EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000102634 (Gene tree)
Gene ID: 791461
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9865 bases
Position: chr1:59314675-59324539
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000133177	R3H	PF01424.22	1.1e-05	1	1
ENSDARP00000139131	R3H	PF01424.22	1.1e-05	1	1
ENSDARP00000133177	RNA_bind	PF08675.11	2.4e-33	1	1
ENSDARP00000139131	RNA_bind	PF08675.11	2.5e-33	1	1
ENSDARP00000133177	CAF1	PF04857.20	7.6e-90	1	1
ENSDARP00000139131	CAF1	PF04857.20	8.1e-90	1	1
ENSDARP00000140690	CAF1	PF04857.20	5.8e-39	1	1
ENSDARP00000137321	CAF1	PF04857.20	6.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000161981	-	751	-	ENSDARP00000139642	95 (aa)	-	A0A0R4IX97
ENSDART00000167095	-	770	-	-	- (aa)	-	-
ENSDART00000160658	-	2470	-	ENSDARP00000133177	647 (aa)	-	A0A0R4IHL6
ENSDART00000161872	-	2509	-	ENSDARP00000139131	660 (aa)	-	A0A0R4IW61
ENSDART00000169792	-	525	-	ENSDARP00000137321	91 (aa)	-	A0A0R4IPV8
ENSDART00000160735	-	585	-	ENSDARP00000140690	193 (aa)	-	A0A0R4IYB9

Gene Model

Click here to download ENSDARG00000102634's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000102634's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000102634	parn	100	64.438	ENSG00000140694	PARN	100	71.186	Homo_sapiens
ENSDARG00000102634	parn	77	75.714	ENSAPOG00000019730	-	100	66.818	Acanthochromis_polyacanthus
ENSDARG00000102634	parn	88	69.948	ENSAMEG00000011208	PARN	98	66.242	Ailuropoda_melanoleuca
ENSDARG00000102634	parn	100	66.667	ENSACIG00000000619	parn	94	67.105	Amphilophus_citrinellus
ENSDARG00000102634	parn	100	66.763	ENSAOCG00000003465	parn	100	66.810	Amphiprion_ocellaris
ENSDARG00000102634	parn	75	76.531	ENSAPEG00000010661	parn	93	76.531	Amphiprion_percula
ENSDARG00000102634	parn	100	66.522	ENSATEG00000004661	parn	100	67.052	Anabas_testudineus
ENSDARG00000102634	parn	97	61.111	ENSAPLG00000013914	PARN	89	70.928	Anas_platyrhynchos
ENSDARG00000102634	parn	100	74.545	ENSACAG00000004973	PARN	100	63.459	Anolis_carolinensis
ENSDARG00000102634	parn	100	64.286	ENSANAG00000031516	PARN	100	71.186	Aotus_nancymaae
ENSDARG00000102634	parn	100	67.249	ENSACLG00000004742	parn	100	67.394	Astatotilapia_calliptera
ENSDARG00000102634	parn	100	73.485	ENSAMXG00000012390	parn	100	73.636	Astyanax_mexicanus
ENSDARG00000102634	parn	100	71.910	ENSBTAG00000018097	PARN	90	69.847	Bos_taurus
ENSDARG00000102634	parn	100	64.438	ENSCJAG00000015866	PARN	100	71.186	Callithrix_jacchus
ENSDARG00000102634	parn	100	63.526	ENSCAFG00000018795	PARN	100	63.581	Canis_familiaris
ENSDARG00000102634	parn	100	70.909	ENSCAFG00020024126	PARN	100	63.429	Canis_lupus_dingo
ENSDARG00000102634	parn	100	59.259	ENSCHIG00000018143	PARN	90	70.364	Capra_hircus
ENSDARG00000102634	parn	77	44.371	ENSCAPG00000007984	PARN	78	48.025	Cavia_aperea
ENSDARG00000102634	parn	100	59.259	ENSCPOG00000002263	PARN	100	63.623	Cavia_porcellus
ENSDARG00000102634	parn	100	59.259	ENSCCAG00000030367	PARN	100	71.186	Cebus_capucinus
ENSDARG00000102634	parn	100	58.333	ENSCATG00000041368	PARN	95	74.624	Cercocebus_atys
ENSDARG00000102634	parn	80	38.356	ENSCATG00000033196	PNLDC1	72	35.862	Cercocebus_atys
ENSDARG00000102634	parn	98	71.910	ENSCLAG00000015406	PARN	98	66.088	Chinchilla_lanigera
ENSDARG00000102634	parn	100	59.259	ENSCSAG00000008142	PARN	100	64.286	Chlorocebus_sabaeus
