EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000100636 (Gene tree)
Gene ID: 445379
Gene Symbol: rbm12
Alias: zgc:193560|zgc:193570
Full Name: RNA binding motif protein 12
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7408 bases
Position: chr11:26376000-26383407
Accession: ZDB-GENE-081022-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000136782	RRM_1	PF00076.22	2.4e-35	1	4
ENSDARP00000136782	RRM_1	PF00076.22	2.4e-35	2	4
ENSDARP00000136782	RRM_1	PF00076.22	2.4e-35	3	4
ENSDARP00000136782	RRM_1	PF00076.22	2.4e-35	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165931	-	381	-	ENSDARP00000140887	85 (aa)	-	A0A0R4IVW2
ENSDART00000170043	-	3698	-	ENSDARP00000136782	876 (aa)	-	A0A0R4INU1

Gene Model

Click here to download ENSDARG00000100636's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000100636's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000100636	rbm12	79	57.500	ENSDARG00000079717	rbm12b	84	57.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000100636	rbm12	100	59.765	ENSACIG00000011053	rbm12	100	59.788	Amphilophus_citrinellus
ENSDARG00000100636	rbm12	100	59.445	ENSAOCG00000019579	rbm12	100	60.363	Amphiprion_ocellaris
ENSDARG00000100636	rbm12	50	72.414	ENSCCAG00000036056	-	98	50.447	Cebus_capucinus
ENSDARG00000100636	rbm12	58	76.106	ENSEBUG00000016806	rbm12	99	72.131	Eptatretus_burgeri
ENSDARG00000100636	rbm12	90	70.370	ENSECAG00000021997	RBM12	100	54.487	Equus_caballus
ENSDARG00000100636	rbm12	100	57.508	ENSGACG00000004202	rbm12	98	58.911	Gasterosteus_aculeatus
ENSDARG00000100636	rbm12	100	78.659	ENSIPUG00000014491	rbm12	100	79.888	Ictalurus_punctatus
ENSDARG00000100636	rbm12	100	45.514	ENSJJAG00000009879	-	100	46.937	Jaculus_jaculus
ENSDARG00000100636	rbm12	100	68.341	ENSLOCG00000018363	rbm12	100	69.432	Lepisosteus_oculatus
ENSDARG00000100636	rbm12	65	82.787	ENSMAMG00000001497	rbm12	95	82.787	Mastacembelus_armatus
ENSDARG00000100636	rbm12	69	44.548	ENSMICG00000029540	-	100	47.944	Microcebus_murinus
ENSDARG00000100636	rbm12	100	60.616	ENSMMOG00000013495	rbm12	100	61.160	Mola_mola
ENSDARG00000100636	rbm12	92	69.841	ENSMLUG00000011217	RBM12	98	54.216	Myotis_lucifugus
ENSDARG00000100636	rbm12	100	57.481	ENSOMEG00000008238	rbm12	100	58.360	Oryzias_melastigma
ENSDARG00000100636	rbm12	68	75.000	ENSPSIG00000007369	RBM12	89	75.000	Pelodiscus_sinensis
ENSDARG00000100636	rbm12	90	70.370	ENSSSCG00000036156	RBM12	100	53.805	Sus_scrofa
ENSDARG00000100636	rbm12	90	70.899	ENSTTRG00000017035	RBM12	100	54.304	Tursiops_truncatus
ENSDARG00000100636	rbm12	100	49.626	ENSXETG00000033541	RBM12	100	49.030	Xenopus_tropicalis
ENSDARG00000100636	rbm12	99	58.092	ENSXCOG00000014073	rbm12	99	58.414	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process