EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000101047 (Gene tree)
Gene ID: 406376
Gene Symbol: rtcb
Alias: zgc:76871
Full Name: RNA 2'%2C3'-cyclic phosphate and 5'-OH ligase
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 8724 bases
Position: chr4:676710-685433
Accession: ZDB-GENE-040426-2096
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000140069	RtcB	PF01139.17	3.8e-146	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000164735	-	541	-	ENSDARP00000132958	39 (aa)	-	A0A0R4II58
ENSDART00000168167	-	1693	-	ENSDARP00000140069	505 (aa)	-	Q6NZS4
ENSDART00000169470	-	657	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000101047's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000101047's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000101047	rtcb	100	94.059	ENSG00000100220	RTCB	100	94.059	Homo_sapiens
ENSDARG00000101047	rtcb	100	96.436	ENSAPOG00000006040	rtcb	100	96.436	Acanthochromis_polyacanthus
ENSDARG00000101047	rtcb	100	94.059	ENSAMEG00000016152	RTCB	100	94.059	Ailuropoda_melanoleuca
ENSDARG00000101047	rtcb	100	91.683	ENSACIG00000009083	rtcb	100	91.683	Amphilophus_citrinellus
ENSDARG00000101047	rtcb	100	96.832	ENSAOCG00000005662	rtcb	100	97.826	Amphiprion_ocellaris
ENSDARG00000101047	rtcb	96	91.992	ENSAPEG00000024653	rtcb	100	91.992	Amphiprion_percula
ENSDARG00000101047	rtcb	100	96.832	ENSAPEG00000024701	rtcb	100	96.832	Amphiprion_percula
ENSDARG00000101047	rtcb	100	96.832	ENSATEG00000000618	rtcb	100	96.832	Anabas_testudineus
ENSDARG00000101047	rtcb	100	91.329	ENSACAG00000014817	RTCB	100	91.329	Anolis_carolinensis
ENSDARG00000101047	rtcb	72	97.222	ENSANAG00000023724	-	84	97.222	Aotus_nancymaae
ENSDARG00000101047	rtcb	100	79.010	ENSANAG00000018191	-	91	79.010	Aotus_nancymaae
ENSDARG00000101047	rtcb	100	95.050	ENSACLG00000008367	rtcb	100	96.304	Astatotilapia_calliptera
ENSDARG00000101047	rtcb	100	96.832	ENSAMXG00000042320	rtcb	100	96.832	Astyanax_mexicanus
ENSDARG00000101047	rtcb	100	94.059	ENSBTAG00000011070	RTCB	100	94.059	Bos_taurus
ENSDARG00000101047	rtcb	100	74.257	WBGene00008877	rtcb-1	100	74.257	Caenorhabditis_elegans
ENSDARG00000101047	rtcb	100	93.861	ENSCJAG00000006128	RTCB	100	93.861	Callithrix_jacchus
ENSDARG00000101047	rtcb	100	94.059	ENSCAFG00000001785	RTCB	100	94.059	Canis_familiaris
ENSDARG00000101047	rtcb	100	89.901	ENSCAFG00000010789	-	100	89.901	Canis_familiaris
ENSDARG00000101047	rtcb	87	89.773	ENSCAFG00020018953	-	99	89.773	Canis_lupus_dingo
ENSDARG00000101047	rtcb	100	94.059	ENSCAFG00020004890	-	100	94.059	Canis_lupus_dingo
ENSDARG00000101047	rtcb	100	94.059	ENSCHIG00000027009	-	100	94.059	Capra_hircus
ENSDARG00000101047	rtcb	100	94.257	ENSTSYG00000012320	RTCB	100	94.257	Carlito_syrichta
ENSDARG00000101047	rtcb	94	94.130	ENSCAPG00000011647	RTCB	96	94.130	Cavia_aperea
ENSDARG00000101047	rtcb	100	93.861	ENSCCAG00000000618	RTCB	100	93.861	Cebus_capucinus
ENSDARG00000101047	rtcb	100	93.861	ENSCATG00000033424	RTCB	100	93.861	Cercocebus_atys
ENSDARG00000101047	rtcb	100	93.861	ENSCLAG00000007997	RTCB	100	93.861	Chinchilla_lanigera
