EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000101900 (Gene tree)
Gene ID: 321940
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 87660 bases
Position: chr20:48810901-48898560
Accession: ZDB-GENE-040426-2874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000137023	XRN_N	PF03159.18	7.3e-102	1	1
ENSDARP00000138850	XRN_N	PF03159.18	2.5e-101	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162720	-	3262	-	ENSDARP00000135647	540 (aa)	-	Q802V7
ENSDART00000163271	-	818	-	ENSDARP00000137463	273 (aa)	-	A0A0R4IMS1
ENSDART00000170617	-	1623	-	ENSDARP00000137023	540 (aa)	-	Q802V7
ENSDART00000163071	-	3631	XM_005160875	ENSDARP00000138850	952 (aa)	XP_005160932	A0A0R4ISJ3

Gene Model

Click here to download ENSDARG00000101900's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03008	Ribosome biogenesis in eukaryotes	KEGG
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000101900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000101900	xrn2	78	43.059	ENSDARG00000091652	xrn1	98	36.496

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000101900	xrn2	96	77.629	ENSG00000088930	XRN2	100	69.815	Homo_sapiens
ENSDARG00000101900	xrn2	96	86.616	ENSAPOG00000009818	xrn2	100	79.091	Acanthochromis_polyacanthus
ENSDARG00000101900	xrn2	96	78.203	ENSAMEG00000012581	XRN2	100	69.918	Ailuropoda_melanoleuca
ENSDARG00000101900	xrn2	99	82.959	ENSACIG00000015047	xrn2	97	82.959	Amphilophus_citrinellus
ENSDARG00000101900	xrn2	96	87.572	ENSAOCG00000023632	xrn2	100	79.474	Amphiprion_ocellaris
ENSDARG00000101900	xrn2	96	87.380	ENSAPEG00000014871	xrn2	100	79.394	Amphiprion_percula
ENSDARG00000101900	xrn2	96	87.023	ENSATEG00000001273	xrn2	98	80.757	Anabas_testudineus
ENSDARG00000101900	xrn2	92	79.879	ENSAPLG00000013869	XRN2	100	70.688	Anas_platyrhynchos
ENSDARG00000101900	xrn2	96	75.954	ENSACAG00000005565	XRN2	100	69.725	Anolis_carolinensis
ENSDARG00000101900	xrn2	96	77.820	ENSANAG00000020126	XRN2	100	69.713	Aotus_nancymaae
ENSDARG00000101900	xrn2	98	83.677	ENSACLG00000010522	xrn2	97	83.677	Astatotilapia_calliptera
ENSDARG00000101900	xrn2	96	90.458	ENSAMXG00000018301	xrn2	100	83.248	Astyanax_mexicanus
ENSDARG00000101900	xrn2	96	78.626	ENSBTAG00000011304	XRN2	100	69.775	Bos_taurus
ENSDARG00000101900	xrn2	96	56.747	WBGene00006964	xrn-2	89	54.124	Caenorhabditis_elegans
ENSDARG00000101900	xrn2	96	77.820	ENSCJAG00000005611	XRN2	100	69.713	Callithrix_jacchus
ENSDARG00000101900	xrn2	96	78.203	ENSCAFG00000005185	XRN2	100	69.918	Canis_familiaris
ENSDARG00000101900	xrn2	96	78.203	ENSCAFG00020027479	XRN2	100	69.918	Canis_lupus_dingo
ENSDARG00000101900	xrn2	96	77.863	ENSCHIG00000006921	XRN2	100	69.570	Capra_hircus
ENSDARG00000101900	xrn2	96	77.820	ENSTSYG00000008315	XRN2	100	69.507	Carlito_syrichta
