EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000100821 (Gene tree)
Gene ID: 564658
Gene Symbol: scrt1a
Alias: sb:eu669|zgc:172288
Full Name: scratch family zinc finger 1a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 2051 bases
Position: chr19:1184878-1186928
Accession: ZDB-GENE-080219-30
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000139403	zf-C2H2	PF00096.26	3.9e-26	1	4
ENSDARP00000139403	zf-C2H2	PF00096.26	3.9e-26	2	4
ENSDARP00000139403	zf-C2H2	PF00096.26	3.9e-26	3	4
ENSDARP00000139403	zf-C2H2	PF00096.26	3.9e-26	4	4
ENSDARP00000139403	zf-met	PF12874.7	5.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000163539	-	1562	-	ENSDARP00000139403	279 (aa)	-	A8WGA5

Gene Model

Click here to download ENSDARG00000100821's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000100821's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000100821	scrt1a	95	42.553	ENSDARG00000040046	snai2	98	42.553
ENSDARG00000100821	scrt1a	100	91.398	ENSDARG00000040214	scrt1b	100	91.398

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000100821	scrt1a	100	86.477	ENSAPOG00000009279	scrt1b	100	86.477	Acanthochromis_polyacanthus
ENSDARG00000100821	scrt1a	99	79.225	ENSAPOG00000015197	-	99	79.225	Acanthochromis_polyacanthus
ENSDARG00000100821	scrt1a	97	70.652	ENSAPOG00000003680	scrt2	96	70.652	Acanthochromis_polyacanthus
ENSDARG00000100821	scrt1a	100	84.397	ENSACIG00000013613	scrt1b	100	84.397	Amphilophus_citrinellus
ENSDARG00000100821	scrt1a	97	69.928	ENSACIG00000012604	scrt2	96	69.928	Amphilophus_citrinellus
ENSDARG00000100821	scrt1a	96	58.333	ENSACIG00000001296	-	96	58.333	Amphilophus_citrinellus
ENSDARG00000100821	scrt1a	99	78.451	ENSACIG00000006586	-	99	78.451	Amphilophus_citrinellus
ENSDARG00000100821	scrt1a	97	70.652	ENSAOCG00000021557	scrt2	96	70.652	Amphiprion_ocellaris
ENSDARG00000100821	scrt1a	99	78.451	ENSAOCG00000023304	-	99	78.451	Amphiprion_ocellaris
ENSDARG00000100821	scrt1a	100	86.833	ENSAOCG00000003910	scrt1b	100	86.833	Amphiprion_ocellaris
ENSDARG00000100821	scrt1a	100	86.477	ENSAPEG00000000869	scrt1b	100	86.477	Amphiprion_percula
ENSDARG00000100821	scrt1a	99	78.451	ENSAPEG00000005677	-	99	78.451	Amphiprion_percula
ENSDARG00000100821	scrt1a	97	70.652	ENSAPEG00000022558	scrt2	96	70.652	Amphiprion_percula
ENSDARG00000100821	scrt1a	100	87.189	ENSATEG00000002302	scrt1b	100	87.189	Anabas_testudineus
ENSDARG00000100821	scrt1a	99	80.282	ENSATEG00000011660	-	99	80.282	Anabas_testudineus
ENSDARG00000100821	scrt1a	96	54.313	ENSATEG00000003195	-	97	54.313	Anabas_testudineus
ENSDARG00000100821	scrt1a	97	65.696	ENSATEG00000023998	scrt2	97	65.696	Anabas_testudineus
ENSDARG00000100821	scrt1a	77	78.037	ENSACAG00000016109	SCRT2	95	78.037	Anolis_carolinensis
ENSDARG00000100821	scrt1a	99	76.744	ENSACLG00000012046	-	99	76.744	Astatotilapia_calliptera
ENSDARG00000100821	scrt1a	100	86.477	ENSACLG00000007162	scrt1b	100	86.477	Astatotilapia_calliptera
