EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000101323 (Gene tree)
Gene ID: 553636
Gene Symbol: trnau1apa
Alias: trnau1ap|zgc:110606
Full Name: tRNA selenocysteine 1 associated protein 1a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 9605 bases
Position: chr19:13923600-13933204
Accession: ZDB-GENE-050522-502
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000141333	RRM_1	PF00076.22	2.4e-26	1	2
ENSDARP00000141333	RRM_1	PF00076.22	2.4e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000159545	-	875	-	-	- (aa)	-	-
ENSDART00000158059	-	2479	-	ENSDARP00000141333	314 (aa)	-	Q503H1

Gene Model

Click here to download ENSDARG00000101323's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000101323's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000101323	trnau1apa	89	37.667	ENSDARG00000056475	trnau1apb	94	40.134

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000101323	trnau1apa	88	51.957	ENSG00000180098	TRNAU1AP	95	53.571	Homo_sapiens
ENSDARG00000101323	trnau1apa	95	50.489	ENSAPOG00000007148	TRNAU1AP	99	50.489	Acanthochromis_polyacanthus
ENSDARG00000101323	trnau1apa	88	52.313	ENSAMEG00000011367	TRNAU1AP	95	53.004	Ailuropoda_melanoleuca
ENSDARG00000101323	trnau1apa	95	51.780	ENSACIG00000004161	trnau1apa	99	51.780	Amphilophus_citrinellus
ENSDARG00000101323	trnau1apa	95	51.148	ENSAOCG00000008056	trnau1apa	99	51.148	Amphiprion_ocellaris
ENSDARG00000101323	trnau1apa	95	52.349	ENSAPEG00000008868	trnau1apa	99	52.508	Amphiprion_percula
ENSDARG00000101323	trnau1apa	95	48.137	ENSATEG00000012140	trnau1apa	99	49.842	Anabas_testudineus
ENSDARG00000101323	trnau1apa	88	50.179	ENSAPLG00000002606	TRNAU1AP	99	50.178	Anas_platyrhynchos
ENSDARG00000101323	trnau1apa	65	31.731	ENSACAG00000004205	-	69	34.197	Anolis_carolinensis
ENSDARG00000101323	trnau1apa	89	42.857	ENSACAG00000003995	-	96	43.151	Anolis_carolinensis
ENSDARG00000101323	trnau1apa	88	51.957	ENSANAG00000018976	TRNAU1AP	95	53.571	Aotus_nancymaae
ENSDARG00000101323	trnau1apa	95	50.637	ENSACLG00000018515	trnau1apa	99	52.769	Astatotilapia_calliptera
ENSDARG00000101323	trnau1apa	96	61.311	ENSAMXG00000013750	trnau1apa	99	61.311	Astyanax_mexicanus
ENSDARG00000101323	trnau1apa	88	51.957	ENSBTAG00000010393	TRNAU1AP	95	53.571	Bos_taurus
ENSDARG00000101323	trnau1apa	88	51.957	ENSCJAG00000009717	TRNAU1AP	86	68.056	Callithrix_jacchus
ENSDARG00000101323	trnau1apa	89	51.761	ENSCAFG00000011735	TRNAU1AP	96	53.357	Canis_familiaris
ENSDARG00000101323	trnau1apa	89	51.761	ENSCAFG00020023584	TRNAU1AP	96	53.357	Canis_lupus_dingo
ENSDARG00000101323	trnau1apa	88	51.957	ENSCHIG00000023215	TRNAU1AP	95	53.571	Capra_hircus
ENSDARG00000101323	trnau1apa	88	51.957	ENSTSYG00000003506	TRNAU1AP	86	68.056	Carlito_syrichta
ENSDARG00000101323	trnau1apa	89	51.761	ENSCPOG00000001925	TRNAU1AP	96	53.357	Cavia_porcellus
ENSDARG00000101323	trnau1apa	88	51.957	ENSCCAG00000037506	TRNAU1AP	86	68.056	Cebus_capucinus
