG00000100481's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000100481's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000100481	smg6	76	56.672	ENSG00000070366	SMG6	100	61.654	Homo_sapiens
ENSDARG00000100481	smg6	100	56.773	ENSAPOG00000019448	smg6	100	57.898	Acanthochromis_polyacanthus
ENSDARG00000100481	smg6	100	51.415	ENSAMEG00000007632	SMG6	100	50.803	Ailuropoda_melanoleuca
ENSDARG00000100481	smg6	92	58.517	ENSACIG00000012997	smg6	99	58.556	Amphilophus_citrinellus
ENSDARG00000100481	smg6	100	57.022	ENSAOCG00000002630	smg6	100	58.384	Amphiprion_ocellaris
ENSDARG00000100481	smg6	100	56.902	ENSAPEG00000019101	smg6	100	58.253	Amphiprion_percula
ENSDARG00000100481	smg6	100	54.465	ENSATEG00000006483	smg6	100	56.054	Anabas_testudineus
ENSDARG00000100481	smg6	77	51.229	ENSACAG00000011783	SMG6	99	46.937	Anolis_carolinensis
ENSDARG00000100481	smg6	100	50.267	ENSANAG00000035760	SMG6	100	49.601	Aotus_nancymaae
ENSDARG00000100481	smg6	100	55.183	ENSACLG00000005288	smg6	100	56.639	Astatotilapia_calliptera
ENSDARG00000100481	smg6	89	75.524	ENSAMXG00000017326	smg6	98	74.810	Astyanax_mexicanus
ENSDARG00000100481	smg6	100	51.120	ENSBTAG00000000267	SMG6	100	50.338	Bos_taurus
ENSDARG00000100481	smg6	100	50.706	ENSCJAG00000001820	SMG6	100	50.000	Callithrix_jacchus
ENSDARG00000100481	smg6	89	55.687	ENSCAFG00000019260	SMG6	100	50.336	Canis_familiaris
ENSDARG00000100481	smg6	89	55.687	ENSCAFG00020009770	SMG6	100	50.336	Canis_lupus_dingo
ENSDARG00000100481	smg6	100	51.423	ENSCHIG00000021998	SMG6	100	50.708	Capra_hircus
ENSDARG00000100481	smg6	100	50.299	ENSTSYG00000003406	SMG6	100	61.090	Carlito_syrichta
ENSDARG00000100481	smg6	69	55.609	ENSCAPG00000016197	SMG6	69	55.189	Cavia_aperea
ENSDARG00000100481	smg6	91	54.874	ENSCPOG00000014878	SMG6	95	55.085	Cavia_porcellus
ENSDARG00000100481	smg6	100	50.536	ENSCCAG00000035801	SMG6	100	49.967	Cebus_capucinus
ENSDARG00000100481	smg6	91	55.695	ENSCATG00000031956	SMG6	98	54.894	Cercocebus_atys
ENSDARG00000100481	smg6	100	50.402	ENSCLAG00000006748	SMG6	100	49.533	Chinchilla_lanigera
ENSDARG00000100481	smg6	90	56.571	ENSCSAG00000013800	SMG6	96	55.786	Chlorocebus_sabaeus
ENSDARG00000100481	smg6	100	54.266	ENSCPBG00000020369	SMG6	100	53.538	Chrysemys_picta_bellii
ENSDARG00000100481	smg6	77	55.713	ENSCANG00000031764	SMG6	100	61.654	Colobus_angolensis_palliatus
ENSDARG00000100481	smg6	98	46.513	ENSCGRG00000007782	Smg6	99	46.725	Cricetulus_griseus_crigri
ENSDARG00000100481	smg6	100	56.404	ENSCSEG00000012757	smg6	100	55.993	Cynoglossus_semilaevis
ENSDARG00000100481	smg6	100	55.003	ENSCVAG00000012789	smg6	100	55.475	Cyprinodon_variegatus
ENSDARG00000100481	smg6	89	54.751	ENSDNOG00000048283	SMG6	97	54.102	Dasypus_novemcinctus
ENSDARG00000100481	smg6	100	50.513	ENSDORG00000016614	Smg6	99	62.406	Dipodomys_ordii
ENSDARG00000100481	smg6	93	90.244	ENSETEG00000016790	SMG6	93	90.244	Echinops_telfairi
ENSDARG00000100481	smg6	62	48.761	ENSEBUG00000005059	smg6	63	48.071	Eptatretus_burgeri
ENSDARG00000100481	smg6	90	56.003	ENSEASG00005009318	SMG6	98	54.953	Equus_asinus_asinus
