EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000102580 (Gene tree)
Gene ID: 100330257
Gene Symbol: CU571310.1
Alias: -
Full Name: ras-related protein Rab-39A-like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6465 bases
Position: chr17:5623514-5629978
Accession: 100330257
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130389	MMR_HSR1	PF01926.23	0.00014	1	1
ENSDARP00000143548	MMR_HSR1	PF01926.23	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000171220	CU571310.1-201	1666	XM_002665125	ENSDARP00000130389	212 (aa)	XP_002665171	E7F060
ENSDART00000176083	CU571310.1-202	1598	-	ENSDARP00000143548	212 (aa)	XP_021328725	E7F060

Gene Model

Click here to download ENSDARG00000102580's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000102580's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000102580	CU571310.1	78	32.143	ENSDARG00000021287	rab7b	81	32.143
ENSDARG00000102580	CU571310.1	80	40.000	ENSDARG00000041878	rab11ba	79	40.854
ENSDARG00000102580	CU571310.1	78	36.970	ENSDARG00000034522	rab6ba	79	36.257
ENSDARG00000102580	CU571310.1	85	42.222	ENSDARG00000098344	rab18b	85	42.222
ENSDARG00000102580	CU571310.1	84	36.872	ENSDARG00000056479	rab1bb	88	36.872
ENSDARG00000102580	CU571310.1	78	38.182	ENSDARG00000103714	rab6a	78	38.182
ENSDARG00000102580	CU571310.1	55	40.171	ENSDARG00000075285	si:ch73-116o1.2	79	36.310
ENSDARG00000102580	CU571310.1	77	43.293	ENSDARG00000055291	rab18a	79	43.293
ENSDARG00000102580	CU571310.1	58	36.885	ENSDARG00000036252	rras2	84	32.370
ENSDARG00000102580	CU571310.1	78	36.970	ENSDARG00000029885	rab41	77	36.970
ENSDARG00000102580	CU571310.1	77	35.583	ENSDARG00000102078	CABZ01072548.1	82	35.583
ENSDARG00000102580	CU571310.1	85	36.612	ENSDARG00000074246	rab14	84	36.612
ENSDARG00000102580	CU571310.1	96	32.020	ENSDARG00000018602	rab5aa	91	32.020
ENSDARG00000102580	CU571310.1	74	35.032	ENSDARG00000062865	mras	79	34.911
ENSDARG00000102580	CU571310.1	99	44.860	ENSDARG00000036501	rab39bb	100	44.860
ENSDARG00000102580	CU571310.1	81	38.953	ENSDARG00000103934	megf8	98	38.953
ENSDARG00000102580	CU571310.1	80	35.503	ENSDARG00000058425	rab35b	82	35.503
ENSDARG00000102580	CU571310.1	94	31.343	ENSDARG00000015807	rab22a	96	31.343
ENSDARG00000102580	CU571310.1	74	35.000	ENSDARG00000103391	rab9b	78	35.000
ENSDARG00000102580	CU571310.1	70	36.486	ENSDARG00000018107	rab3da	87	36.486
ENSDARG00000102580	CU571310.1	83	31.720	ENSDARG00000087243	zgc:100918	90	31.720
ENSDARG00000102580	CU571310.1	74	33.974	ENSDARG00000063321	rabl2	68	33.974
ENSDARG00000102580	CU571310.1	76	37.267	ENSDARG00000037967	si:dkey-16l2.16	82	45.455
ENSDARG00000102580	CU571310.1	85	37.017	ENSDARG00000037884	rab30	89	37.017
ENSDARG00000102580	CU571310.1	70	37.333	ENSDARG00000057394	rab33a	63	37.333
ENSDARG00000102580	CU571310.1	75	35.443	ENSDARG00000007257	rab5ab	72	35.443
ENSDARG00000102580	CU571310.1	84	38.547	ENSDARG00000029663	rab1ab	88	38.547
ENSDARG00000102580	CU571310.1	93	30.952	ENSDARG00000014058	rab36	78	30.952
ENSDARG00000102580	CU571310.1	99	47.664	ENSDARG00000034215	rab42a	100	47.664