ENSDARG00000101323	trnau1apa	88	51.957	ENSCATG00000044617	TRNAU1AP	86	68.056	Cercocebus_atys
ENSDARG00000101323	trnau1apa	89	51.408	ENSCLAG00000008223	TRNAU1AP	96	53.357	Chinchilla_lanigera
ENSDARG00000101323	trnau1apa	88	51.957	ENSCSAG00000001014	TRNAU1AP	95	53.571	Chlorocebus_sabaeus
ENSDARG00000101323	trnau1apa	85	48.708	ENSCPBG00000000121	TRNAU1AP	96	51.852	Chrysemys_picta_bellii
ENSDARG00000101323	trnau1apa	52	43.636	ENSCSAVG00000011781	-	87	43.636	Ciona_savignyi
ENSDARG00000101323	trnau1apa	88	43.772	ENSCANG00000041949	TRNAU1AP	94	45.357	Colobus_angolensis_palliatus
ENSDARG00000101323	trnau1apa	88	51.957	ENSCGRG00001004713	Trnau1ap	95	53.571	Cricetulus_griseus_chok1gshd
ENSDARG00000101323	trnau1apa	88	51.957	ENSCGRG00000014532	Trnau1ap	95	53.571	Cricetulus_griseus_crigri
ENSDARG00000101323	trnau1apa	95	47.134	ENSCSEG00000006663	trnau1apa	99	49.026	Cynoglossus_semilaevis
ENSDARG00000101323	trnau1apa	95	47.727	ENSCVAG00000018069	trnau1apa	99	48.710	Cyprinodon_variegatus
ENSDARG00000101323	trnau1apa	58	54.396	ENSDNOG00000047959	-	94	54.396	Dasypus_novemcinctus
ENSDARG00000101323	trnau1apa	88	51.957	ENSDNOG00000033009	TRNAU1AP	95	53.571	Dasypus_novemcinctus
ENSDARG00000101323	trnau1apa	88	49.110	ENSDORG00000006349	Trnau1ap	95	49.281	Dipodomys_ordii
ENSDARG00000101323	trnau1apa	53	47.904	FBgn0031607	CG15440	50	47.904	Drosophila_melanogaster
ENSDARG00000101323	trnau1apa	75	47.500	ENSETEG00000012594	TRNAU1AP	94	49.372	Echinops_telfairi
ENSDARG00000101323	trnau1apa	88	51.957	ENSEASG00005010062	TRNAU1AP	89	68.056	Equus_asinus_asinus
ENSDARG00000101323	trnau1apa	88	51.957	ENSECAG00000012980	TRNAU1AP	89	68.056	Equus_caballus
ENSDARG00000101323	trnau1apa	95	54.045	ENSELUG00000017686	trnau1apa	99	53.035	Esox_lucius
ENSDARG00000101323	trnau1apa	88	51.957	ENSFCAG00000013401	TRNAU1AP	95	53.571	Felis_catus
ENSDARG00000101323	trnau1apa	85	48.339	ENSFALG00000001371	TRNAU1AP	96	49.817	Ficedula_albicollis
ENSDARG00000101323	trnau1apa	89	51.761	ENSFDAG00000018599	TRNAU1AP	96	53.357	Fukomys_damarensis
ENSDARG00000101323	trnau1apa	69	54.185	ENSFHEG00000018232	trnau1apa	86	49.225	Fundulus_heteroclitus
ENSDARG00000101323	trnau1apa	95	44.872	ENSGMOG00000016508	trnau1apa	99	45.955	Gadus_morhua
ENSDARG00000101323	trnau1apa	59	34.673	ENSGALG00000012721	C2H6orf52	75	34.673	Gallus_gallus
ENSDARG00000101323	trnau1apa	88	50.534	ENSGALG00000001310	-	95	51.237	Gallus_gallus
ENSDARG00000101323	trnau1apa	57	62.921	ENSGAFG00000004928	trnau1apa	83	55.856	Gambusia_affinis
ENSDARG00000101323	trnau1apa	95	51.911	ENSGACG00000001443	trnau1apa	99	52.104	Gasterosteus_aculeatus
ENSDARG00000101323	trnau1apa	85	48.708	ENSGAGG00000004940	TRNAU1AP	96	51.852	Gopherus_agassizii
ENSDARG00000101323	trnau1apa	88	51.957	ENSGGOG00000003511	TRNAU1AP	86	68.056	Gorilla_gorilla
ENSDARG00000101323	trnau1apa	95	49.057	ENSHBUG00000002510	trnau1apa	99	51.125	Haplochromis_burtoni