ENSDARG00000102634	parn	94	59.615	ENSCHOG00000007014	PARN	83	56.818	Choloepus_hoffmanni
ENSDARG00000102634	parn	73	75.212	ENSCPBG00000006609	PARN	82	75.212	Chrysemys_picta_bellii
ENSDARG00000102634	parn	80	52.273	ENSCING00000010142	-	99	42.026	Ciona_intestinalis
ENSDARG00000102634	parn	100	59.259	ENSCANG00000028849	-	100	71.186	Colobus_angolensis_palliatus
ENSDARG00000102634	parn	77	74.286	ENSCANG00000023734	-	100	60.633	Colobus_angolensis_palliatus
ENSDARG00000102634	parn	100	58.333	ENSCGRG00001012096	Parn	100	63.914	Cricetulus_griseus_chok1gshd
ENSDARG00000102634	parn	100	58.333	ENSCGRG00000004939	Parn	100	63.914	Cricetulus_griseus_crigri
ENSDARG00000102634	parn	100	64.986	ENSCSEG00000002064	parn	100	64.545	Cynoglossus_semilaevis
ENSDARG00000102634	parn	100	67.681	ENSCVAG00000014848	parn	100	67.681	Cyprinodon_variegatus
ENSDARG00000102634	parn	100	59.259	ENSDNOG00000000833	PARN	94	74.345	Dasypus_novemcinctus
ENSDARG00000102634	parn	80	35.616	ENSDNOG00000013709	PNLDC1	67	35.172	Dasypus_novemcinctus
ENSDARG00000102634	parn	77	71.429	ENSDORG00000027812	-	100	62.443	Dipodomys_ordii
ENSDARG00000102634	parn	81	78.431	ENSETEG00000014828	-	67	71.486	Echinops_telfairi
ENSDARG00000102634	parn	92	68.317	ENSEASG00005011400	PARN	100	64.545	Equus_asinus_asinus
ENSDARG00000102634	parn	80	34.247	ENSECAG00000012898	PNLDC1	70	33.793	Equus_caballus
ENSDARG00000102634	parn	92	68.152	ENSECAG00000017792	PARN	100	64.394	Equus_caballus
ENSDARG00000102634	parn	77	69.444	ENSEEUG00000010370	PARN	60	74.336	Erinaceus_europaeus
ENSDARG00000102634	parn	100	68.795	ENSELUG00000013139	parn	90	68.650	Esox_lucius
ENSDARG00000102634	parn	100	59.259	ENSFCAG00000044961	PARN	100	63.174	Felis_catus
ENSDARG00000102634	parn	96	59.259	ENSFALG00000003911	PARN	82	73.764	Ficedula_albicollis
ENSDARG00000102634	parn	100	60.204	ENSFDAG00000009234	PARN	100	63.086	Fukomys_damarensis
ENSDARG00000102634	parn	94	68.817	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSDARG00000102634	parn	100	65.741	ENSGMOG00000003231	parn	99	74.545	Gadus_morhua
ENSDARG00000102634	parn	100	60.185	ENSGALG00000003091	PARN	91	69.671	Gallus_gallus
ENSDARG00000102634	parn	100	66.667	ENSGAFG00000011061	parn	100	65.612	Gambusia_affinis
ENSDARG00000102634	parn	100	66.667	ENSGACG00000019501	parn	100	67.638	Gasterosteus_aculeatus
ENSDARG00000102634	parn	100	58.333	ENSGGOG00000025224	PARN	93	70.833	Gorilla_gorilla
ENSDARG00000102634	parn	100	67.054	ENSHBUG00000017906	parn	100	67.199	Haplochromis_burtoni
ENSDARG00000102634	parn	100	63.359	ENSHGLG00000010886	PARN	100	63.664	Heterocephalus_glaber_female
ENSDARG00000102634	parn	100	63.359	ENSHGLG00100014659	PARN	100	63.664	Heterocephalus_glaber_male
ENSDARG00000102634	parn	87	69.056	ENSHCOG00000008683	parn	98	69.056	Hippocampus_comes
ENSDARG00000102634	parn	100	66.667	ENSIPUG00000012401	parn	100	64.759	Ictalurus_punctatus
ENSDARG00000102634	parn	100	62.879	ENSSTOG00000007519	PARN	100	63.182	Ictidomys_tridecemlineatus
ENSDARG00000102634	parn	100	60.185	ENSJJAG00000023049	Parn	100	63.231	Jaculus_jaculus
ENSDARG00000102634	parn	100	65.945	ENSKMAG00000009462	parn	100	65.945	Kryptolebias_marmoratus
ENSDARG00000102634	parn	96	69.749	ENSLBEG00000009167	parn	99	69.749	Labrus_bergylta