ENSDARG00000100821	scrt1a	88	69.960	ENSAMXG00000034158	scrt2	92	69.960	Astyanax_mexicanus
ENSDARG00000100821	scrt1a	100	88.889	ENSAMXG00000038085	scrt1a	100	88.889	Astyanax_mexicanus
ENSDARG00000100821	scrt1a	98	82.609	ENSAMXG00000042624	SCRT1	99	82.609	Astyanax_mexicanus
ENSDARG00000100821	scrt1a	58	61.111	WBGene00000468	ces-1	61	59.880	Caenorhabditis_elegans
ENSDARG00000100821	scrt1a	86	63.200	ENSCPBG00000027613	SCRT2	100	63.200	Chrysemys_picta_bellii
ENSDARG00000100821	scrt1a	100	86.380	ENSCPBG00000018899	SCRT1	100	86.380	Chrysemys_picta_bellii
ENSDARG00000100821	scrt1a	88	49.796	ENSCGRG00000001380	Scrt2	100	49.796	Cricetulus_griseus_crigri
ENSDARG00000100821	scrt1a	100	86.121	ENSCSEG00000008596	scrt1b	100	86.121	Cynoglossus_semilaevis
ENSDARG00000100821	scrt1a	99	78.041	ENSCSEG00000014892	-	99	78.041	Cynoglossus_semilaevis
ENSDARG00000100821	scrt1a	97	66.007	ENSCSEG00000021542	scrt2	97	66.007	Cynoglossus_semilaevis
ENSDARG00000100821	scrt1a	100	86.833	ENSCVAG00000009561	scrt1b	100	86.833	Cyprinodon_variegatus
ENSDARG00000100821	scrt1a	99	77.517	ENSCVAG00000003190	-	99	77.517	Cyprinodon_variegatus
ENSDARG00000100821	scrt1a	97	64.725	ENSCVAG00000021038	scrt2	97	64.725	Cyprinodon_variegatus
ENSDARG00000100821	scrt1a	96	64.548	ENSELUG00000023883	scrt2	95	66.216	Esox_lucius
ENSDARG00000100821	scrt1a	99	90.942	ENSELUG00000005435	scrt1b	99	90.942	Esox_lucius
ENSDARG00000100821	scrt1a	99	92.446	ENSELUG00000022228	scrt1a	99	92.446	Esox_lucius
ENSDARG00000100821	scrt1a	83	72.532	ENSFALG00000005718	SCRT2	97	72.532	Ficedula_albicollis
ENSDARG00000100821	scrt1a	97	61.852	ENSFDAG00000008733	SCRT1	97	61.852	Fukomys_damarensis
ENSDARG00000100821	scrt1a	99	77.852	ENSFHEG00000009794	-	99	77.852	Fundulus_heteroclitus
ENSDARG00000100821	scrt1a	100	86.477	ENSFHEG00000014820	scrt1b	100	86.477	Fundulus_heteroclitus
ENSDARG00000100821	scrt1a	97	71.739	ENSFHEG00000005732	scrt2	96	71.739	Fundulus_heteroclitus
ENSDARG00000100821	scrt1a	57	94.355	ENSGMOG00000013833	-	54	94.355	Gadus_morhua
ENSDARG00000100821	scrt1a	99	84.286	ENSGMOG00000000629	scrt1b	100	84.286	Gadus_morhua
ENSDARG00000100821	scrt1a	97	60.194	ENSGMOG00000019519	scrt2	96	60.194	Gadus_morhua
ENSDARG00000100821	scrt1a	97	65.201	ENSGALG00000028912	SCRT2	97	64.769	Gallus_gallus
ENSDARG00000100821	scrt1a	99	78.292	ENSGAFG00000009650	-	99	78.292	Gambusia_affinis
ENSDARG00000100821	scrt1a	100	85.765	ENSGAFG00000007636	scrt1b	100	85.765	Gambusia_affinis
ENSDARG00000100821	scrt1a	97	66.667	ENSGAFG00000003093	scrt2	97	66.667	Gambusia_affinis
ENSDARG00000100821	scrt1a	99	76.190	ENSGACG00000004072	-	99	76.190	Gasterosteus_aculeatus
ENSDARG00000100821	scrt1a	99	84.588	ENSGACG00000008982	scrt1b	99	84.588	Gasterosteus_aculeatus
ENSDARG00000100821	scrt1a	66	80.328	ENSGAGG00000020760	-	71	80.328	Gopherus_agassizii
ENSDARG00000100821	scrt1a	96	64.855	ENSGAGG00000020761	SCRT2	96	64.855	Gopherus_agassizii
ENSDARG00000100821	scrt1a	99	87.681	ENSGAGG00000011736	SCRT1	100	87.681	Gopherus_agassizii