ENSDARG00000102580	CU571310.1	99	35.945	ENSDARG00000033056	zgc:171927	100	35.945
ENSDARG00000102580	CU571310.1	70	37.333	ENSDARG00000003257	zgc:101559	64	37.333
ENSDARG00000102580	CU571310.1	58	33.607	ENSDARG00000006553	rras	63	33.607
ENSDARG00000102580	CU571310.1	57	33.058	ENSDARG00000010977	rab34b	51	33.588
ENSDARG00000102580	CU571310.1	90	36.649	ENSDARG00000020261	rab2a	89	36.649
ENSDARG00000102580	CU571310.1	85	37.705	ENSDARG00000035188	rab14l	84	37.705
ENSDARG00000102580	CU571310.1	81	37.791	ENSDARG00000034771	rab13	85	37.791
ENSDARG00000102580	CU571310.1	86	34.973	ENSDARG00000100379	si:dkey-34d22.2	98	34.973
ENSDARG00000102580	CU571310.1	99	43.458	ENSDARG00000019312	rab39ba	100	43.458
ENSDARG00000102580	CU571310.1	97	34.634	ENSDARG00000052954	rab25b	96	34.634
ENSDARG00000102580	CU571310.1	79	33.929	ENSDARG00000004151	rab23	73	34.270
ENSDARG00000102580	CU571310.1	77	37.805	ENSDARG00000114797	rab3b	74	37.805
ENSDARG00000102580	CU571310.1	72	32.680	ENSDARG00000052290	rab33ba	64	32.680
ENSDARG00000102580	CU571310.1	97	37.559	ENSDARG00000090086	rab11bb	95	37.559
ENSDARG00000102580	CU571310.1	78	33.333	ENSDARG00000020497	rab7a	80	33.333
ENSDARG00000102580	CU571310.1	78	36.970	ENSDARG00000031343	rab6bb	78	36.970
ENSDARG00000102580	CU571310.1	99	35.885	ENSDARG00000052263	rab1aa	100	35.885
ENSDARG00000102580	CU571310.1	98	32.692	ENSDARG00000058800	rab25a	97	32.692
ENSDARG00000102580	CU571310.1	98	37.089	ENSDARG00000014340	rab11al	97	37.089
ENSDARG00000102580	CU571310.1	86	39.011	ENSDARG00000041450	rab11a	83	39.011
ENSDARG00000102580	CU571310.1	99	35.545	ENSDARG00000058044	rab1ba	100	35.922
ENSDARG00000102580	CU571310.1	81	34.503	ENSDARG00000089428	rab12	72	34.503
ENSDARG00000102580	CU571310.1	84	34.831	ENSDARG00000026484	rab15	83	34.831

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000102580	CU571310.1	93	49.746	ENSAPOG00000009188	rab42a	100	46.119	Acanthochromis_polyacanthus
ENSDARG00000102580	CU571310.1	93	49.746	ENSACIG00000003102	rab42a	100	47.032	Amphilophus_citrinellus
ENSDARG00000102580	CU571310.1	93	49.746	ENSAOCG00000012921	rab42a	83	47.032	Amphiprion_ocellaris
ENSDARG00000102580	CU571310.1	93	49.746	ENSAPEG00000007713	rab42a	83	47.032	Amphiprion_percula
ENSDARG00000102580	CU571310.1	99	47.032	ENSATEG00000009052	rab42a	100	47.032	Anabas_testudineus
ENSDARG00000102580	CU571310.1	93	49.746	ENSACLG00000007514	rab42a	90	49.746	Astatotilapia_calliptera
ENSDARG00000102580	CU571310.1	99	47.664	ENSAMXG00000032729	rab42a	100	47.664	Astyanax_mexicanus
ENSDARG00000102580	CU571310.1	99	47.489	ENSCSEG00000010582	rab42a	100	47.489	Cynoglossus_semilaevis
ENSDARG00000102580	CU571310.1	99	45.622	ENSELUG00000010345	rab42a	100	45.622	Esox_lucius
ENSDARG00000102580	CU571310.1	99	46.575	ENSFHEG00000013106	rab42a	100	46.575	Fundulus_heteroclitus
ENSDARG00000102580	CU571310.1	93	49.239	ENSGAFG00000002141	rab42a	90	49.239	Gambusia_affinis
ENSDARG00000102580	CU571310.1	93	49.746	ENSHBUG00000015126	rab42a	74	49.746	Haplochromis_burtoni