ENSDARG00000101900	xrn2	97	58.632	ENSCAPG00000010773	XRN2	99	58.010	Cavia_aperea
ENSDARG00000101900	xrn2	96	78.011	ENSCPOG00000009407	XRN2	100	70.021	Cavia_porcellus
ENSDARG00000101900	xrn2	96	77.629	ENSCATG00000040350	XRN2	100	69.713	Cercocebus_atys
ENSDARG00000101900	xrn2	96	78.203	ENSCLAG00000013419	XRN2	100	69.918	Chinchilla_lanigera
ENSDARG00000101900	xrn2	96	77.629	ENSCSAG00000011094	XRN2	100	69.713	Chlorocebus_sabaeus
ENSDARG00000101900	xrn2	61	88.710	ENSCHOG00000013404	XRN2	63	88.710	Choloepus_hoffmanni
ENSDARG00000101900	xrn2	96	79.159	ENSCPBG00000023533	XRN2	100	70.859	Chrysemys_picta_bellii
ENSDARG00000101900	xrn2	92	66.800	ENSCING00000022336	-	100	60.854	Ciona_intestinalis
ENSDARG00000101900	xrn2	90	70.930	ENSCSAVG00000011217	-	96	71.807	Ciona_savignyi
ENSDARG00000101900	xrn2	96	77.629	ENSCANG00000040240	XRN2	100	69.713	Colobus_angolensis_palliatus
ENSDARG00000101900	xrn2	96	78.394	ENSCGRG00001010676	Xrn2	99	70.737	Cricetulus_griseus_chok1gshd
ENSDARG00000101900	xrn2	92	77.867	ENSCGRG00000006378	Xrn2	99	69.158	Cricetulus_griseus_crigri
ENSDARG00000101900	xrn2	96	76.015	ENSCSEG00000005628	xrn2	100	75.483	Cynoglossus_semilaevis
ENSDARG00000101900	xrn2	96	86.233	ENSCVAG00000018999	xrn2	98	86.424	Cyprinodon_variegatus
ENSDARG00000101900	xrn2	96	77.438	ENSDNOG00000001895	XRN2	100	70.021	Dasypus_novemcinctus
ENSDARG00000101900	xrn2	96	77.820	ENSDORG00000005434	Xrn2	100	68.891	Dipodomys_ordii
ENSDARG00000101900	xrn2	88	64.017	FBgn0031868	Rat1	90	55.530	Drosophila_melanogaster
ENSDARG00000101900	xrn2	91	80.779	ENSETEG00000001740	XRN2	92	80.779	Echinops_telfairi
ENSDARG00000101900	xrn2	96	74.765	ENSEBUG00000016136	xrn2	100	71.864	Eptatretus_burgeri
ENSDARG00000101900	xrn2	96	78.203	ENSEASG00005002484	XRN2	100	70.123	Equus_asinus_asinus
ENSDARG00000101900	xrn2	94	92.308	ENSECAG00000018988	XRN2	96	92.308	Equus_caballus
ENSDARG00000101900	xrn2	75	92.000	ENSEEUG00000009265	XRN2	67	92.000	Erinaceus_europaeus
ENSDARG00000101900	xrn2	96	87.380	ENSELUG00000000552	xrn2	100	78.557	Esox_lucius
ENSDARG00000101900	xrn2	96	78.203	ENSFCAG00000007970	XRN2	100	69.713	Felis_catus
ENSDARG00000101900	xrn2	96	80.806	ENSFALG00000004508	XRN2	100	71.576	Ficedula_albicollis
ENSDARG00000101900	xrn2	96	78.203	ENSFDAG00000016311	XRN2	100	70.021	Fukomys_damarensis
ENSDARG00000101900	xrn2	97	77.505	ENSFHEG00000013039	xrn2	99	77.505	Fundulus_heteroclitus
ENSDARG00000101900	xrn2	87	89.126	ENSGMOG00000013436	xrn2	100	82.048	Gadus_morhua
ENSDARG00000101900	xrn2	96	80.460	ENSGALG00000008372	XRN2	100	70.928	Gallus_gallus
ENSDARG00000101900	xrn2	96	85.086	ENSGAFG00000014284	xrn2	98	81.588	Gambusia_affinis
ENSDARG00000101900	xrn2	100	83.210	ENSGACG00000011870	xrn2	100	83.210	Gasterosteus_aculeatus
