EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000100558 (Gene tree)
Gene ID: 407727
Gene Symbol: slbp
Alias: cb157|sb:cb157|si:dkey-102m7.2
Full Name: stem-loop binding protein
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4482 bases
Position: chr14:14841685-14846166
Accession: ZDB-GENE-030131-9686
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000141903	SLBP_RNA_bind	PF15247.6	1.9e-29	1	1
ENSDARP00000140437	SLBP_RNA_bind	PF15247.6	4.6e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162039	-	985	-	ENSDARP00000141903	254 (aa)	-	A0A0R4IZV7
ENSDART00000170831	-	645	-	-	- (aa)	-	-
ENSDART00000158291	-	1331	-	ENSDARP00000140437	302 (aa)	-	A0A0R4IVR7

Gene Model

Click here to download ENSDARG00000100558's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000100558's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000100558	slbp	64	63.580	ENSG00000163950	SLBP	73	64.368	Homo_sapiens
ENSDARG00000100558	slbp	88	55.357	ENSAPOG00000004953	slbp	97	54.643	Acanthochromis_polyacanthus
ENSDARG00000100558	slbp	56	65.734	ENSAMEG00000016915	SLBP	89	55.024	Ailuropoda_melanoleuca
ENSDARG00000100558	slbp	83	59.542	ENSACIG00000022308	slbp	96	59.160	Amphilophus_citrinellus
ENSDARG00000100558	slbp	88	55.357	ENSAOCG00000024545	slbp	97	54.643	Amphiprion_ocellaris
ENSDARG00000100558	slbp	88	55.357	ENSAPEG00000017629	slbp	97	54.643	Amphiprion_percula
ENSDARG00000100558	slbp	88	54.577	ENSATEG00000016358	slbp	97	53.873	Anabas_testudineus
ENSDARG00000100558	slbp	69	54.762	ENSAPLG00000015989	-	89	55.714	Anas_platyrhynchos
ENSDARG00000100558	slbp	64	62.805	ENSANAG00000034769	SLBP	68	67.284	Aotus_nancymaae
ENSDARG00000100558	slbp	90	53.497	ENSACLG00000007036	-	100	52.797	Astatotilapia_calliptera
ENSDARG00000100558	slbp	90	63.273	ENSAMXG00000014527	slbp	100	63.273	Astyanax_mexicanus
ENSDARG00000100558	slbp	71	60.000	ENSBTAG00000001328	SLBP	88	54.826	Bos_taurus
ENSDARG00000100558	slbp	64	62.963	ENSCJAG00000001790	SLBP	71	58.824	Callithrix_jacchus
ENSDARG00000100558	slbp	66	62.000	ENSCAFG00000015016	SLBP	83	53.909	Canis_familiaris
ENSDARG00000100558	slbp	66	62.000	ENSCAFG00020012334	SLBP	83	53.909	Canis_lupus_dingo
ENSDARG00000100558	slbp	66	62.000	ENSCHIG00000019364	SLBP	83	56.148	Capra_hircus
ENSDARG00000100558	slbp	75	54.867	ENSTSYG00000000376	SLBP	88	52.212	Carlito_syrichta
ENSDARG00000100558	slbp	51	66.667	ENSCAPG00000016340	SLBP	84	57.647	Cavia_aperea
ENSDARG00000100558	slbp	58	63.068	ENSCPOG00000000031	SLBP	83	54.217	Cavia_porcellus
ENSDARG00000100558	slbp	65	61.929	ENSCATG00000029173	SLBP	68	67.284	Cercocebus_atys
ENSDARG00000100558	slbp	55	67.470	ENSCLAG00000008157	SLBP	84	55.285	Chinchilla_lanigera