ENSDARG00000101047	rtcb	100	93.663	ENSCSAG00000008351	RTCB	100	93.663	Chlorocebus_sabaeus
ENSDARG00000101047	rtcb	100	80.198	ENSCHOG00000009123	RTCB	100	80.198	Choloepus_hoffmanni
ENSDARG00000101047	rtcb	100	93.861	ENSCPBG00000023184	RTCB	100	93.861	Chrysemys_picta_bellii
ENSDARG00000101047	rtcb	100	82.178	ENSCING00000003830	-	100	82.178	Ciona_intestinalis
ENSDARG00000101047	rtcb	100	82.376	ENSCSAVG00000008124	-	100	81.549	Ciona_savignyi
ENSDARG00000101047	rtcb	100	90.099	ENSCANG00000001891	RTCB	100	90.099	Colobus_angolensis_palliatus
ENSDARG00000101047	rtcb	100	94.059	ENSCGRG00001011173	Rtcb	100	94.059	Cricetulus_griseus_chok1gshd
ENSDARG00000101047	rtcb	93	94.268	ENSCGRG00000009587	-	96	94.268	Cricetulus_griseus_crigri
ENSDARG00000101047	rtcb	100	95.644	ENSCSEG00000003986	rtcb	100	95.644	Cynoglossus_semilaevis
ENSDARG00000101047	rtcb	82	95.192	ENSCVAG00000000569	rtcb	95	95.192	Cyprinodon_variegatus
ENSDARG00000101047	rtcb	80	89.926	ENSDNOG00000012425	RTCB	99	89.926	Dasypus_novemcinctus
ENSDARG00000101047	rtcb	100	94.059	ENSDORG00000010855	Rtcb	100	94.059	Dipodomys_ordii
ENSDARG00000101047	rtcb	99	84.493	FBgn0032781	RtcB	99	84.493	Drosophila_melanogaster
ENSDARG00000101047	rtcb	100	88.515	ENSETEG00000001988	RTCB	100	88.515	Echinops_telfairi
ENSDARG00000101047	rtcb	100	85.941	ENSEBUG00000014235	rtcb	100	85.941	Eptatretus_burgeri
ENSDARG00000101047	rtcb	100	94.257	ENSEASG00005019059	RTCB	100	94.257	Equus_asinus_asinus
ENSDARG00000101047	rtcb	100	94.257	ENSECAG00000023998	RTCB	100	94.257	Equus_caballus
ENSDARG00000101047	rtcb	88	84.978	ENSEEUG00000006251	RTCB	99	84.978	Erinaceus_europaeus
ENSDARG00000101047	rtcb	100	84.121	ENSELUG00000009275	rtcb	100	84.121	Esox_lucius
ENSDARG00000101047	rtcb	100	94.059	ENSFCAG00000026480	RTCB	100	94.059	Felis_catus
ENSDARG00000101047	rtcb	100	95.050	ENSFALG00000013334	RTCB	100	95.050	Ficedula_albicollis
ENSDARG00000101047	rtcb	100	93.861	ENSFDAG00000018150	RTCB	100	93.861	Fukomys_damarensis
ENSDARG00000101047	rtcb	100	96.634	ENSFHEG00000009595	rtcb	100	96.634	Fundulus_heteroclitus
ENSDARG00000101047	rtcb	100	94.059	ENSGMOG00000018882	rtcb	100	94.059	Gadus_morhua
ENSDARG00000101047	rtcb	100	94.653	ENSGALG00000012611	RTCB	100	94.653	Gallus_gallus
ENSDARG00000101047	rtcb	100	95.644	ENSGAFG00000004198	rtcb	100	95.644	Gambusia_affinis
ENSDARG00000101047	rtcb	100	96.832	ENSGACG00000000586	rtcb	100	96.832	Gasterosteus_aculeatus
ENSDARG00000101047	rtcb	93	92.766	ENSGAGG00000019133	RTCB	98	92.766	Gopherus_agassizii
ENSDARG00000101047	rtcb	100	94.059	ENSGGOG00000011402	RTCB	100	94.059	Gorilla_gorilla
ENSDARG00000101047	rtcb	100	95.050	ENSHBUG00000020571	rtcb	100	95.050	Haplochromis_burtoni
ENSDARG00000101047	rtcb	100	93.861	ENSHGLG00000004492	RTCB	100	93.861	Heterocephalus_glaber_female
ENSDARG00000101047	rtcb	93	67.161	ENSHGLG00000001066	-	99	67.161	Heterocephalus_glaber_female
ENSDARG00000101047	rtcb	100	93.861	ENSHGLG00100008965	RTCB	100	93.861	Heterocephalus_glaber_male
