EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000100544 (Gene tree)
Gene ID: 100006445
Gene Symbol: zgc:173486
Alias: -
Full Name: zgc:173486
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9616 bases
Position: chr22:1501566-1511181
Accession: ZDB-GENE-080305-13
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	1	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	2	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	3	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	4	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	5	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	6	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	7	8
ENSDARP00000138269	zf-C2H2	PF00096.26	3.1e-47	8	8
ENSDARP00000131600	zf-C2H2	PF00096.26	4.3e-17	1	3
ENSDARP00000131600	zf-C2H2	PF00096.26	4.3e-17	2	3
ENSDARP00000131600	zf-C2H2	PF00096.26	4.3e-17	3	3
ENSDARP00000131600	zf-met	PF12874.7	6.6e-06	1	2
ENSDARP00000131600	zf-met	PF12874.7	6.6e-06	2	2
ENSDARP00000138269	zf-met	PF12874.7	5.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000167788	-	525	-	ENSDARP00000131600	129 (aa)	-	A0A0R4ICJ6
ENSDART00000159973	-	1521	XM_021469275	ENSDARP00000138269	506 (aa)	XP_021324950	A0A0R4IRE6

Gene Model

Click here to download ENSDARG00000100544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000100544's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000100544	zgc:173486	64	65.714	ENSDARG00000095397	znf1170	100	65.714
ENSDARG00000100544	zgc:173486	97	65.333	ENSDARG00000116814	CU570894.2	100	55.102
ENSDARG00000100544	zgc:173486	100	100.000	ENSDARG00000100361	znf1174	95	59.873
ENSDARG00000100544	zgc:173486	98	57.333	ENSDARG00000100882	znf1154	96	56.774
ENSDARG00000100544	zgc:173486	98	96.667	ENSDARG00000093875	zgc:174224	73	86.111
ENSDARG00000100544	zgc:173486	100	94.595	ENSDARG00000102053	znf1164	68	96.774
ENSDARG00000100544	zgc:173486	99	50.000	ENSDARG00000014775	zgc:113220	99	53.425
ENSDARG00000100544	zgc:173486	98	56.757	ENSDARG00000115326	znf1002	96	56.209
ENSDARG00000100544	zgc:173486	98	55.072	ENSDARG00000111899	zgc:171435	90	55.072
ENSDARG00000100544	zgc:173486	99	41.704	ENSDARG00000094736	znf1157	95	64.602
ENSDARG00000100544	zgc:173486	98	52.907	ENSDARG00000112141	znf1169	95	53.488
ENSDARG00000100544	zgc:173486	99	62.162	ENSDARG00000098613	si:dkey-15h8.16	97	61.039
ENSDARG00000100544	zgc:173486	98	41.725	ENSDARG00000071790	znf1153	95	61.783
ENSDARG00000100544	zgc:173486	99	100.000	ENSDARG00000101694	znf1184	99	57.143
ENSDARG00000100544	zgc:173486	88	80.000	ENSDARG00000098898	si:ch211-255f4.2	100	80.000
ENSDARG00000100544	zgc:173486	100	97.297	ENSDARG00000099618	si:dkey-1b17.6	96	62.195
ENSDARG00000100544	zgc:173486	100	57.534	ENSDARG00000078159	zgc:175284	100	57.534
ENSDARG00000100544	zgc:173486	99	58.904	ENSDARG00000071833	znf1162	100	58.904
ENSDARG00000100544	zgc:173486	99	45.217	ENSDARG00000095704	si:dkey-4c15.13	100	58.974
ENSDARG00000100544	zgc:173486	72	62.667	ENSDARG00000113666	znf1173	82	53.906
ENSDARG00000100544	zgc:173486	100	51.111	ENSDARG00000077085	zgc:110821	96	55.118
ENSDARG00000100544	zgc:173486	99	38.318	ENSDARG00000071714	znf983	98	59.420
ENSDARG00000100544	zgc:173486	100	86.486	ENSDARG00000093562	si:dkey-20i20.7	92	58.642
ENSDARG00000100544	zgc:173486	96	63.087	ENSDARG00000092246	si:dkey-20i20.3	89	61.688

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000100544	zgc:173486	99	41.202	ENSCSEG00000019047	-	65	50.617	Cynoglossus_semilaevis
ENSDARG00000100544	zgc:173486	91	44.944	ENSKMAG00000001084	-	88	36.364	Kryptolebias_marmoratus
ENSDARG00000100544	zgc:173486	100	50.000	ENSNBRG00000006411	-	100	37.354	Neolamprologus_brichardi
ENSDARG00000100544	zgc:173486	100	45.745	ENSSPAG00000020771	-	66	48.649	Stegastes_partitus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0046872	metal ion binding	-	IEA	Function