ENSDARG00000100558	slbp	59	48.603	ENSCSAG00000015628	SLBP	61	45.810	Chlorocebus_sabaeus
ENSDARG00000100558	slbp	80	55.242	ENSCPBG00000000746	SLBP	91	51.292	Chrysemys_picta_bellii
ENSDARG00000100558	slbp	56	65.734	ENSCANG00000041008	SLBP	74	63.354	Colobus_angolensis_palliatus
ENSDARG00000100558	slbp	67	62.069	ENSCGRG00001009760	-	84	56.098	Cricetulus_griseus_chok1gshd
ENSDARG00000100558	slbp	68	61.951	ENSCGRG00001012991	-	86	55.422	Cricetulus_griseus_chok1gshd
ENSDARG00000100558	slbp	67	62.069	ENSCGRG00000004506	Slbp	84	56.098	Cricetulus_griseus_crigri
ENSDARG00000100558	slbp	83	58.366	ENSCSEG00000020337	-	92	57.588	Cynoglossus_semilaevis
ENSDARG00000100558	slbp	84	57.088	ENSCVAG00000019592	-	94	57.088	Cyprinodon_variegatus
ENSDARG00000100558	slbp	67	59.242	ENSDNOG00000047539	SLBP	85	52.362	Dasypus_novemcinctus
ENSDARG00000100558	slbp	57	61.644	ENSDORG00000003028	Slbp	93	62.821	Dipodomys_ordii
ENSDARG00000100558	slbp	68	55.072	ENSETEG00000004641	SLBP	96	55.556	Echinops_telfairi
ENSDARG00000100558	slbp	54	68.613	ENSEASG00005022714	SLBP	88	54.645	Equus_asinus_asinus
ENSDARG00000100558	slbp	80	52.191	ENSECAG00000011689	SLBP	80	49.801	Equus_caballus
ENSDARG00000100558	slbp	89	56.989	ENSELUG00000012854	slbp	98	56.989	Esox_lucius
ENSDARG00000100558	slbp	56	66.071	ENSFCAG00000000169	SLBP	82	55.502	Felis_catus
ENSDARG00000100558	slbp	85	51.923	ENSFALG00000010003	-	89	50.769	Ficedula_albicollis
ENSDARG00000100558	slbp	58	63.793	ENSFDAG00000007592	SLBP	87	56.198	Fukomys_damarensis
ENSDARG00000100558	slbp	83	60.311	ENSFHEG00000007497	slbp	94	59.302	Fundulus_heteroclitus
ENSDARG00000100558	slbp	50	64.103	ENSGMOG00000015352	slbp	96	67.308	Gadus_morhua
ENSDARG00000100558	slbp	80	54.472	ENSGALG00000015712	SLBP	84	53.659	Gallus_gallus
ENSDARG00000100558	slbp	87	56.506	ENSGAFG00000019577	slbp	96	55.762	Gambusia_affinis
ENSDARG00000100558	slbp	72	57.333	ENSGACG00000019596	slbp	89	57.333	Gasterosteus_aculeatus
ENSDARG00000100558	slbp	78	55.833	ENSGAGG00000012096	SLBP	94	55.000	Gopherus_agassizii
ENSDARG00000100558	slbp	64	63.580	ENSGGOG00000003167	SLBP	73	64.368	Gorilla_gorilla
ENSDARG00000100558	slbp	90	53.497	ENSHBUG00000003338	-	100	52.797	Haplochromis_burtoni
ENSDARG00000100558	slbp	54	66.423	ENSHGLG00000005955	-	91	55.000	Heterocephalus_glaber_female
ENSDARG00000100558	slbp	64	52.604	ENSHGLG00000008313	-	84	49.590	Heterocephalus_glaber_female
ENSDARG00000100558	slbp	57	58.480	ENSHGLG00000010461	-	85	50.209	Heterocephalus_glaber_female
ENSDARG00000100558	slbp	57	58.480	ENSHGLG00100014906	-	85	50.209	Heterocephalus_glaber_male