ENSDARG00000102580	CU571310.1	99	47.664	ENSIPUG00000011376	rab42a	100	47.664	Ictalurus_punctatus
ENSDARG00000102580	CU571310.1	93	50.254	ENSKMAG00000007267	rab42a	90	50.254	Kryptolebias_marmoratus
ENSDARG00000102580	CU571310.1	93	49.239	ENSLBEG00000001193	rab42a	100	46.330	Labrus_bergylta
ENSDARG00000102580	CU571310.1	99	48.357	ENSLACG00000012755	-	100	48.357	Latimeria_chalumnae
ENSDARG00000102580	CU571310.1	93	51.777	ENSLOCG00000003453	rab42a	92	51.777	Lepisosteus_oculatus
ENSDARG00000102580	CU571310.1	100	63.679	ENSLOCG00000015825	-	99	63.679	Lepisosteus_oculatus
ENSDARG00000102580	CU571310.1	93	49.746	ENSMAMG00000002296	rab42a	90	49.746	Mastacembelus_armatus
ENSDARG00000102580	CU571310.1	93	49.746	ENSMZEG00005012460	rab42a	74	49.746	Maylandia_zebra
ENSDARG00000102580	CU571310.1	93	50.254	ENSMMOG00000014358	rab42a	90	50.254	Mola_mola
ENSDARG00000102580	CU571310.1	99	47.032	ENSNBRG00000021487	rab42a	82	47.032	Neolamprologus_brichardi
ENSDARG00000102580	CU571310.1	99	47.032	ENSORLG00000022335	rab42a	100	47.032	Oryzias_latipes
ENSDARG00000102580	CU571310.1	99	47.032	ENSORLG00020013895	rab42a	100	47.032	Oryzias_latipes_hni
ENSDARG00000102580	CU571310.1	99	47.032	ENSORLG00015004273	rab42a	100	47.032	Oryzias_latipes_hsok
ENSDARG00000102580	CU571310.1	99	47.032	ENSOMEG00000020418	rab42a	100	47.032	Oryzias_melastigma
ENSDARG00000102580	CU571310.1	99	48.131	ENSPKIG00000021215	-	100	48.131	Paramormyrops_kingsleyae
ENSDARG00000102580	CU571310.1	99	59.809	ENSPKIG00000015234	-	100	59.809	Paramormyrops_kingsleyae
ENSDARG00000102580	CU571310.1	99	47.867	ENSPMGG00000024112	rab42a	96	47.867	Periophthalmus_magnuspinnatus
ENSDARG00000102580	CU571310.1	93	49.239	ENSPFOG00000004838	rab42a	74	49.239	Poecilia_formosa
ENSDARG00000102580	CU571310.1	93	49.239	ENSPLAG00000005628	rab42a	90	49.239	Poecilia_latipinna
ENSDARG00000102580	CU571310.1	93	49.239	ENSPMEG00000019497	rab42a	90	49.239	Poecilia_mexicana
ENSDARG00000102580	CU571310.1	93	49.239	ENSPREG00000013962	rab42a	90	49.239	Poecilia_reticulata
ENSDARG00000102580	CU571310.1	93	49.746	ENSPNYG00000010325	rab42a	74	49.746	Pundamilia_nyererei
ENSDARG00000102580	CU571310.1	99	48.131	ENSPNAG00000016567	rab42a	100	48.131	Pygocentrus_nattereri
ENSDARG00000102580	CU571310.1	99	49.533	ENSSFOG00015020732	rab42a	100	49.533	Scleropages_formosus
ENSDARG00000102580	CU571310.1	100	67.925	ENSSFOG00015016000	-	98	67.925	Scleropages_formosus
ENSDARG00000102580	CU571310.1	99	46.119	ENSSMAG00000020311	rab42a	100	46.119	Scophthalmus_maximus
ENSDARG00000102580	CU571310.1	99	47.032	ENSSDUG00000011851	rab42a	100	47.032	Seriola_dumerili
ENSDARG00000102580	CU571310.1	99	47.032	ENSSLDG00000020354	rab42a	100	47.032	Seriola_lalandi_dorsalis
ENSDARG00000102580	CU571310.1	93	49.746	ENSSPAG00000016167	rab42a	100	47.032	Stegastes_partitus
ENSDARG00000102580	CU571310.1	99	47.032	ENSTRUG00000010224	rab42a	100	47.032	Takifugu_rubripes
ENSDARG00000102580	CU571310.1	93	49.239	ENSXCOG00000003428	rab42a	90	49.239	Xiphophorus_couchianus
ENSDARG00000102580	CU571310.1	93	49.239	ENSXMAG00000028376	rab42a	90	49.239	Xiphophorus_maculatus