ENSDARG00000101323	trnau1apa	89	51.761	ENSHGLG00000010380	TRNAU1AP	96	53.357	Heterocephalus_glaber_female
ENSDARG00000101323	trnau1apa	89	49.296	ENSHGLG00100012699	TRNAU1AP	96	50.883	Heterocephalus_glaber_male
ENSDARG00000101323	trnau1apa	87	47.260	ENSHCOG00000014770	trnau1apa	92	47.260	Hippocampus_comes
ENSDARG00000101323	trnau1apa	88	51.957	ENSSTOG00000000079	TRNAU1AP	95	53.571	Ictidomys_tridecemlineatus
ENSDARG00000101323	trnau1apa	88	51.957	ENSJJAG00000010128	Trnau1ap	95	53.571	Jaculus_jaculus
ENSDARG00000101323	trnau1apa	95	49.367	ENSKMAG00000001230	trnau1apa	99	50.318	Kryptolebias_marmoratus
ENSDARG00000101323	trnau1apa	95	48.910	ENSLBEG00000011683	trnau1apa	99	50.159	Labrus_bergylta
ENSDARG00000101323	trnau1apa	90	43.357	ENSLACG00000005541	TRNAU1AP	97	44.366	Latimeria_chalumnae
ENSDARG00000101323	trnau1apa	94	50.809	ENSLOCG00000004041	trnau1apa	99	52.159	Lepisosteus_oculatus
ENSDARG00000101323	trnau1apa	88	52.313	ENSLAFG00000007628	TRNAU1AP	95	53.929	Loxodonta_africana
ENSDARG00000101323	trnau1apa	88	51.957	ENSMFAG00000043751	TRNAU1AP	86	68.056	Macaca_fascicularis
ENSDARG00000101323	trnau1apa	88	51.957	ENSMMUG00000006561	TRNAU1AP	95	53.571	Macaca_mulatta
ENSDARG00000101323	trnau1apa	88	51.957	ENSMNEG00000044201	TRNAU1AP	86	68.056	Macaca_nemestrina
ENSDARG00000101323	trnau1apa	88	51.957	ENSMLEG00000015649	TRNAU1AP	86	68.056	Mandrillus_leucophaeus
ENSDARG00000101323	trnau1apa	95	50.331	ENSMAMG00000001247	trnau1apa	99	51.325	Mastacembelus_armatus
ENSDARG00000101323	trnau1apa	95	50.637	ENSMZEG00005017722	trnau1apa	99	52.769	Maylandia_zebra
ENSDARG00000101323	trnau1apa	86	49.818	ENSMGAG00000002105	TRNAU1AP	96	50.542	Meleagris_gallopavo
ENSDARG00000101323	trnau1apa	88	51.957	ENSMICG00000008386	TRNAU1AP	86	68.056	Microcebus_murinus
ENSDARG00000101323	trnau1apa	88	51.957	ENSMOCG00000011189	Trnau1ap	95	53.571	Microtus_ochrogaster
ENSDARG00000101323	trnau1apa	95	45.847	ENSMMOG00000012107	trnau1apa	99	46.358	Mola_mola
ENSDARG00000101323	trnau1apa	88	51.246	ENSMODG00000010927	TRNAU1AP	95	53.214	Monodelphis_domestica
ENSDARG00000101323	trnau1apa	89	51.027	ENSMALG00000016778	trnau1apa	99	51.456	Monopterus_albus
ENSDARG00000101323	trnau1apa	88	51.957	MGP_CAROLIEiJ_G0026563	Trnau1ap	84	68.056	Mus_caroli
ENSDARG00000101323	trnau1apa	88	51.957	ENSMUSG00000028898	Trnau1ap	84	68.056	Mus_musculus
ENSDARG00000101323	trnau1apa	88	51.957	MGP_PahariEiJ_G0028896	Trnau1ap	93	63.291	Mus_pahari
ENSDARG00000101323	trnau1apa	88	51.957	MGP_SPRETEiJ_G0027544	Trnau1ap	84	68.056	Mus_spretus
ENSDARG00000101323	trnau1apa	88	51.601	ENSMPUG00000015511	TRNAU1AP	95	53.214	Mustela_putorius_furo
ENSDARG00000101323	trnau1apa	88	51.957	ENSMLUG00000012586	TRNAU1AP	95	53.571	Myotis_lucifugus
ENSDARG00000101323	trnau1apa	88	51.957	ENSNGAG00000015881	Trnau1ap	95	53.571	Nannospalax_galili
ENSDARG00000101323	trnau1apa	95	47.541	ENSNBRG00000001758	trnau1apa	99	47.368	Neolamprologus_brichardi