ENSDARG00000100558	slbp	64	53.646	ENSHGLG00100010510	-	84	50.410	Heterocephalus_glaber_male
ENSDARG00000100558	slbp	57	63.953	ENSHGLG00100014018	-	92	61.340	Heterocephalus_glaber_male
ENSDARG00000100558	slbp	83	57.647	ENSHCOG00000013425	slbp	91	57.255	Hippocampus_comes
ENSDARG00000100558	slbp	81	64.372	ENSIPUG00000016780	slbp	92	64.372	Ictalurus_punctatus
ENSDARG00000100558	slbp	60	63.333	ENSSTOG00000003262	SLBP	86	53.937	Ictidomys_tridecemlineatus
ENSDARG00000100558	slbp	66	63.000	ENSJJAG00000002394	-	82	55.144	Jaculus_jaculus
ENSDARG00000100558	slbp	66	63.000	ENSJJAG00000020549	-	83	57.202	Jaculus_jaculus
ENSDARG00000100558	slbp	86	56.679	ENSKMAG00000008187	slbp	94	56.877	Kryptolebias_marmoratus
ENSDARG00000100558	slbp	83	56.371	ENSLBEG00000024709	slbp	91	55.039	Labrus_bergylta
ENSDARG00000100558	slbp	83	48.855	ENSLACG00000014623	SLBP	86	49.206	Latimeria_chalumnae
ENSDARG00000100558	slbp	88	57.447	ENSLOCG00000011027	slbp	92	57.447	Lepisosteus_oculatus
ENSDARG00000100558	slbp	66	62.814	ENSLAFG00000012933	SLBP	90	60.538	Loxodonta_africana
ENSDARG00000100558	slbp	64	63.580	ENSMFAG00000030130	SLBP	68	64.198	Macaca_fascicularis
ENSDARG00000100558	slbp	64	63.580	ENSMMUG00000032303	SLBP	71	63.580	Macaca_mulatta
ENSDARG00000100558	slbp	56	65.734	ENSMLEG00000024639	SLBP	63	67.284	Mandrillus_leucophaeus
ENSDARG00000100558	slbp	82	54.340	ENSMAMG00000001046	-	90	53.585	Mastacembelus_armatus
ENSDARG00000100558	slbp	90	53.497	ENSMZEG00005017261	-	100	52.797	Maylandia_zebra
ENSDARG00000100558	slbp	69	56.459	ENSMGAG00000013085	SLBP	89	55.502	Meleagris_gallopavo
ENSDARG00000100558	slbp	70	60.000	ENSMAUG00000009490	Slbp	84	54.618	Mesocricetus_auratus
ENSDARG00000100558	slbp	74	55.556	ENSMICG00000014244	SLBP	88	52.679	Microcebus_murinus
ENSDARG00000100558	slbp	68	62.381	ENSMOCG00000015826	Slbp	92	61.881	Microtus_ochrogaster
ENSDARG00000100558	slbp	82	56.126	ENSMMOG00000010181	slbp	92	55.336	Mola_mola
ENSDARG00000100558	slbp	66	59.314	ENSMODG00000004304	SLBP	89	51.210	Monodelphis_domestica
ENSDARG00000100558	slbp	90	52.941	ENSMALG00000013883	-	73	52.249	Monopterus_albus
ENSDARG00000100558	slbp	68	62.857	MGP_CAROLIEiJ_G0027117	Slbp	89	62.376	Mus_caroli
ENSDARG00000100558	slbp	68	62.857	ENSMUSG00000004642	Slbp	89	62.376	Mus_musculus
ENSDARG00000100558	slbp	68	62.857	MGP_PahariEiJ_G0016901	Slbp	89	62.376	Mus_pahari
ENSDARG00000100558	slbp	68	62.857	MGP_SPRETEiJ_G0028113	Slbp	89	62.376	Mus_spretus
ENSDARG00000100558	slbp	68	58.721	ENSMPUG00000011139	SLBP	81	55.814	Mustela_putorius_furo
ENSDARG00000100558	slbp	63	60.377	ENSMLUG00000004425	SLBP	84	54.762	Myotis_lucifugus