ENSDARG00000101047	rtcb	100	94.280	ENSHCOG00000006450	rtcb	100	94.280	Hippocampus_comes
ENSDARG00000101047	rtcb	100	95.644	ENSIPUG00000015443	rtcb	100	95.644	Ictalurus_punctatus
ENSDARG00000101047	rtcb	100	93.861	ENSSTOG00000003878	RTCB	100	93.861	Ictidomys_tridecemlineatus
ENSDARG00000101047	rtcb	100	94.257	ENSJJAG00000010667	Rtcb	100	94.257	Jaculus_jaculus
ENSDARG00000101047	rtcb	100	96.238	ENSKMAG00000013178	rtcb	100	96.238	Kryptolebias_marmoratus
ENSDARG00000101047	rtcb	100	96.832	ENSLBEG00000010566	RTCB	100	96.832	Labrus_bergylta
ENSDARG00000101047	rtcb	100	95.644	ENSLBEG00000000214	rtcb	100	95.644	Labrus_bergylta
ENSDARG00000101047	rtcb	100	94.653	ENSLACG00000013033	RTCB	100	94.653	Latimeria_chalumnae
ENSDARG00000101047	rtcb	100	97.030	ENSLOCG00000016515	rtcb	99	97.030	Lepisosteus_oculatus
ENSDARG00000101047	rtcb	100	93.861	ENSLAFG00000002082	RTCB	100	93.861	Loxodonta_africana
ENSDARG00000101047	rtcb	100	93.663	ENSMFAG00000034419	RTCB	100	93.663	Macaca_fascicularis
ENSDARG00000101047	rtcb	100	93.663	ENSMMUG00000006720	RTCB	100	93.663	Macaca_mulatta
ENSDARG00000101047	rtcb	100	93.663	ENSMNEG00000040669	RTCB	100	93.663	Macaca_nemestrina
ENSDARG00000101047	rtcb	100	93.861	ENSMLEG00000040505	RTCB	100	93.861	Mandrillus_leucophaeus
ENSDARG00000101047	rtcb	100	96.634	ENSMAMG00000020676	rtcb	100	96.634	Mastacembelus_armatus
ENSDARG00000101047	rtcb	100	95.050	ENSMZEG00005018942	rtcb	100	95.050	Maylandia_zebra
ENSDARG00000101047	rtcb	100	94.280	ENSMGAG00000012805	RTCB	100	94.280	Meleagris_gallopavo
ENSDARG00000101047	rtcb	60	100.000	ENSMAUG00000008301	Rtcb	100	100.000	Mesocricetus_auratus
ENSDARG00000101047	rtcb	100	93.861	ENSMICG00000013303	-	100	93.861	Microcebus_murinus
ENSDARG00000101047	rtcb	100	74.851	ENSMICG00000036677	-	100	74.851	Microcebus_murinus
ENSDARG00000101047	rtcb	100	94.455	ENSMOCG00000002440	Rtcb	100	94.455	Microtus_ochrogaster
ENSDARG00000101047	rtcb	100	96.832	ENSMMOG00000005987	rtcb	100	96.832	Mola_mola
ENSDARG00000101047	rtcb	100	94.851	ENSMODG00000001414	RTCB	100	94.851	Monodelphis_domestica
ENSDARG00000101047	rtcb	100	96.634	ENSMALG00000007603	rtcb	100	96.634	Monopterus_albus
ENSDARG00000101047	rtcb	100	94.059	MGP_CAROLIEiJ_G0015689	Rtcb	100	94.059	Mus_caroli
ENSDARG00000101047	rtcb	100	94.059	ENSMUSG00000001783	Rtcb	100	94.059	Mus_musculus
ENSDARG00000101047	rtcb	100	94.059	MGP_PahariEiJ_G0031396	Rtcb	100	94.059	Mus_pahari
ENSDARG00000101047	rtcb	100	94.059	MGP_SPRETEiJ_G0016507	Rtcb	100	94.059	Mus_spretus
ENSDARG00000101047	rtcb	100	94.059	ENSMPUG00000012285	RTCB	100	94.059	Mustela_putorius_furo
ENSDARG00000101047	rtcb	100	91.124	ENSMLUG00000007803	RTCB	100	91.124	Myotis_lucifugus
ENSDARG00000101047	rtcb	72	100.000	ENSNGAG00000005093	Rtcb	100	100.000	Nannospalax_galili
ENSDARG00000101047	rtcb	100	95.248	ENSNBRG00000017202	rtcb	100	95.248	Neolamprologus_brichardi
ENSDARG00000101047	rtcb	100	94.059	ENSNLEG00000004960	RTCB	100	94.059	Nomascus_leucogenys
ENSDARG00000101047	rtcb	100	71.683	ENSMEUG00000007809	-	100	71.683	Notamacropus_eugenii