ENSDARG00000101323	trnau1apa	88	51.957	ENSNLEG00000009822	TRNAU1AP	86	68.056	Nomascus_leucogenys
ENSDARG00000101323	trnau1apa	86	50.182	ENSMEUG00000006117	TRNAU1AP	96	52.190	Notamacropus_eugenii
ENSDARG00000101323	trnau1apa	89	51.761	ENSODEG00000002970	TRNAU1AP	96	53.357	Octodon_degus
ENSDARG00000101323	trnau1apa	57	62.431	ENSONIG00000004715	trnau1apa	97	52.632	Oreochromis_niloticus
ENSDARG00000101323	trnau1apa	89	40.845	ENSOANG00000005325	-	96	42.049	Ornithorhynchus_anatinus
ENSDARG00000101323	trnau1apa	88	47.842	ENSOCUG00000002353	-	95	47.842	Oryctolagus_cuniculus
ENSDARG00000101323	trnau1apa	88	50.890	ENSOCUG00000011704	-	95	51.601	Oryctolagus_cuniculus
ENSDARG00000101323	trnau1apa	82	41.985	ENSOCUG00000006834	-	98	41.985	Oryctolagus_cuniculus
ENSDARG00000101323	trnau1apa	95	48.505	ENSORLG00000010428	trnau1apa	99	49.032	Oryzias_latipes
ENSDARG00000101323	trnau1apa	95	47.742	ENSORLG00020000926	trnau1ap	99	49.032	Oryzias_latipes_hni
ENSDARG00000101323	trnau1apa	95	47.742	ENSORLG00015009858	trnau1ap	99	49.032	Oryzias_latipes_hsok
ENSDARG00000101323	trnau1apa	95	49.026	ENSOMEG00000007873	trnau1apa	99	50.325	Oryzias_melastigma
ENSDARG00000101323	trnau1apa	88	51.957	ENSOGAG00000002274	TRNAU1AP	95	53.571	Otolemur_garnettii
ENSDARG00000101323	trnau1apa	88	51.957	ENSOARG00000002843	TRNAU1AP	95	53.571	Ovis_aries
ENSDARG00000101323	trnau1apa	88	51.957	ENSPPAG00000033927	TRNAU1AP	86	68.056	Pan_paniscus
ENSDARG00000101323	trnau1apa	88	51.957	ENSPPRG00000004416	TRNAU1AP	95	53.571	Panthera_pardus
ENSDARG00000101323	trnau1apa	88	51.957	ENSPTIG00000016677	TRNAU1AP	95	53.571	Panthera_tigris_altaica
ENSDARG00000101323	trnau1apa	82	46.332	ENSPTRG00000000434	-	92	46.947	Pan_troglodytes
ENSDARG00000101323	trnau1apa	88	51.957	ENSPANG00000016019	TRNAU1AP	86	68.056	Papio_anubis
ENSDARG00000101323	trnau1apa	89	52.962	ENSPKIG00000015511	trnau1apa	93	52.962	Paramormyrops_kingsleyae
ENSDARG00000101323	trnau1apa	91	71.429	ENSPKIG00000022205	-	100	71.429	Paramormyrops_kingsleyae
ENSDARG00000101323	trnau1apa	85	49.815	ENSPSIG00000006864	TRNAU1AP	96	51.481	Pelodiscus_sinensis
ENSDARG00000101323	trnau1apa	92	47.423	ENSPMGG00000023893	trnau1apa	96	47.423	Periophthalmus_magnuspinnatus
ENSDARG00000101323	trnau1apa	88	51.957	ENSPEMG00000007877	Trnau1ap	95	53.571	Peromyscus_maniculatus_bairdii
ENSDARG00000101323	trnau1apa	55	50.000	ENSPMAG00000000592	trnau1apa	97	50.000	Petromyzon_marinus
ENSDARG00000101323	trnau1apa	63	46.000	ENSPMAG00000005934	trnau1apa	86	46.000	Petromyzon_marinus
ENSDARG00000101323	trnau1apa	95	47.267	ENSPFOG00000008100	trnau1apa	99	49.032	Poecilia_formosa
ENSDARG00000101323	trnau1apa	91	46.154	ENSPLAG00000010236	trnau1apa	99	47.987	Poecilia_latipinna
ENSDARG00000101323	trnau1apa	95	45.955	ENSPMEG00000016387	trnau1apa	97	47.727	Poecilia_mexicana
ENSDARG00000101323	trnau1apa	93	47.423	ENSPREG00000019821	trnau1apa	94	48.110	Poecilia_reticulata
ENSDARG00000101323	trnau1apa	81	40.625	ENSPPYG00000001639	-	95	43.580	Pongo_abelii