ENSDARG00000100558	slbp	80	55.144	ENSNGAG00000020799	Slbp	83	55.102	Nannospalax_galili
ENSDARG00000100558	slbp	76	57.613	ENSNBRG00000006044	-	89	57.202	Neolamprologus_brichardi
ENSDARG00000100558	slbp	64	63.580	ENSNLEG00000000048	SLBP	73	64.368	Nomascus_leucogenys
ENSDARG00000100558	slbp	53	64.596	ENSMEUG00000002501	SLBP	98	57.459	Notamacropus_eugenii
ENSDARG00000100558	slbp	57	66.279	ENSODEG00000012641	SLBP	83	56.198	Octodon_degus
ENSDARG00000100558	slbp	90	54.325	ENSONIG00000017469	-	100	53.633	Oreochromis_niloticus
ENSDARG00000100558	slbp	71	55.556	ENSOANG00000014243	SLBP	84	56.250	Ornithorhynchus_anatinus
ENSDARG00000100558	slbp	84	55.469	ENSORLG00000024887	-	90	55.777	Oryzias_latipes
ENSDARG00000100558	slbp	83	55.336	ENSORLG00020007798	slbp	90	54.941	Oryzias_latipes_hni
ENSDARG00000100558	slbp	84	55.859	ENSORLG00015016656	slbp	91	55.469	Oryzias_latipes_hsok
ENSDARG00000100558	slbp	85	48.780	ENSOMEG00000010818	slbp	78	61.751	Oryzias_melastigma
ENSDARG00000100558	slbp	55	65.663	ENSOGAG00000009750	SLBP	71	62.437	Otolemur_garnettii
ENSDARG00000100558	slbp	57	65.753	ENSOARG00000016090	SLBP	89	58.852	Ovis_aries
ENSDARG00000100558	slbp	64	63.580	ENSPPAG00000033300	SLBP	73	60.920	Pan_paniscus
ENSDARG00000100558	slbp	56	65.476	ENSPPRG00000016897	SLBP	90	53.689	Panthera_pardus
ENSDARG00000100558	slbp	54	67.883	ENSPTIG00000015057	SLBP	88	55.435	Panthera_tigris_altaica
ENSDARG00000100558	slbp	66	61.307	ENSPTRG00000015832	SLBP	73	60.920	Pan_troglodytes
ENSDARG00000100558	slbp	61	64.103	ENSPANG00000004932	SLBP	68	67.284	Papio_anubis
ENSDARG00000100558	slbp	82	60.000	ENSPKIG00000006183	slbp	93	57.299	Paramormyrops_kingsleyae
ENSDARG00000100558	slbp	60	64.324	ENSPMGG00000017684	-	88	61.413	Periophthalmus_magnuspinnatus
ENSDARG00000100558	slbp	67	62.069	ENSPEMG00000018369	Slbp	84	56.098	Peromyscus_maniculatus_bairdii
ENSDARG00000100558	slbp	66	55.093	ENSPCIG00000013575	SLBP	70	50.000	Phascolarctos_cinereus
ENSDARG00000100558	slbp	87	56.877	ENSPFOG00000000462	slbp	96	56.134	Poecilia_formosa
ENSDARG00000100558	slbp	87	56.877	ENSPLAG00000008300	slbp	96	56.134	Poecilia_latipinna
ENSDARG00000100558	slbp	87	56.877	ENSPMEG00000020807	slbp	96	56.134	Poecilia_mexicana
ENSDARG00000100558	slbp	87	56.877	ENSPREG00000004561	slbp	96	56.134	Poecilia_reticulata
ENSDARG00000100558	slbp	66	61.000	ENSPPYG00000014529	SLBP	72	61.500	Pongo_abelii
ENSDARG00000100558	slbp	74	55.556	ENSPCOG00000017399	SLBP	88	52.679	Propithecus_coquereli
ENSDARG00000100558	slbp	80	52.675	ENSPVAG00000002807	SLBP	82	50.617	Pteropus_vampyrus
ENSDARG00000100558	slbp	90	53.497	ENSPNYG00000005451	-	100	52.797	Pundamilia_nyererei
