EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000101722 (Gene tree)
Gene ID: 327175
Gene Symbol: larp1
Alias: wu:fb92d03|wu:fd15e07
Full Name: La ribonucleoprotein domain family%2C member 1
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 15424 bases
Position: chr21:45856443-45871866
Accession: ZDB-GENE-030131-5386
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000137117	La	PF05383.17	2.5e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000161716	-	2910	XM_001920867	ENSDARP00000137117	969 (aa)	XP_001920902	F1R0U5

Gene Model

Click here to download ENSDARG00000101722's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000101722's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000101722	larp1	94	53.830	ENSDARG00000061169	larp1b	84	54.669

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000101722	larp1	92	66.105	ENSG00000155506	LARP1	90	79.394	Homo_sapiens
ENSDARG00000101722	larp1	90	88.018	ENSAPOG00000020685	larp1	99	88.018	Acanthochromis_polyacanthus
ENSDARG00000101722	larp1	92	66.073	ENSAMEG00000016673	LARP1	99	66.282	Ailuropoda_melanoleuca
ENSDARG00000101722	larp1	96	70.043	ENSACIG00000012994	larp1	89	68.658	Amphilophus_citrinellus
ENSDARG00000101722	larp1	82	76.784	ENSAOCG00000007792	larp1	97	77.411	Amphiprion_ocellaris
ENSDARG00000101722	larp1	98	70.849	ENSAPEG00000022246	larp1	98	70.849	Amphiprion_percula
ENSDARG00000101722	larp1	94	73.913	ENSATEG00000013523	larp1	90	71.429	Anabas_testudineus
ENSDARG00000101722	larp1	87	69.707	ENSAPLG00000007559	LARP1	100	69.595	Anas_platyrhynchos
ENSDARG00000101722	larp1	92	66.390	ENSACAG00000004071	LARP1	97	69.540	Anolis_carolinensis
ENSDARG00000101722	larp1	92	66.000	ENSANAG00000029949	LARP1	99	63.655	Aotus_nancymaae
ENSDARG00000101722	larp1	95	72.967	ENSACLG00000015256	larp1	99	71.853	Astatotilapia_calliptera
ENSDARG00000101722	larp1	96	76.335	ENSAMXG00000000859	larp1	92	75.413	Astyanax_mexicanus
ENSDARG00000101722	larp1	92	67.328	ENSBTAG00000008443	LARP1	90	65.800	Bos_taurus
ENSDARG00000101722	larp1	95	65.479	ENSCJAG00000004454	LARP1	92	66.209	Callithrix_jacchus
ENSDARG00000101722	larp1	92	65.969	ENSCAFG00000017639	LARP1	99	66.176	Canis_familiaris
ENSDARG00000101722	larp1	87	67.986	ENSCAFG00020023860	LARP1	98	68.218	Canis_lupus_dingo
ENSDARG00000101722	larp1	94	66.495	ENSCHIG00000014414	LARP1	92	63.948	Capra_hircus
ENSDARG00000101722	larp1	96	64.813	ENSTSYG00000013732	LARP1	98	65.231	Carlito_syrichta
ENSDARG00000101722	larp1	81	68.402	ENSCAPG00000013865	LARP1	83	66.829	Cavia_aperea
ENSDARG00000101722	larp1	89	67.745	ENSCPOG00000003377	LARP1	99	66.316	Cavia_porcellus
ENSDARG00000101722	larp1	95	65.275	ENSCCAG00000025201	LARP1	92	65.998	Cebus_capucinus
ENSDARG00000101722	larp1	95	63.525	ENSCATG00000030675	LARP1	92	66.209	Cercocebus_atys
ENSDARG00000101722	larp1	92	66.352	ENSCLAG00000012755	LARP1	99	65.053	Chinchilla_lanigera
ENSDARG00000101722	larp1	87	66.018	ENSCSAG00000010800	LARP1	98	66.133	Chlorocebus_sabaeus
ENSDARG00000101722	larp1	89	63.328	ENSCHOG00000012716	LARP1	92	63.328	Choloepus_hoffmanni
ENSDARG00000101722	larp1	93	69.645	ENSCPBG00000002173	LARP1	93	68.872	Chrysemys_picta_bellii
ENSDARG00000101722	larp1	92	66.316	ENSCANG00000037418	LARP1	92	66.420	Colobus_angolensis_palliatus