ENSDARG00000101047	rtcb	73	100.000	ENSOPRG00000003488	RTCB	79	100.000	Ochotona_princeps
ENSDARG00000101047	rtcb	82	100.000	ENSODEG00000013033	-	100	100.000	Octodon_degus
ENSDARG00000101047	rtcb	100	62.376	ENSODEG00000005042	-	100	62.376	Octodon_degus
ENSDARG00000101047	rtcb	100	96.040	ENSONIG00000007474	rtcb	100	96.040	Oreochromis_niloticus
ENSDARG00000101047	rtcb	100	94.653	ENSOANG00000005524	RTCB	100	94.653	Ornithorhynchus_anatinus
ENSDARG00000101047	rtcb	93	93.617	ENSOCUG00000008270	RTCB	96	93.617	Oryctolagus_cuniculus
ENSDARG00000101047	rtcb	100	95.842	ENSORLG00000020093	rtcb	100	95.842	Oryzias_latipes
ENSDARG00000101047	rtcb	100	95.842	ENSORLG00020003706	rtcb	100	95.842	Oryzias_latipes_hni
ENSDARG00000101047	rtcb	100	96.040	ENSORLG00015002968	rtcb	100	96.040	Oryzias_latipes_hsok
ENSDARG00000101047	rtcb	100	95.644	ENSOMEG00000021278	rtcb	100	95.644	Oryzias_melastigma
ENSDARG00000101047	rtcb	100	93.267	ENSOGAG00000001425	RTCB	100	93.267	Otolemur_garnettii
ENSDARG00000101047	rtcb	100	94.059	ENSOARG00000018008	RTCB	100	94.059	Ovis_aries
ENSDARG00000101047	rtcb	100	94.059	ENSPPAG00000028667	RTCB	100	94.059	Pan_paniscus
ENSDARG00000101047	rtcb	100	94.059	ENSPPRG00000004038	RTCB	100	94.059	Panthera_pardus
ENSDARG00000101047	rtcb	94	89.873	ENSPTIG00000020499	RTCB	97	90.928	Panthera_tigris_altaica
ENSDARG00000101047	rtcb	100	94.059	ENSPTRG00000014287	RTCB	100	94.059	Pan_troglodytes
ENSDARG00000101047	rtcb	100	93.663	ENSPANG00000016035	RTCB	100	93.663	Papio_anubis
ENSDARG00000101047	rtcb	100	95.644	ENSPKIG00000001881	rtcb	100	95.644	Paramormyrops_kingsleyae
ENSDARG00000101047	rtcb	91	93.913	ENSPSIG00000011690	RTCB	100	93.913	Pelodiscus_sinensis
ENSDARG00000101047	rtcb	100	95.842	ENSPMGG00000016672	rtcb	100	95.842	Periophthalmus_magnuspinnatus
ENSDARG00000101047	rtcb	100	94.059	ENSPEMG00000019548	Rtcb	100	94.059	Peromyscus_maniculatus_bairdii
ENSDARG00000101047	rtcb	100	90.693	ENSPMAG00000005657	rtcb	100	90.693	Petromyzon_marinus
ENSDARG00000101047	rtcb	100	94.851	ENSPCIG00000009467	RTCB	100	94.851	Phascolarctos_cinereus
ENSDARG00000101047	rtcb	100	96.040	ENSPFOG00000003058	rtcb	100	96.040	Poecilia_formosa
ENSDARG00000101047	rtcb	100	96.238	ENSPLAG00000017663	rtcb	100	96.238	Poecilia_latipinna
ENSDARG00000101047	rtcb	100	96.040	ENSPMEG00000006227	rtcb	100	96.040	Poecilia_mexicana
ENSDARG00000101047	rtcb	100	95.842	ENSPREG00000018467	rtcb	100	95.842	Poecilia_reticulata
ENSDARG00000101047	rtcb	100	94.059	ENSPPYG00000011752	RTCB	100	94.059	Pongo_abelii
ENSDARG00000101047	rtcb	93	77.754	ENSPCAG00000013641	RTCB	100	77.754	Procavia_capensis
ENSDARG00000101047	rtcb	100	93.861	ENSPCOG00000017243	RTCB	100	93.861	Propithecus_coquereli
ENSDARG00000101047	rtcb	93	92.979	ENSPVAG00000002380	RTCB	100	92.979	Pteropus_vampyrus
ENSDARG00000101047	rtcb	100	95.050	ENSPNYG00000022760	rtcb	100	95.050	Pundamilia_nyererei
ENSDARG00000101047	rtcb	100	96.634	ENSPNAG00000009209	rtcb	100	96.634	Pygocentrus_nattereri