ENSDARG00000102634	parn	100	60.185	ENSLACG00000004207	PARN	100	66.667	Latimeria_chalumnae
ENSDARG00000102634	parn	100	74.545	ENSLOCG00000000715	parn	100	64.740	Lepisosteus_oculatus
ENSDARG00000102634	parn	92	67.381	ENSLAFG00000015036	PARN	94	67.381	Loxodonta_africana
ENSDARG00000102634	parn	87	68.458	ENSMFAG00000044852	PARN	100	71.186	Macaca_fascicularis
ENSDARG00000102634	parn	100	59.259	ENSMMUG00000018849	PARN	100	71.186	Macaca_mulatta
ENSDARG00000102634	parn	100	59.259	ENSMNEG00000045108	PARN	100	71.186	Macaca_nemestrina
ENSDARG00000102634	parn	100	58.333	ENSMLEG00000031743	PARN	100	71.186	Mandrillus_leucophaeus
ENSDARG00000102634	parn	100	67.677	ENSMAMG00000006939	parn	100	67.677	Mastacembelus_armatus
ENSDARG00000102634	parn	100	67.103	ENSMZEG00005013590	parn	100	67.249	Maylandia_zebra
ENSDARG00000102634	parn	87	68.229	ENSMGAG00000001004	PARN	90	68.229	Meleagris_gallopavo
ENSDARG00000102634	parn	77	33.333	ENSMAUG00000012298	Pnldc1	68	32.877	Mesocricetus_auratus
ENSDARG00000102634	parn	96	62.105	ENSMAUG00000008025	Parn	89	65.858	Mesocricetus_auratus
ENSDARG00000102634	parn	100	58.333	ENSMICG00000016053	PARN	100	69.492	Microcebus_murinus
ENSDARG00000102634	parn	100	59.259	ENSMOCG00000022211	Parn	100	74.037	Microtus_ochrogaster
ENSDARG00000102634	parn	100	62.963	ENSMMOG00000011333	parn	89	74.000	Mola_mola
ENSDARG00000102634	parn	100	62.037	ENSMODG00000004915	PARN	99	75.806	Monodelphis_domestica
ENSDARG00000102634	parn	100	62.963	ENSMALG00000019426	parn	94	75.000	Monopterus_albus
ENSDARG00000102634	parn	100	60.185	MGP_CAROLIEiJ_G0020466	Parn	100	62.712	Mus_caroli
ENSDARG00000102634	parn	77	34.286	ENSMUSG00000073460	Pnldc1	66	34.307	Mus_musculus
ENSDARG00000102634	parn	100	60.185	ENSMUSG00000022685	Parn	99	66.667	Mus_musculus
ENSDARG00000102634	parn	100	60.185	MGP_PahariEiJ_G0016172	Parn	84	72.420	Mus_pahari
ENSDARG00000102634	parn	100	60.185	MGP_SPRETEiJ_G0021361	Parn	100	62.577	Mus_spretus
ENSDARG00000102634	parn	100	58.333	ENSMPUG00000014464	PARN	100	64.438	Mustela_putorius_furo
ENSDARG00000102634	parn	100	61.111	ENSMLUG00000005414	PARN	100	75.152	Myotis_lucifugus
ENSDARG00000102634	parn	77	72.857	ENSNGAG00000024082	-	100	63.636	Nannospalax_galili
ENSDARG00000102634	parn	100	61.321	ENSNBRG00000006805	parn	93	74.000	Neolamprologus_brichardi
ENSDARG00000102634	parn	100	64.590	ENSNLEG00000010241	PARN	100	71.186	Nomascus_leucogenys
ENSDARG00000102634	parn	79	72.973	ENSMEUG00000008178	-	75	59.026	Notamacropus_eugenii
ENSDARG00000102634	parn	96	57.143	ENSOPRG00000012187	PARN	89	65.957	Ochotona_princeps
ENSDARG00000102634	parn	87	65.317	ENSODEG00000001617	PARN	89	65.317	Octodon_degus
ENSDARG00000102634	parn	100	67.344	ENSONIG00000000151	parn	100	67.634	Oreochromis_niloticus
ENSDARG00000102634	parn	86	70.599	ENSOCUG00000000322	PARN	99	63.623	Oryctolagus_cuniculus
ENSDARG00000102634	parn	77	80.000	ENSORLG00000024893	-	100	65.297	Oryzias_latipes
ENSDARG00000102634	parn	100	79.091	ENSORLG00020010313	parn	100	67.257	Oryzias_latipes_hni
ENSDARG00000102634	parn	100	79.091	ENSORLG00015000300	parn	100	67.257	Oryzias_latipes_hsok
ENSDARG00000102634	parn	100	80.000	ENSOMEG00000019555	parn	100	66.226	Oryzias_melastigma
ENSDARG00000102634	parn	100	57.407	ENSOGAG00000014626	PARN	100	73.333	Otolemur_garnettii