ENSDARG00000101900	xrn2	96	79.159	ENSGAGG00000004884	XRN2	100	70.654	Gopherus_agassizii
ENSDARG00000101900	xrn2	96	77.629	ENSGGOG00000013738	XRN2	100	69.713	Gorilla_gorilla
ENSDARG00000101900	xrn2	98	83.490	ENSHBUG00000005077	xrn2	97	83.490	Haplochromis_burtoni
ENSDARG00000101900	xrn2	96	76.673	ENSHGLG00000014831	XRN2	100	69.231	Heterocephalus_glaber_female
ENSDARG00000101900	xrn2	96	76.673	ENSHGLG00100013130	XRN2	100	69.231	Heterocephalus_glaber_male
ENSDARG00000101900	xrn2	96	86.450	ENSHCOG00000011994	xrn2	99	76.547	Hippocampus_comes
ENSDARG00000101900	xrn2	96	88.550	ENSIPUG00000006639	xrn2	100	81.734	Ictalurus_punctatus
ENSDARG00000101900	xrn2	96	77.820	ENSSTOG00000000589	XRN2	100	69.815	Ictidomys_tridecemlineatus
ENSDARG00000101900	xrn2	96	78.203	ENSJJAG00000022128	Xrn2	100	70.123	Jaculus_jaculus
ENSDARG00000101900	xrn2	96	86.100	ENSLBEG00000010041	xrn2	100	86.127	Labrus_bergylta
ENSDARG00000101900	xrn2	93	77.282	ENSLACG00000008307	XRN2	97	75.896	Latimeria_chalumnae
ENSDARG00000101900	xrn2	96	85.057	ENSLOCG00000016874	xrn2	93	82.680	Lepisosteus_oculatus
ENSDARG00000101900	xrn2	96	78.011	ENSLAFG00000014624	XRN2	100	69.918	Loxodonta_africana
ENSDARG00000101900	xrn2	96	77.629	ENSMFAG00000038122	XRN2	100	69.713	Macaca_fascicularis
ENSDARG00000101900	xrn2	96	77.629	ENSMMUG00000011405	XRN2	100	69.713	Macaca_mulatta
ENSDARG00000101900	xrn2	96	77.629	ENSMNEG00000040626	XRN2	100	69.610	Macaca_nemestrina
ENSDARG00000101900	xrn2	96	77.629	ENSMLEG00000041897	XRN2	100	69.713	Mandrillus_leucophaeus
ENSDARG00000101900	xrn2	96	87.023	ENSMAMG00000008633	xrn2	99	79.321	Mastacembelus_armatus
ENSDARG00000101900	xrn2	96	87.189	ENSMZEG00005022362	xrn2	97	83.677	Maylandia_zebra
ENSDARG00000101900	xrn2	96	79.658	ENSMGAG00000003196	XRN2	89	76.450	Meleagris_gallopavo
ENSDARG00000101900	xrn2	96	78.203	ENSMAUG00000021842	Xrn2	100	70.226	Mesocricetus_auratus
ENSDARG00000101900	xrn2	96	78.203	ENSMICG00000008126	XRN2	100	69.815	Microcebus_murinus
ENSDARG00000101900	xrn2	96	77.820	ENSMOCG00000012588	Xrn2	100	69.918	Microtus_ochrogaster
ENSDARG00000101900	xrn2	96	86.641	ENSMMOG00000017576	xrn2	96	83.734	Mola_mola
ENSDARG00000101900	xrn2	96	78.394	ENSMODG00000006163	XRN2	100	71.296	Monodelphis_domestica
ENSDARG00000101900	xrn2	99	84.658	ENSMALG00000011355	xrn2	100	84.643	Monopterus_albus
ENSDARG00000101900	xrn2	96	78.394	MGP_CAROLIEiJ_G0024400	Xrn2	100	70.154	Mus_caroli
ENSDARG00000101900	xrn2	96	78.394	ENSMUSG00000027433	Xrn2	100	70.359	Mus_musculus
ENSDARG00000101900	xrn2	96	78.394	MGP_PahariEiJ_G0025843	Xrn2	100	70.154	Mus_pahari
ENSDARG00000101900	xrn2	96	78.394	MGP_SPRETEiJ_G0025318	Xrn2	94	85.149	Mus_spretus