ENSDARG00000101722	larp1	95	65.587	ENSCGRG00001016913	Larp1	92	65.331	Cricetulus_griseus_chok1gshd
ENSDARG00000101722	larp1	89	64.410	ENSCGRG00000009916	Larp1	99	64.410	Cricetulus_griseus_crigri
ENSDARG00000101722	larp1	99	69.619	ENSCSEG00000016431	larp1	99	69.274	Cynoglossus_semilaevis
ENSDARG00000101722	larp1	96	73.231	ENSCVAG00000022687	larp1	91	71.633	Cyprinodon_variegatus
ENSDARG00000101722	larp1	95	64.736	ENSDNOG00000012073	LARP1	92	64.194	Dasypus_novemcinctus
ENSDARG00000101722	larp1	92	64.775	ENSDORG00000002897	Larp1	98	64.775	Dipodomys_ordii
ENSDARG00000101722	larp1	86	67.568	ENSETEG00000020251	LARP1	100	67.684	Echinops_telfairi
ENSDARG00000101722	larp1	95	65.314	ENSEASG00005001070	LARP1	90	64.900	Equus_asinus_asinus
ENSDARG00000101722	larp1	95	65.314	ENSECAG00000017002	LARP1	71	66.596	Equus_caballus
ENSDARG00000101722	larp1	90	63.538	ENSEEUG00000001065	LARP1	99	63.509	Erinaceus_europaeus
ENSDARG00000101722	larp1	96	73.824	ENSELUG00000019403	larp1	91	74.335	Esox_lucius
ENSDARG00000101722	larp1	95	65.517	ENSFCAG00000000592	LARP1	93	64.681	Felis_catus
ENSDARG00000101722	larp1	83	70.762	ENSFALG00000008335	LARP1	99	72.482	Ficedula_albicollis
ENSDARG00000101722	larp1	92	66.212	ENSFDAG00000021125	LARP1	99	66.316	Fukomys_damarensis
ENSDARG00000101722	larp1	55	68.345	ENSFHEG00000020307	larp1	92	70.091	Fundulus_heteroclitus
ENSDARG00000101722	larp1	97	67.647	ENSGALG00000040109	LARP1	99	66.769	Gallus_gallus
ENSDARG00000101722	larp1	97	65.494	ENSGAGG00000025113	LARP1	94	71.328	Gopherus_agassizii
ENSDARG00000101722	larp1	92	66.105	ENSGGOG00000006048	LARP1	92	66.209	Gorilla_gorilla
ENSDARG00000101722	larp1	95	73.544	ENSHBUG00000020762	larp1	99	71.914	Haplochromis_burtoni
ENSDARG00000101722	larp1	98	64.103	ENSHGLG00000006267	LARP1	92	64.173	Heterocephalus_glaber_female
ENSDARG00000101722	larp1	92	66.178	ENSHGLG00100014230	-	99	66.282	Heterocephalus_glaber_male
ENSDARG00000101722	larp1	96	56.212	ENSHGLG00100003395	-	92	55.271	Heterocephalus_glaber_male
ENSDARG00000101722	larp1	87	84.375	ENSHCOG00000010786	larp1	90	84.375	Hippocampus_comes
ENSDARG00000101722	larp1	98	73.980	ENSIPUG00000019105	Larp1	99	72.653	Ictalurus_punctatus
ENSDARG00000101722	larp1	92	65.306	ENSSTOG00000005678	LARP1	98	64.241	Ictidomys_tridecemlineatus
ENSDARG00000101722	larp1	96	61.271	ENSJJAG00000016950	Larp1	99	59.680	Jaculus_jaculus
ENSDARG00000101722	larp1	97	71.053	ENSKMAG00000018468	larp1	97	73.305	Kryptolebias_marmoratus
ENSDARG00000101722	larp1	96	72.004	ENSLBEG00000027172	larp1	99	67.606	Labrus_bergylta
ENSDARG00000101722	larp1	94	73.579	ENSLOCG00000012457	larp1	99	73.789	Lepisosteus_oculatus
ENSDARG00000101722	larp1	95	65.010	ENSLAFG00000008991	LARP1	93	64.279	Loxodonta_africana
ENSDARG00000101722	larp1	92	65.789	ENSMFAG00000031651	LARP1	92	65.998	Macaca_fascicularis
ENSDARG00000101722	larp1	92	63.771	ENSMMUG00000009411	LARP1	99	63.771	Macaca_mulatta
ENSDARG00000101722	larp1	87	67.727	ENSMNEG00000039294	LARP1	98	67.959	Macaca_nemestrina
ENSDARG00000101722	larp1	92	66.105	ENSMLEG00000035142	LARP1	92	66.315	Mandrillus_leucophaeus
ENSDARG00000101722	larp1	96	72.813	ENSMAMG00000021788	larp1	99	68.533	Mastacembelus_armatus
ENSDARG00000101722	larp1	95	72.967	ENSMZEG00005009345	larp1	99	71.853	Maylandia_zebra