ENSDARG00000100481	smg6	99	50.973	ENSECAG00000006519	SMG6	99	50.100	Equus_caballus
ENSDARG00000100481	smg6	87	48.670	ENSEEUG00000003493	SMG6	95	47.638	Erinaceus_europaeus
ENSDARG00000100481	smg6	84	66.000	ENSELUG00000005934	smg6	88	67.687	Esox_lucius
ENSDARG00000100481	smg6	100	51.180	ENSFCAG00000028817	SMG6	100	50.705	Felis_catus
ENSDARG00000100481	smg6	91	55.392	ENSFDAG00000015106	SMG6	99	54.398	Fukomys_damarensis
ENSDARG00000100481	smg6	100	56.090	ENSFHEG00000013282	smg6	100	57.177	Fundulus_heteroclitus
ENSDARG00000100481	smg6	77	55.329	ENSGALG00000003108	SMG6	97	54.961	Gallus_gallus
ENSDARG00000100481	smg6	100	55.576	ENSGAFG00000000379	smg6	100	56.005	Gambusia_affinis
ENSDARG00000100481	smg6	78	63.565	ENSGACG00000020521	smg6	95	63.565	Gasterosteus_aculeatus
ENSDARG00000100481	smg6	79	53.917	ENSGAGG00000025617	SMG6	100	53.344	Gopherus_agassizii
ENSDARG00000100481	smg6	90	56.511	ENSGGOG00000017156	SMG6	98	55.512	Gorilla_gorilla
ENSDARG00000100481	smg6	100	55.629	ENSHBUG00000021311	smg6	100	56.971	Haplochromis_burtoni
ENSDARG00000100481	smg6	90	55.651	ENSHGLG00000012882	SMG6	98	54.773	Heterocephalus_glaber_female
ENSDARG00000100481	smg6	90	55.730	ENSHGLG00100017815	SMG6	98	54.851	Heterocephalus_glaber_male
ENSDARG00000100481	smg6	71	62.735	ENSHCOG00000008761	smg6	88	62.913	Hippocampus_comes
ENSDARG00000100481	smg6	100	62.786	ENSIPUG00000012493	smg6	100	62.105	Ictalurus_punctatus
ENSDARG00000100481	smg6	100	50.711	ENSSTOG00000028127	SMG6	100	50.000	Ictidomys_tridecemlineatus
ENSDARG00000100481	smg6	80	45.240	ENSJJAG00000015367	Smg6	95	43.987	Jaculus_jaculus
ENSDARG00000100481	smg6	100	56.825	ENSKMAG00000000279	smg6	100	57.022	Kryptolebias_marmoratus
ENSDARG00000100481	smg6	100	54.862	ENSLBEG00000002184	smg6	100	55.360	Labrus_bergylta
ENSDARG00000100481	smg6	59	42.710	ENSLACG00000000806	-	99	43.253	Latimeria_chalumnae
ENSDARG00000100481	smg6	100	48.247	ENSLAFG00000001261	SMG6	96	54.702	Loxodonta_africana
ENSDARG00000100481	smg6	90	56.651	ENSMFAG00000003394	SMG6	98	55.208	Macaca_fascicularis
ENSDARG00000100481	smg6	90	56.490	ENSMMUG00000023161	SMG6	98	55.129	Macaca_mulatta
ENSDARG00000100481	smg6	76	54.056	ENSMNEG00000044592	SMG6	98	52.983	Macaca_nemestrina
ENSDARG00000100481	smg6	73	63.071	ENSMLEG00000029353	SMG6	86	62.749	Mandrillus_leucophaeus
ENSDARG00000100481	smg6	100	56.187	ENSMAMG00000020119	smg6	100	56.770	Mastacembelus_armatus
ENSDARG00000100481	smg6	100	55.276	ENSMZEG00005024736	smg6	100	56.732	Maylandia_zebra
ENSDARG00000100481	smg6	67	46.126	ENSMGAG00000005401	-	97	45.973	Meleagris_gallopavo
ENSDARG00000100481	smg6	89	56.230	ENSMICG00000012913	SMG6	100	50.200	Microcebus_murinus
ENSDARG00000100481	smg6	100	57.420	ENSMMOG00000010883	smg6	100	57.974	Mola_mola
ENSDARG00000100481	smg6	100	48.322	ENSMODG00000010622	SMG6	100	54.244	Monodelphis_domestica
ENSDARG00000100481	smg6	100	55.451	ENSMALG00000001106	smg6	100	57.016	Monopterus_albus
ENSDARG00000100481	smg6	100	50.572	MGP_CAROLIEiJ_G0016729	Smg6	92	66.967	Mus_caroli