ENSDARG00000101900	xrn2	96	78.203	ENSMPUG00000001198	XRN2	93	68.618	Mustela_putorius_furo
ENSDARG00000101900	xrn2	96	78.352	ENSMLUG00000001536	XRN2	100	70.298	Myotis_lucifugus
ENSDARG00000101900	xrn2	96	78.585	ENSNGAG00000018138	Xrn2	100	70.431	Nannospalax_galili
ENSDARG00000101900	xrn2	96	86.807	ENSNBRG00000008062	xrn2	97	83.302	Neolamprologus_brichardi
ENSDARG00000101900	xrn2	96	77.629	ENSNLEG00000009991	XRN2	100	69.713	Nomascus_leucogenys
ENSDARG00000101900	xrn2	52	86.667	ENSMEUG00000008622	-	53	86.667	Notamacropus_eugenii
ENSDARG00000101900	xrn2	62	74.211	ENSOPRG00000001397	-	63	74.211	Ochotona_princeps
ENSDARG00000101900	xrn2	96	78.011	ENSODEG00000010745	-	100	69.815	Octodon_degus
ENSDARG00000101900	xrn2	94	70.980	ENSODEG00000000860	-	99	64.271	Octodon_degus
ENSDARG00000101900	xrn2	96	86.807	ENSONIG00000018720	xrn2	100	77.259	Oreochromis_niloticus
ENSDARG00000101900	xrn2	96	77.055	ENSOANG00000015673	XRN2	100	69.815	Ornithorhynchus_anatinus
ENSDARG00000101900	xrn2	96	78.011	ENSOCUG00000013468	XRN2	100	69.815	Oryctolagus_cuniculus
ENSDARG00000101900	xrn2	96	84.733	ENSORLG00000017213	xrn2	96	81.766	Oryzias_latipes
ENSDARG00000101900	xrn2	96	84.733	ENSORLG00020001824	xrn2	100	75.531	Oryzias_latipes_hni
ENSDARG00000101900	xrn2	96	84.924	ENSORLG00015019747	xrn2	100	75.583	Oryzias_latipes_hsok
ENSDARG00000101900	xrn2	96	84.542	ENSOMEG00000019820	xrn2	100	76.056	Oryzias_melastigma
ENSDARG00000101900	xrn2	96	78.011	ENSOGAG00000001068	XRN2	100	69.713	Otolemur_garnettii
ENSDARG00000101900	xrn2	92	77.309	ENSOARG00000004443	XRN2	99	69.053	Ovis_aries
ENSDARG00000101900	xrn2	96	77.629	ENSPPAG00000033549	XRN2	100	69.713	Pan_paniscus
ENSDARG00000101900	xrn2	96	78.203	ENSPPRG00000008732	XRN2	100	69.713	Panthera_pardus
ENSDARG00000101900	xrn2	92	77.666	ENSPTIG00000015683	XRN2	97	69.198	Panthera_tigris_altaica
ENSDARG00000101900	xrn2	96	77.629	ENSPTRG00000013308	XRN2	100	69.713	Pan_troglodytes
ENSDARG00000101900	xrn2	96	77.629	ENSPANG00000018088	XRN2	100	69.713	Papio_anubis
ENSDARG00000101900	xrn2	96	88.145	ENSPKIG00000016889	xrn2	100	79.247	Paramormyrops_kingsleyae
ENSDARG00000101900	xrn2	86	78.465	ENSPSIG00000014666	XRN2	99	76.903	Pelodiscus_sinensis
ENSDARG00000101900	xrn2	96	78.585	ENSPEMG00000000111	Xrn2	100	70.021	Peromyscus_maniculatus_bairdii
ENSDARG00000101900	xrn2	61	75.444	ENSPMAG00000002576	xrn2	99	77.219	Petromyzon_marinus
ENSDARG00000101900	xrn2	96	84.704	ENSPFOG00000004182	xrn2	99	75.918	Poecilia_formosa
ENSDARG00000101900	xrn2	96	84.895	ENSPLAG00000007351	xrn2	96	81.473	Poecilia_latipinna
ENSDARG00000101900	xrn2	86	84.222	ENSPMEG00000011798	xrn2	99	75.054	Poecilia_mexicana
ENSDARG00000101900	xrn2	96	84.895	ENSPREG00000012452	xrn2	96	81.473	Poecilia_reticulata
ENSDARG00000101900	xrn2	96	77.629	ENSPPYG00000010755	XRN2	100	69.507	Pongo_abelii