ENSDARG00000100821	scrt1a	97	70.290	ENSHBUG00000012492	scrt2	96	70.290	Haplochromis_burtoni
ENSDARG00000100821	scrt1a	99	78.788	ENSHBUG00000019101	-	99	78.788	Haplochromis_burtoni
ENSDARG00000100821	scrt1a	100	86.477	ENSHBUG00000016621	scrt1b	100	86.477	Haplochromis_burtoni
ENSDARG00000100821	scrt1a	100	84.698	ENSHCOG00000016704	scrt1b	100	84.698	Hippocampus_comes
ENSDARG00000100821	scrt1a	97	67.577	ENSHCOG00000008116	scrt2	97	67.577	Hippocampus_comes
ENSDARG00000100821	scrt1a	99	72.069	ENSHCOG00000016179	-	99	72.069	Hippocampus_comes
ENSDARG00000100821	scrt1a	98	76.277	ENSIPUG00000005547	-	99	76.277	Ictalurus_punctatus
ENSDARG00000100821	scrt1a	99	90.647	ENSIPUG00000004551	scrt1a	99	90.647	Ictalurus_punctatus
ENSDARG00000100821	scrt1a	51	84.397	ENSSTOG00000032944	SCRT2	82	81.046	Ictidomys_tridecemlineatus
ENSDARG00000100821	scrt1a	99	77.258	ENSKMAG00000009489	-	99	78.523	Kryptolebias_marmoratus
ENSDARG00000100821	scrt1a	97	65.372	ENSKMAG00000018087	scrt2	97	65.372	Kryptolebias_marmoratus
ENSDARG00000100821	scrt1a	100	86.477	ENSKMAG00000005484	scrt1b	100	86.477	Kryptolebias_marmoratus
ENSDARG00000100821	scrt1a	97	65.161	ENSLBEG00000015419	scrt2	97	65.161	Labrus_bergylta
ENSDARG00000100821	scrt1a	99	76.431	ENSLBEG00000023388	-	99	77.104	Labrus_bergylta
ENSDARG00000100821	scrt1a	100	87.455	ENSLACG00000003588	SCRT1	99	87.455	Latimeria_chalumnae
ENSDARG00000100821	scrt1a	100	92.473	ENSLOCG00000007573	scrt1b	100	92.473	Lepisosteus_oculatus
ENSDARG00000100821	scrt1a	97	54.369	ENSLOCG00000002246	scrt2	97	54.369	Lepisosteus_oculatus
ENSDARG00000100821	scrt1a	96	91.852	ENSMFAG00000035496	SCRT1	95	57.401	Macaca_fascicularis
ENSDARG00000100821	scrt1a	100	86.121	ENSMAMG00000011698	scrt1b	100	86.121	Mastacembelus_armatus
ENSDARG00000100821	scrt1a	97	65.049	ENSMAMG00000001291	scrt2	97	65.049	Mastacembelus_armatus
ENSDARG00000100821	scrt1a	99	78.788	ENSMZEG00005026702	-	99	78.788	Maylandia_zebra
ENSDARG00000100821	scrt1a	97	70.290	ENSMZEG00005026445	scrt2	96	70.290	Maylandia_zebra
ENSDARG00000100821	scrt1a	100	86.477	ENSMZEG00005005627	scrt1b	100	86.477	Maylandia_zebra
ENSDARG00000100821	scrt1a	83	71.121	ENSMGAG00000016579	SCRT2	97	71.121	Meleagris_gallopavo
ENSDARG00000100821	scrt1a	99	77.852	ENSMMOG00000018345	-	99	77.852	Mola_mola
ENSDARG00000100821	scrt1a	97	65.033	ENSMMOG00000009272	scrt2	97	65.033	Mola_mola
ENSDARG00000100821	scrt1a	100	85.765	ENSMMOG00000003327	scrt1b	100	85.765	Mola_mola
ENSDARG00000100821	scrt1a	97	68.705	ENSMALG00000013656	scrt2	96	68.705	Monopterus_albus
ENSDARG00000100821	scrt1a	100	86.477	ENSMALG00000012704	scrt1b	100	86.477	Monopterus_albus
ENSDARG00000100821	scrt1a	51	84.397	ENSNGAG00000020815	Scrt2	71	82.877	Nannospalax_galili
ENSDARG00000100821	scrt1a	99	78.451	ENSNBRG00000014882	-	99	78.451	Neolamprologus_brichardi
ENSDARG00000100821	scrt1a	97	69.928	ENSNBRG00000007221	scrt2	96	69.928	Neolamprologus_brichardi