ENSDARG00000101722	larp1	92	67.204	ENSMGAG00000005696	LARP1	99	67.312	Meleagris_gallopavo
ENSDARG00000101722	larp1	95	65.486	ENSMAUG00000001385	Larp1	92	65.296	Mesocricetus_auratus
ENSDARG00000101722	larp1	92	65.582	ENSMICG00000000837	LARP1	98	68.295	Microcebus_murinus
ENSDARG00000101722	larp1	95	65.587	ENSMOCG00000008920	Larp1	92	65.331	Microtus_ochrogaster
ENSDARG00000101722	larp1	91	55.391	ENSMMOG00000013364	larp1	99	54.396	Mola_mola
ENSDARG00000101722	larp1	92	65.433	ENSMODG00000008663	LARP1	98	65.433	Monodelphis_domestica
ENSDARG00000101722	larp1	99	69.849	ENSMALG00000017180	larp1	99	69.943	Monopterus_albus
ENSDARG00000101722	larp1	95	65.587	MGP_CAROLIEiJ_G0016383	Larp1	92	65.331	Mus_caroli
ENSDARG00000101722	larp1	95	65.688	ENSMUSG00000037331	Larp1	92	65.431	Mus_musculus
ENSDARG00000101722	larp1	97	64.940	MGP_PahariEiJ_G0017518	Larp1	92	65.035	Mus_pahari
ENSDARG00000101722	larp1	96	65.559	MGP_SPRETEiJ_G0017225	Larp1	92	65.657	Mus_spretus
ENSDARG00000101722	larp1	76	64.286	ENSMPUG00000013564	LARP1	89	63.793	Mustela_putorius_furo
ENSDARG00000101722	larp1	92	63.087	ENSMLUG00000002608	LARP1	99	63.494	Myotis_lucifugus
ENSDARG00000101722	larp1	92	64.946	ENSNGAG00000001098	Larp1	98	65.161	Nannospalax_galili
ENSDARG00000101722	larp1	92	75.297	ENSNBRG00000008963	larp1	94	75.135	Neolamprologus_brichardi
ENSDARG00000101722	larp1	92	66.064	ENSNLEG00000016588	LARP1	98	64.141	Nomascus_leucogenys
ENSDARG00000101722	larp1	92	62.527	ENSMEUG00000002957	LARP1	99	62.527	Notamacropus_eugenii
ENSDARG00000101722	larp1	92	66.387	ENSOPRG00000013014	LARP1	99	66.386	Ochotona_princeps
ENSDARG00000101722	larp1	92	66.002	ENSODEG00000010824	LARP1	99	66.105	Octodon_degus
ENSDARG00000101722	larp1	95	72.442	ENSONIG00000017308	larp1	99	67.769	Oreochromis_niloticus
ENSDARG00000101722	larp1	92	67.017	ENSOANG00000005096	LARP1	97	67.017	Ornithorhynchus_anatinus
ENSDARG00000101722	larp1	95	65.720	ENSOCUG00000013066	LARP1	91	65.559	Oryctolagus_cuniculus
ENSDARG00000101722	larp1	99	68.897	ENSORLG00000000824	larp1	99	75.971	Oryzias_latipes
ENSDARG00000101722	larp1	99	68.933	ENSORLG00020022241	larp1	99	69.122	Oryzias_latipes_hni
ENSDARG00000101722	larp1	95	73.575	ENSORLG00015007538	larp1	99	68.057	Oryzias_latipes_hsok
ENSDARG00000101722	larp1	99	68.506	ENSOMEG00000003134	larp1	99	68.696	Oryzias_melastigma
ENSDARG00000101722	larp1	92	66.143	ENSOGAG00000016750	LARP1	99	66.246	Otolemur_garnettii
ENSDARG00000101722	larp1	90	67.028	ENSOARG00000009893	LARP1	99	65.506	Ovis_aries
ENSDARG00000101722	larp1	92	66.105	ENSPPAG00000042993	LARP1	92	66.209	Pan_paniscus
ENSDARG00000101722	larp1	92	65.199	ENSPPRG00000009780	LARP1	93	64.564	Panthera_pardus
ENSDARG00000101722	larp1	92	65.474	ENSPTIG00000007013	LARP1	93	65.121	Panthera_tigris_altaica
ENSDARG00000101722	larp1	95	63.525	ENSPTRG00000017447	LARP1	92	66.209	Pan_troglodytes
ENSDARG00000101722	larp1	96	64.134	ENSPANG00000008080	LARP1	95	64.329	Papio_anubis
ENSDARG00000101722	larp1	94	69.040	ENSPKIG00000017153	-	88	70.181	Paramormyrops_kingsleyae
ENSDARG00000101722	larp1	97	75.439	ENSPKIG00000010096	larp1	91	75.851	Paramormyrops_kingsleyae
ENSDARG00000101722	larp1	94	74.973	ENSPMGG00000011599	larp1	97	74.973	Periophthalmus_magnuspinnatus