ENSDARG00000101047	rtcb	100	94.059	ENSRNOG00000004813	Rtcb	100	94.059	Rattus_norvegicus
ENSDARG00000101047	rtcb	100	85.771	ENSRBIG00000042090	RTCB	100	85.771	Rhinopithecus_bieti
ENSDARG00000101047	rtcb	100	89.109	ENSSBOG00000020085	-	100	89.109	Saimiri_boliviensis_boliviensis
ENSDARG00000101047	rtcb	94	94.726	ENSSHAG00000016277	RTCB	100	94.726	Sarcophilus_harrisii
ENSDARG00000101047	rtcb	100	96.040	ENSSFOG00015000763	rtcb	100	96.040	Scleropages_formosus
ENSDARG00000101047	rtcb	100	94.851	ENSSFOG00015011572	RTCB	100	94.851	Scleropages_formosus
ENSDARG00000101047	rtcb	100	94.257	ENSSMAG00000005096	rtcb	100	94.257	Scophthalmus_maximus
ENSDARG00000101047	rtcb	100	96.040	ENSSDUG00000012605	rtcb	100	96.040	Seriola_dumerili
ENSDARG00000101047	rtcb	100	95.842	ENSSLDG00000019458	rtcb	100	95.842	Seriola_lalandi_dorsalis
ENSDARG00000101047	rtcb	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSDARG00000101047	rtcb	100	93.267	ENSSPUG00000012814	RTCB	100	93.267	Sphenodon_punctatus
ENSDARG00000101047	rtcb	100	96.832	ENSSPAG00000004623	rtcb	100	96.832	Stegastes_partitus
ENSDARG00000101047	rtcb	100	94.059	ENSSSCG00000000158	RTCB	100	94.059	Sus_scrofa
ENSDARG00000101047	rtcb	100	95.050	ENSTGUG00000010947	RTCB	99	95.050	Taeniopygia_guttata
ENSDARG00000101047	rtcb	91	97.174	ENSTRUG00000009880	rtcb	100	97.174	Takifugu_rubripes
ENSDARG00000101047	rtcb	100	95.248	ENSTNIG00000002484	rtcb	100	95.248	Tetraodon_nigroviridis
ENSDARG00000101047	rtcb	100	80.990	ENSTBEG00000004418	RTCB	100	80.990	Tupaia_belangeri
ENSDARG00000101047	rtcb	93	92.766	ENSTTRG00000006417	RTCB	100	92.766	Tursiops_truncatus
ENSDARG00000101047	rtcb	100	94.059	ENSUAMG00000022792	RTCB	100	94.059	Ursus_americanus
ENSDARG00000101047	rtcb	100	94.059	ENSUMAG00000017225	RTCB	100	94.059	Ursus_maritimus
ENSDARG00000101047	rtcb	100	93.861	ENSVPAG00000005375	RTCB	100	93.861	Vicugna_pacos
ENSDARG00000101047	rtcb	100	94.059	ENSVVUG00000023408	RTCB	100	94.103	Vulpes_vulpes
ENSDARG00000101047	rtcb	100	94.653	ENSXETG00000011523	rtcb	100	94.653	Xenopus_tropicalis
ENSDARG00000101047	rtcb	100	95.644	ENSXMAG00000002855	rtcb	100	95.644	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000971	tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate	21873635.	IBA	Process
GO:0003972	RNA ligase (ATP) activity	21873635.	IBA	Function
GO:0003972	RNA ligase (ATP) activity	-	IEA	Function
GO:0003972	RNA ligase (ATP) activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISS	Component
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	21873635.	IBA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	IEA	Process
GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	-	ISS	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0008033	tRNA processing	-	IEA	Process
GO:0008452	RNA ligase activity	-	IEA	Function
GO:0016874	ligase activity	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0072669	tRNA-splicing ligase complex	21873635.	IBA	Component
GO:0072669	tRNA-splicing ligase complex	-	IEA	Component
GO:0072669	tRNA-splicing ligase complex	-	ISS	Component