ENSDARG00000100558	slbp	90	62.909	ENSPNAG00000018503	slbp	100	62.909	Pygocentrus_nattereri
ENSDARG00000100558	slbp	68	62.857	ENSRNOG00000037162	Slbp	86	56.522	Rattus_norvegicus
ENSDARG00000100558	slbp	65	61.929	ENSRBIG00000039159	SLBP	68	67.284	Rhinopithecus_bieti
ENSDARG00000100558	slbp	67	60.591	ENSRROG00000030081	SLBP	73	64.198	Rhinopithecus_roxellana
ENSDARG00000100558	slbp	53	67.164	ENSSBOG00000033897	SLBP	71	64.234	Saimiri_boliviensis_boliviensis
ENSDARG00000100558	slbp	66	57.870	ENSSHAG00000013939	SLBP	81	50.385	Sarcophilus_harrisii
ENSDARG00000100558	slbp	82	60.870	ENSSFOG00015019429	slbp	89	60.079	Scleropages_formosus
ENSDARG00000100558	slbp	83	54.887	ENSSMAG00000016028	-	91	54.135	Scophthalmus_maximus
ENSDARG00000100558	slbp	83	57.308	ENSSDUG00000000855	-	92	56.538	Seriola_dumerili
ENSDARG00000100558	slbp	82	39.819	ENSSLDG00000007554	-	67	55.670	Seriola_lalandi_dorsalis
ENSDARG00000100558	slbp	77	53.846	ENSSPUG00000016007	SLBP	90	52.157	Sphenodon_punctatus
ENSDARG00000100558	slbp	85	56.827	ENSSPAG00000004021	slbp	96	57.692	Stegastes_partitus
ENSDARG00000100558	slbp	66	61.000	ENSSSCG00000008676	SLBP	83	55.144	Sus_scrofa
ENSDARG00000100558	slbp	80	51.429	ENSTGUG00000010626	-	88	51.429	Taeniopygia_guttata
ENSDARG00000100558	slbp	82	58.103	ENSTRUG00000000688	slbp	89	57.769	Takifugu_rubripes
ENSDARG00000100558	slbp	85	54.393	ENSTNIG00000000484	-	99	54.724	Tetraodon_nigroviridis
ENSDARG00000100558	slbp	57	65.972	ENSTTRG00000010901	-	89	54.589	Tursiops_truncatus
ENSDARG00000100558	slbp	57	61.111	ENSTTRG00000004010	-	99	55.080	Tursiops_truncatus
ENSDARG00000100558	slbp	64	64.198	ENSUAMG00000012990	SLBP	82	55.328	Ursus_americanus
ENSDARG00000100558	slbp	53	67.910	ENSUMAG00000006119	SLBP	93	51.872	Ursus_maritimus
ENSDARG00000100558	slbp	66	63.000	ENSVVUG00000015578	-	83	53.086	Vulpes_vulpes
ENSDARG00000100558	slbp	83	49.035	ENSXETG00000003876	slbp	90	49.807	Xenopus_tropicalis
ENSDARG00000100558	slbp	77	59.917	ENSXCOG00000008275	slbp	90	59.091	Xiphophorus_couchianus
ENSDARG00000100558	slbp	87	56.877	ENSXMAG00000001331	-	95	56.134	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003407	neural retina development	25106852.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006398	mRNA 3'-end processing by stem-loop binding and cleavage	21873635.	IBA	Process
GO:0031290	retinal ganglion cell axon guidance	25106852.	IMP	Process
GO:0046530	photoreceptor cell differentiation	25106852.	IMP	Process
GO:0051028	mRNA transport	21873635.	IBA	Process
GO:0071204	histone pre-mRNA 3'end processing complex	21873635.	IBA	Component
GO:0071207	histone pre-mRNA stem-loop binding	21873635.	IBA	Function