ENSDARG00000101722	larp1	92	64.769	ENSPEMG00000022523	Larp1	98	64.662	Peromyscus_maniculatus_bairdii
ENSDARG00000101722	larp1	92	67.910	ENSPCIG00000019242	LARP1	88	61.397	Phascolarctos_cinereus
ENSDARG00000101722	larp1	93	72.393	ENSPFOG00000005836	larp1	92	71.076	Poecilia_formosa
ENSDARG00000101722	larp1	93	74.685	ENSPLAG00000008936	larp1	92	73.151	Poecilia_latipinna
ENSDARG00000101722	larp1	93	72.354	ENSPMEG00000013656	larp1	92	71.032	Poecilia_mexicana
ENSDARG00000101722	larp1	91	72.824	ENSPREG00000005726	larp1	99	71.798	Poecilia_reticulata
ENSDARG00000101722	larp1	92	63.836	ENSPCAG00000006407	LARP1	99	64.067	Procavia_capensis
ENSDARG00000101722	larp1	92	59.139	ENSPCOG00000016949	LARP1	99	61.789	Propithecus_coquereli
ENSDARG00000101722	larp1	95	65.720	ENSPVAG00000002262	LARP1	90	65.300	Pteropus_vampyrus
ENSDARG00000101722	larp1	95	73.143	ENSPNYG00000007938	larp1	99	71.955	Pundamilia_nyererei
ENSDARG00000101722	larp1	100	71.165	ENSPNAG00000021427	larp1	100	72.718	Pygocentrus_nattereri
ENSDARG00000101722	larp1	92	64.592	ENSRNOG00000031544	Larp1	98	64.592	Rattus_norvegicus
ENSDARG00000101722	larp1	92	66.211	ENSRBIG00000038005	LARP1	92	66.315	Rhinopithecus_bieti
ENSDARG00000101722	larp1	92	66.105	ENSRROG00000034073	LARP1	98	68.301	Rhinopithecus_roxellana
ENSDARG00000101722	larp1	92	65.964	ENSSBOG00000019816	LARP1	99	63.915	Saimiri_boliviensis_boliviensis
ENSDARG00000101722	larp1	92	66.952	ENSSHAG00000011115	LARP1	99	66.952	Sarcophilus_harrisii
ENSDARG00000101722	larp1	99	68.726	ENSSFOG00015018058	-	99	68.756	Scleropages_formosus
ENSDARG00000101722	larp1	93	72.356	ENSSFOG00015020304	larp1	96	70.672	Scleropages_formosus
ENSDARG00000101722	larp1	90	76.094	ENSSMAG00000007468	larp1	98	69.324	Scophthalmus_maximus
ENSDARG00000101722	larp1	96	71.713	ENSSDUG00000000268	larp1	98	73.410	Seriola_dumerili
ENSDARG00000101722	larp1	88	73.642	ENSSLDG00000016505	larp1	98	73.526	Seriola_lalandi_dorsalis
ENSDARG00000101722	larp1	60	77.091	ENSSARG00000013907	-	87	77.091	Sorex_araneus
ENSDARG00000101722	larp1	95	68.244	ENSSPUG00000012179	-	88	67.917	Sphenodon_punctatus
ENSDARG00000101722	larp1	96	73.679	ENSSPAG00000003910	larp1	99	69.116	Stegastes_partitus
ENSDARG00000101722	larp1	95	65.416	ENSSSCG00000017069	LARP1	98	67.914	Sus_scrofa
ENSDARG00000101722	larp1	89	68.231	ENSTGUG00000000704	LARP1	100	68.341	Taeniopygia_guttata
ENSDARG00000101722	larp1	96	73.029	ENSTRUG00000009470	larp1	99	68.887	Takifugu_rubripes
ENSDARG00000101722	larp1	86	66.592	ENSTBEG00000003381	LARP1	100	66.592	Tupaia_belangeri
ENSDARG00000101722	larp1	91	66.098	ENSTTRG00000015934	LARP1	99	66.211	Tursiops_truncatus
ENSDARG00000101722	larp1	95	65.314	ENSUAMG00000019334	LARP1	90	64.900	Ursus_americanus
ENSDARG00000101722	larp1	92	64.513	ENSUMAG00000002934	LARP1	96	67.552	Ursus_maritimus
ENSDARG00000101722	larp1	87	67.986	ENSVVUG00000004644	LARP1	98	68.218	Vulpes_vulpes
ENSDARG00000101722	larp1	96	69.095	ENSXETG00000008413	larp1	98	67.428	Xenopus_tropicalis
ENSDARG00000101722	larp1	83	77.520	ENSXCOG00000004022	larp1	88	77.490	Xiphophorus_couchianus
ENSDARG00000101722	larp1	93	72.222	ENSXMAG00000018780	larp1	92	70.804	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function