ENSDARG00000100481	smg6	90	56.115	ENSMUSG00000038290	Smg6	92	68.182	Mus_musculus
ENSDARG00000100481	smg6	100	50.236	MGP_PahariEiJ_G0017866	Smg6	92	67.879	Mus_pahari
ENSDARG00000100481	smg6	90	56.035	MGP_SPRETEiJ_G0017572	Smg6	92	67.879	Mus_spretus
ENSDARG00000100481	smg6	91	56.557	ENSMPUG00000013046	SMG6	96	55.840	Mustela_putorius_furo
ENSDARG00000100481	smg6	92	56.151	ENSMLUG00000005739	SMG6	99	55.137	Myotis_lucifugus
ENSDARG00000100481	smg6	76	55.823	ENSNGAG00000007287	Smg6	89	59.009	Nannospalax_galili
ENSDARG00000100481	smg6	98	56.015	ENSNBRG00000009511	smg6	99	58.788	Neolamprologus_brichardi
ENSDARG00000100481	smg6	76	56.672	ENSNLEG00000017171	SMG6	100	61.654	Nomascus_leucogenys
ENSDARG00000100481	smg6	78	54.235	ENSMEUG00000015804	SMG6	88	53.266	Notamacropus_eugenii
ENSDARG00000100481	smg6	52	65.922	ENSOPRG00000000579	SMG6	81	61.836	Ochotona_princeps
ENSDARG00000100481	smg6	96	61.970	ENSODEG00000008038	SMG6	87	61.712	Octodon_degus
ENSDARG00000100481	smg6	94	64.791	ENSONIG00000005594	smg6	100	65.277	Oreochromis_niloticus
ENSDARG00000100481	smg6	88	55.974	ENSOCUG00000013018	SMG6	95	54.980	Oryctolagus_cuniculus
ENSDARG00000100481	smg6	100	53.357	ENSORLG00000003317	smg6	100	53.631	Oryzias_latipes
ENSDARG00000100481	smg6	100	53.448	ENSORLG00020015343	smg6	100	53.695	Oryzias_latipes_hni
ENSDARG00000100481	smg6	100	52.656	ENSORLG00015020454	smg6	100	52.986	Oryzias_latipes_hsok
ENSDARG00000100481	smg6	100	54.179	ENSOMEG00000010838	smg6	100	54.556	Oryzias_melastigma
ENSDARG00000100481	smg6	100	50.802	ENSOGAG00000004483	SMG6	100	50.500	Otolemur_garnettii
ENSDARG00000100481	smg6	91	51.423	ENSOARG00000015076	SMG6	99	50.775	Ovis_aries
ENSDARG00000100481	smg6	90	56.350	ENSPPAG00000043296	SMG6	96	55.831	Pan_paniscus
ENSDARG00000100481	smg6	95	56.230	ENSPPRG00000014581	SMG6	100	55.573	Panthera_pardus
ENSDARG00000100481	smg6	77	56.230	ENSPTIG00000008925	SMG6	100	61.654	Panthera_tigris_altaica
ENSDARG00000100481	smg6	90	56.431	ENSPTRG00000008544	SMG6	100	61.654	Pan_troglodytes
ENSDARG00000100481	smg6	90	56.490	ENSPANG00000024588	SMG6	96	55.946	Papio_anubis
ENSDARG00000100481	smg6	82	47.832	ENSPSIG00000006660	SMG6	96	47.279	Pelodiscus_sinensis
ENSDARG00000100481	smg6	95	72.642	ENSPMGG00000000844	smg6	100	72.678	Periophthalmus_magnuspinnatus
ENSDARG00000100481	smg6	100	50.983	ENSPEMG00000020707	Smg6	100	50.472	Peromyscus_maniculatus_bairdii
ENSDARG00000100481	smg6	100	60.228	ENSPFOG00000012035	smg6	100	64.453	Poecilia_formosa
ENSDARG00000100481	smg6	100	56.056	ENSPLAG00000017660	smg6	100	56.838	Poecilia_latipinna
ENSDARG00000100481	smg6	100	56.326	ENSPMEG00000000258	smg6	100	57.021	Poecilia_mexicana
ENSDARG00000100481	smg6	100	56.416	ENSPREG00000010066	smg6	100	57.065	Poecilia_reticulata
ENSDARG00000100481	smg6	88	53.228	ENSPCAG00000000552	SMG6	96	52.310	Procavia_capensis
ENSDARG00000100481	smg6	100	51.004	ENSPCOG00000020925	SMG6	100	50.167	Propithecus_coquereli
ENSDARG00000100481	smg6	76	53.269	ENSPVAG00000002159	SMG6	79	53.656	Pteropus_vampyrus
ENSDARG00000100481	smg6	90	57.380	ENSPNYG00000024151	smg6	99	58.976	Pundamilia_nyererei