ENSDARG00000100821	scrt1a	100	83.214	ENSNBRG00000013983	scrt1b	100	83.214	Neolamprologus_brichardi
ENSDARG00000100821	scrt1a	97	65.049	ENSONIG00000016758	scrt2	97	65.049	Oreochromis_niloticus
ENSDARG00000100821	scrt1a	97	74.426	ENSONIG00000019809	-	100	74.426	Oreochromis_niloticus
ENSDARG00000100821	scrt1a	100	85.765	ENSONIG00000006007	scrt1b	100	85.765	Oreochromis_niloticus
ENSDARG00000100821	scrt1a	96	60.870	ENSONIG00000003152	-	96	60.870	Oreochromis_niloticus
ENSDARG00000100821	scrt1a	97	65.049	ENSORLG00000024051	scrt2	97	65.049	Oryzias_latipes
ENSDARG00000100821	scrt1a	100	86.121	ENSORLG00000025651	scrt1b	100	86.121	Oryzias_latipes
ENSDARG00000100821	scrt1a	99	76.412	ENSORLG00000022825	-	99	76.412	Oryzias_latipes
ENSDARG00000100821	scrt1a	100	86.121	ENSORLG00020012967	scrt1b	100	86.121	Oryzias_latipes_hni
ENSDARG00000100821	scrt1a	97	65.049	ENSORLG00020011478	scrt2	97	65.049	Oryzias_latipes_hni
ENSDARG00000100821	scrt1a	99	76.744	ENSORLG00015010104	-	99	76.744	Oryzias_latipes_hsok
ENSDARG00000100821	scrt1a	97	65.049	ENSORLG00015005524	scrt2	97	65.049	Oryzias_latipes_hsok
ENSDARG00000100821	scrt1a	100	86.121	ENSORLG00015019165	scrt1b	100	86.121	Oryzias_latipes_hsok
ENSDARG00000100821	scrt1a	97	65.372	ENSOMEG00000002661	scrt2	97	65.372	Oryzias_melastigma
ENSDARG00000100821	scrt1a	99	79.461	ENSOMEG00000000286	-	99	79.461	Oryzias_melastigma
ENSDARG00000100821	scrt1a	100	86.121	ENSOMEG00000003925	scrt1b	100	86.121	Oryzias_melastigma
ENSDARG00000100821	scrt1a	100	91.398	ENSPKIG00000020085	scrt1a	100	91.398	Paramormyrops_kingsleyae
ENSDARG00000100821	scrt1a	100	89.247	ENSPKIG00000022303	SCRT1	100	89.247	Paramormyrops_kingsleyae
ENSDARG00000100821	scrt1a	100	82.857	ENSPMGG00000002260	scrt1b	100	82.857	Periophthalmus_magnuspinnatus
ENSDARG00000100821	scrt1a	99	76.976	ENSPMGG00000021402	-	99	76.976	Periophthalmus_magnuspinnatus
ENSDARG00000100821	scrt1a	97	72.101	ENSPMGG00000016561	scrt2	96	72.101	Periophthalmus_magnuspinnatus
ENSDARG00000100821	scrt1a	100	85.765	ENSPFOG00000017719	scrt1b	100	85.765	Poecilia_formosa
ENSDARG00000100821	scrt1a	97	65.049	ENSPFOG00000007738	scrt2	97	65.049	Poecilia_formosa
ENSDARG00000100821	scrt1a	99	78.114	ENSPFOG00000005616	-	99	78.114	Poecilia_formosa
ENSDARG00000100821	scrt1a	100	85.765	ENSPLAG00000009876	scrt1b	100	85.765	Poecilia_latipinna
ENSDARG00000100821	scrt1a	97	71.480	ENSPLAG00000005765	scrt2	96	71.480	Poecilia_latipinna
ENSDARG00000100821	scrt1a	99	78.114	ENSPLAG00000011718	-	99	78.114	Poecilia_latipinna
ENSDARG00000100821	scrt1a	97	71.480	ENSPMEG00000001538	scrt2	96	71.480	Poecilia_mexicana
ENSDARG00000100821	scrt1a	100	85.765	ENSPMEG00000013274	scrt1b	100	85.765	Poecilia_mexicana
ENSDARG00000100821	scrt1a	99	78.114	ENSPMEG00000011706	-	99	78.114	Poecilia_mexicana
ENSDARG00000100821	scrt1a	100	85.765	ENSPREG00000018985	scrt1b	100	85.765	Poecilia_reticulata
ENSDARG00000100821	scrt1a	97	65.049	ENSPREG00000001147	scrt2	97	65.049	Poecilia_reticulata