ENSDARG00000101900	xrn2	96	77.820	ENSPCAG00000011191	XRN2	100	66.427	Procavia_capensis
ENSDARG00000101900	xrn2	96	69.025	ENSPCOG00000016468	XRN2	100	63.963	Propithecus_coquereli
ENSDARG00000101900	xrn2	96	65.010	ENSPVAG00000004596	XRN2	93	66.667	Pteropus_vampyrus
ENSDARG00000101900	xrn2	96	83.939	ENSPNYG00000001765	xrn2	96	82.204	Pundamilia_nyererei
ENSDARG00000101900	xrn2	96	88.168	ENSPNAG00000010956	xrn2	99	80.757	Pygocentrus_nattereri
ENSDARG00000101900	xrn2	96	78.203	ENSRNOG00000011785	Xrn2	100	70.359	Rattus_norvegicus
ENSDARG00000101900	xrn2	96	77.629	ENSRBIG00000036193	XRN2	100	76.570	Rhinopithecus_bieti
ENSDARG00000101900	xrn2	96	77.629	ENSRROG00000044400	XRN2	90	69.713	Rhinopithecus_roxellana
ENSDARG00000101900	xrn2	80	51.247	YOR048C	RAT1	64	53.382	Saccharomyces_cerevisiae
ENSDARG00000101900	xrn2	96	77.820	ENSSBOG00000021014	XRN2	100	69.815	Saimiri_boliviensis_boliviensis
ENSDARG00000101900	xrn2	96	87.954	ENSSFOG00015001091	xrn2	100	79.179	Scleropages_formosus
ENSDARG00000101900	xrn2	96	87.405	ENSSMAG00000007834	xrn2	100	77.300	Scophthalmus_maximus
ENSDARG00000101900	xrn2	96	85.333	ENSSDUG00000012802	xrn2	98	83.314	Seriola_dumerili
ENSDARG00000101900	xrn2	96	87.595	ENSSLDG00000021273	xrn2	97	84.783	Seriola_lalandi_dorsalis
ENSDARG00000101900	xrn2	54	92.000	ENSSARG00000005859	-	54	92.000	Sorex_araneus
ENSDARG00000101900	xrn2	96	79.350	ENSSPUG00000005485	XRN2	94	69.733	Sphenodon_punctatus
ENSDARG00000101900	xrn2	96	86.424	ENSSPAG00000016027	xrn2	99	78.093	Stegastes_partitus
ENSDARG00000101900	xrn2	96	78.435	ENSSSCG00000007109	XRN2	100	69.026	Sus_scrofa
ENSDARG00000101900	xrn2	96	78.394	ENSTGUG00000007535	XRN2	100	70.062	Taeniopygia_guttata
ENSDARG00000101900	xrn2	96	86.641	ENSTRUG00000015489	xrn2	100	75.794	Takifugu_rubripes
ENSDARG00000101900	xrn2	96	83.969	ENSTNIG00000010712	xrn2	100	74.414	Tetraodon_nigroviridis
ENSDARG00000101900	xrn2	96	78.011	ENSTBEG00000004119	XRN2	100	69.918	Tupaia_belangeri
ENSDARG00000101900	xrn2	96	77.672	ENSTTRG00000009087	XRN2	93	78.799	Tursiops_truncatus
ENSDARG00000101900	xrn2	96	78.203	ENSUAMG00000024634	XRN2	100	69.918	Ursus_americanus
ENSDARG00000101900	xrn2	92	77.465	ENSUMAG00000004012	XRN2	95	69.198	Ursus_maritimus
ENSDARG00000101900	xrn2	81	84.142	ENSVPAG00000010694	XRN2	84	84.142	Vicugna_pacos
ENSDARG00000101900	xrn2	96	78.203	ENSVVUG00000012178	XRN2	100	70.021	Vulpes_vulpes
ENSDARG00000101900	xrn2	96	79.771	ENSXETG00000023501	xrn2	100	72.170	Xenopus_tropicalis
ENSDARG00000101900	xrn2	96	85.277	ENSXMAG00000000242	xrn2	92	86.375	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004534	5'-3' exoribonuclease activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function