ENSDARG00000101323	trnau1apa	87	42.909	ENSPCOG00000023470	-	95	43.478	Propithecus_coquereli
ENSDARG00000101323	trnau1apa	88	51.957	ENSPCOG00000027712	-	95	53.571	Propithecus_coquereli
ENSDARG00000101323	trnau1apa	88	51.957	ENSPVAG00000017214	TRNAU1AP	95	53.571	Pteropus_vampyrus
ENSDARG00000101323	trnau1apa	95	49.843	ENSPNYG00000010130	trnau1apa	99	51.923	Pundamilia_nyererei
ENSDARG00000101323	trnau1apa	96	59.076	ENSPNAG00000024905	trnau1apa	98	59.076	Pygocentrus_nattereri
ENSDARG00000101323	trnau1apa	78	51.210	ENSRNOG00000055344	Trnau1ap	82	53.036	Rattus_norvegicus
ENSDARG00000101323	trnau1apa	88	51.957	ENSRBIG00000029083	TRNAU1AP	86	68.056	Rhinopithecus_bieti
ENSDARG00000101323	trnau1apa	88	51.957	ENSRROG00000029128	TRNAU1AP	86	68.056	Rhinopithecus_roxellana
ENSDARG00000101323	trnau1apa	88	51.957	ENSSBOG00000021299	TRNAU1AP	86	68.056	Saimiri_boliviensis_boliviensis
ENSDARG00000101323	trnau1apa	88	50.890	ENSSHAG00000008108	TRNAU1AP	95	52.857	Sarcophilus_harrisii
ENSDARG00000101323	trnau1apa	95	46.541	ENSSMAG00000020851	trnau1apa	99	48.742	Scophthalmus_maximus
ENSDARG00000101323	trnau1apa	95	50.314	ENSSDUG00000011734	trnau1apa	99	51.118	Seriola_dumerili
ENSDARG00000101323	trnau1apa	95	40.523	ENSSLDG00000012101	trnau1apa	99	43.144	Seriola_lalandi_dorsalis
ENSDARG00000101323	trnau1apa	86	51.273	ENSSARG00000007536	TRNAU1AP	96	52.920	Sorex_araneus
ENSDARG00000101323	trnau1apa	88	47.687	ENSSPUG00000010400	-	95	48.763	Sphenodon_punctatus
ENSDARG00000101323	trnau1apa	54	39.773	ENSSPUG00000010415	-	94	39.773	Sphenodon_punctatus
ENSDARG00000101323	trnau1apa	95	50.479	ENSSPAG00000005029	trnau1apa	99	51.118	Stegastes_partitus
ENSDARG00000101323	trnau1apa	88	51.957	ENSSSCG00000030284	TRNAU1AP	95	53.571	Sus_scrofa
ENSDARG00000101323	trnau1apa	59	36.458	ENSTGUG00000005908	-	93	36.458	Taeniopygia_guttata
ENSDARG00000101323	trnau1apa	86	49.455	ENSTGUG00000000735	-	96	50.181	Taeniopygia_guttata
ENSDARG00000101323	trnau1apa	95	51.438	ENSTRUG00000003352	trnau1apa	99	51.438	Takifugu_rubripes
ENSDARG00000101323	trnau1apa	95	49.675	ENSTNIG00000006129	trnau1apa	99	49.675	Tetraodon_nigroviridis
ENSDARG00000101323	trnau1apa	75	45.000	ENSTBEG00000008049	-	94	45.378	Tupaia_belangeri
ENSDARG00000101323	trnau1apa	88	51.957	ENSTTRG00000001854	TRNAU1AP	95	53.571	Tursiops_truncatus
ENSDARG00000101323	trnau1apa	85	50.554	ENSUAMG00000008789	TRNAU1AP	96	52.222	Ursus_americanus
ENSDARG00000101323	trnau1apa	88	51.957	ENSUMAG00000011068	TRNAU1AP	95	53.571	Ursus_maritimus
ENSDARG00000101323	trnau1apa	89	44.558	ENSVPAG00000006778	TRNAU1AP	96	46.075	Vicugna_pacos
ENSDARG00000101323	trnau1apa	89	50.352	ENSVVUG00000012518	TRNAU1AP	90	51.943	Vulpes_vulpes
ENSDARG00000101323	trnau1apa	95	46.429	ENSXMAG00000017361	trnau1apa	99	49.355	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006376	mRNA splice site selection	21873635.	IBA	Process
GO:0006412	translation	-	IEA	Process