ENSDARG00000100821	scrt1a	99	77.441	ENSPREG00000012166	-	99	77.441	Poecilia_reticulata
ENSDARG00000100821	scrt1a	100	86.477	ENSPNYG00000017733	scrt1b	100	86.477	Pundamilia_nyererei
ENSDARG00000100821	scrt1a	97	70.290	ENSPNYG00000013109	scrt2	96	70.290	Pundamilia_nyererei
ENSDARG00000100821	scrt1a	99	78.788	ENSPNYG00000008865	-	99	78.788	Pundamilia_nyererei
ENSDARG00000100821	scrt1a	98	83.273	ENSPNAG00000027880	-	99	83.273	Pygocentrus_nattereri
ENSDARG00000100821	scrt1a	100	90.323	ENSPNAG00000017415	scrt1a	100	90.323	Pygocentrus_nattereri
ENSDARG00000100821	scrt1a	100	87.455	ENSSFOG00015001195	SCRT1	100	87.455	Scleropages_formosus
ENSDARG00000100821	scrt1a	99	76.667	ENSSMAG00000005122	-	99	76.667	Scophthalmus_maximus
ENSDARG00000100821	scrt1a	99	86.071	ENSSMAG00000019207	scrt1b	99	86.071	Scophthalmus_maximus
ENSDARG00000100821	scrt1a	99	78.859	ENSSDUG00000013215	-	99	78.859	Seriola_dumerili
ENSDARG00000100821	scrt1a	98	66.667	ENSSDUG00000001637	scrt2	96	66.667	Seriola_dumerili
ENSDARG00000100821	scrt1a	100	86.833	ENSSDUG00000007752	scrt1b	100	86.833	Seriola_dumerili
ENSDARG00000100821	scrt1a	99	78.859	ENSSLDG00000016454	-	99	78.859	Seriola_lalandi_dorsalis
ENSDARG00000100821	scrt1a	97	65.049	ENSSLDG00000013565	scrt2	97	65.049	Seriola_lalandi_dorsalis
ENSDARG00000100821	scrt1a	100	86.833	ENSSLDG00000017166	scrt1b	100	86.833	Seriola_lalandi_dorsalis
ENSDARG00000100821	scrt1a	97	67.159	ENSSPUG00000018637	SCRT2	97	67.159	Sphenodon_punctatus
ENSDARG00000100821	scrt1a	99	77.517	ENSSPAG00000006788	-	99	78.523	Stegastes_partitus
ENSDARG00000100821	scrt1a	100	86.833	ENSSPAG00000002200	scrt1b	100	86.833	Stegastes_partitus
ENSDARG00000100821	scrt1a	97	70.652	ENSSPAG00000014018	scrt2	96	70.652	Stegastes_partitus
ENSDARG00000100821	scrt1a	83	72.414	ENSTGUG00000006801	SCRT2	99	72.414	Taeniopygia_guttata
ENSDARG00000100821	scrt1a	98	86.957	ENSTRUG00000011637	scrt1b	99	86.957	Takifugu_rubripes
ENSDARG00000100821	scrt1a	99	78.378	ENSTRUG00000012719	-	99	78.378	Takifugu_rubripes
ENSDARG00000100821	scrt1a	97	68.729	ENSTRUG00000007620	scrt2	97	68.729	Takifugu_rubripes
ENSDARG00000100821	scrt1a	86	77.778	ENSTRUG00000019558	-	81	77.778	Takifugu_rubripes
ENSDARG00000100821	scrt1a	97	70.968	ENSTNIG00000012473	scrt2	97	70.968	Tetraodon_nigroviridis
ENSDARG00000100821	scrt1a	100	85.765	ENSTNIG00000018384	scrt1b	100	85.765	Tetraodon_nigroviridis
ENSDARG00000100821	scrt1a	100	85.409	ENSXCOG00000019675	scrt1b	100	85.409	Xiphophorus_couchianus
ENSDARG00000100821	scrt1a	97	67.003	ENSXCOG00000014367	scrt2	97	67.003	Xiphophorus_couchianus
ENSDARG00000100821	scrt1a	99	77.224	ENSXCOG00000019861	-	99	77.224	Xiphophorus_couchianus
ENSDARG00000100821	scrt1a	99	77.778	ENSXMAG00000015353	-	99	77.778	Xiphophorus_maculatus
ENSDARG00000100821	scrt1a	97	65.372	ENSXMAG00000028567	scrt2	97	65.372	Xiphophorus_maculatus
ENSDARG00000100821	scrt1a	100	85.409	ENSXMAG00000027885	scrt1b	100	85.409	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function