ENSDARG00000100481	smg6	100	62.741	ENSPNAG00000015480	smg6	98	82.047	Pygocentrus_nattereri
ENSDARG00000100481	smg6	100	50.606	ENSRNOG00000003041	Smg6	92	68.182	Rattus_norvegicus
ENSDARG00000100481	smg6	91	56.511	ENSRBIG00000024746	SMG6	97	55.990	Rhinopithecus_bieti
ENSDARG00000100481	smg6	91	56.511	ENSRROG00000030423	SMG6	100	61.654	Rhinopithecus_roxellana
ENSDARG00000100481	smg6	100	50.404	ENSSBOG00000022518	SMG6	100	48.658	Saimiri_boliviensis_boliviensis
ENSDARG00000100481	smg6	91	50.167	ENSSHAG00000010045	SMG6	73	59.759	Sarcophilus_harrisii
ENSDARG00000100481	smg6	94	57.031	ENSSFOG00015005436	smg6	91	57.208	Scleropages_formosus
ENSDARG00000100481	smg6	100	54.647	ENSSMAG00000019777	smg6	100	55.608	Scophthalmus_maximus
ENSDARG00000100481	smg6	100	56.692	ENSSDUG00000016412	smg6	100	57.754	Seriola_dumerili
ENSDARG00000100481	smg6	88	57.549	ENSSLDG00000020747	smg6	95	59.079	Seriola_lalandi_dorsalis
ENSDARG00000100481	smg6	99	54.803	ENSSPUG00000007152	SMG6	99	54.259	Sphenodon_punctatus
ENSDARG00000100481	smg6	100	56.963	ENSSPAG00000015633	smg6	100	58.353	Stegastes_partitus
ENSDARG00000100481	smg6	100	51.484	ENSSSCG00000017826	SMG6	100	50.705	Sus_scrofa
ENSDARG00000100481	smg6	100	49.763	ENSTGUG00000005836	SMG6	100	49.831	Taeniopygia_guttata
ENSDARG00000100481	smg6	91	59.300	ENSTRUG00000000358	smg6	98	57.781	Takifugu_rubripes
ENSDARG00000100481	smg6	99	58.740	ENSTNIG00000016164	smg6	100	59.236	Tetraodon_nigroviridis
ENSDARG00000100481	smg6	90	53.554	ENSTBEG00000011424	SMG6	96	52.488	Tupaia_belangeri
ENSDARG00000100481	smg6	82	58.997	ENSTTRG00000001175	SMG6	89	58.772	Tursiops_truncatus
ENSDARG00000100481	smg6	100	51.008	ENSUAMG00000025152	SMG6	100	50.538	Ursus_americanus
ENSDARG00000100481	smg6	91	51.286	ENSUMAG00000009306	SMG6	99	50.741	Ursus_maritimus
ENSDARG00000100481	smg6	77	81.481	ENSVPAG00000000225	SMG6	87	81.481	Vicugna_pacos
ENSDARG00000100481	smg6	89	55.687	ENSVVUG00000021727	SMG6	100	50.034	Vulpes_vulpes
ENSDARG00000100481	smg6	78	52.437	ENSXETG00000023799	SMG6	77	56.000	Xenopus_tropicalis
ENSDARG00000100481	smg6	98	56.610	ENSXCOG00000009867	smg6	99	56.772	Xiphophorus_couchianus
ENSDARG00000100481	smg6	100	55.872	ENSXMAG00000010321	smg6	100	56.432	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	21873635.	IBA	Process
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	19414594.	IDA	Process
GO:0004521	endoribonuclease activity	21873635.	IBA	Function
GO:0005697	telomerase holoenzyme complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0007004	telomere maintenance via telomerase	21873635.	IBA	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0032210	regulation of telomere maintenance via telomerase	21873635.	IBA	Process
GO:0042162	telomeric DNA binding	21873635.	IBA	Function
GO:0043009	chordate embryonic development	19414594.	IMP	Process
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:0043487	regulation of RNA stability	21873635.	IBA	Process
GO:0070034	telomerase RNA binding	21873635.	IBA	Function