ENSDARG00000102634	parn	100	59.259	ENSOARG00000007574	PARN	100	75.758	Ovis_aries
ENSDARG00000102634	parn	100	64.286	ENSPPAG00000031438	PARN	100	71.186	Pan_paniscus
ENSDARG00000102634	parn	100	59.259	ENSPPRG00000018583	PARN	100	63.174	Panthera_pardus
ENSDARG00000102634	parn	100	59.259	ENSPTIG00000012135	PARN	100	63.174	Panthera_tigris_altaica
ENSDARG00000102634	parn	100	64.286	ENSPTRG00000007792	PARN	100	71.186	Pan_troglodytes
ENSDARG00000102634	parn	100	59.259	ENSPANG00000020099	PARN	100	71.186	Papio_anubis
ENSDARG00000102634	parn	100	76.364	ENSPKIG00000022807	parn	96	64.419	Paramormyrops_kingsleyae
ENSDARG00000102634	parn	100	63.889	ENSPSIG00000014804	PARN	90	70.761	Pelodiscus_sinensis
ENSDARG00000102634	parn	91	69.522	ENSPMGG00000014431	parn	83	69.587	Periophthalmus_magnuspinnatus
ENSDARG00000102634	parn	100	73.034	ENSPEMG00000018439	Parn	100	61.574	Peromyscus_maniculatus_bairdii
ENSDARG00000102634	parn	100	52.532	ENSPMAG00000003956	parn	98	67.308	Petromyzon_marinus
ENSDARG00000102634	parn	98	63.158	ENSPCIG00000001259	PARN	91	69.492	Phascolarctos_cinereus
ENSDARG00000102634	parn	100	67.593	ENSPFOG00000012823	parn	100	66.427	Poecilia_formosa
ENSDARG00000102634	parn	100	67.593	ENSPLAG00000006395	parn	100	66.427	Poecilia_latipinna
ENSDARG00000102634	parn	100	67.593	ENSPMEG00000007711	parn	100	66.378	Poecilia_mexicana
ENSDARG00000102634	parn	100	66.667	ENSPREG00000000147	parn	100	65.994	Poecilia_reticulata
ENSDARG00000102634	parn	100	63.939	ENSPPYG00000007123	PARN	100	63.939	Pongo_abelii
ENSDARG00000102634	parn	87	59.266	ENSPCAG00000001741	PARN	100	56.000	Procavia_capensis
ENSDARG00000102634	parn	100	58.333	ENSPCOG00000019292	PARN	100	69.492	Propithecus_coquereli
ENSDARG00000102634	parn	96	58.879	ENSPVAG00000002547	PARN	90	66.784	Pteropus_vampyrus
ENSDARG00000102634	parn	100	67.347	ENSPNYG00000006835	parn	100	67.493	Pundamilia_nyererei
ENSDARG00000102634	parn	93	74.309	ENSPNAG00000018905	parn	100	74.309	Pygocentrus_nattereri
ENSDARG00000102634	parn	100	63.238	ENSRNOG00000002912	Parn	98	73.737	Rattus_norvegicus
ENSDARG00000102634	parn	67	70.492	ENSRROG00000020116	-	86	70.492	Rhinopithecus_roxellana
ENSDARG00000102634	parn	100	63.070	ENSSBOG00000034726	PARN	100	71.186	Saimiri_boliviensis_boliviensis
ENSDARG00000102634	parn	97	62.037	ENSSHAG00000008493	PARN	93	73.381	Sarcophilus_harrisii
ENSDARG00000102634	parn	100	75.455	ENSSFOG00015014165	parn	98	68.614	Scleropages_formosus
ENSDARG00000102634	parn	96	69.702	ENSSMAG00000000685	parn	90	71.326	Scophthalmus_maximus
ENSDARG00000102634	parn	100	67.532	ENSSDUG00000014555	parn	100	67.677	Seriola_dumerili
ENSDARG00000102634	parn	77	75.714	ENSSLDG00000007603	-	100	63.014	Seriola_lalandi_dorsalis
ENSDARG00000102634	parn	67	75.576	ENSSARG00000014339	PARN	75	75.576	Sorex_araneus
ENSDARG00000102634	parn	100	63.429	ENSSPUG00000007719	PARN	100	63.885	Sphenodon_punctatus
ENSDARG00000102634	parn	100	67.294	ENSSPAG00000007095	parn	100	67.052	Stegastes_partitus
ENSDARG00000102634	parn	100	60.185	ENSSSCG00000007878	PARN	89	64.188	Sus_scrofa
ENSDARG00000102634	parn	97	59.259	ENSTGUG00000004971	PARN	96	66.395	Taeniopygia_guttata
ENSDARG00000102634	parn	94	76.374	ENSTRUG00000015208	-	99	76.374	Takifugu_rubripes
ENSDARG00000102634	parn	100	67.732	ENSTNIG00000008252	parn	100	67.884	Tetraodon_nigroviridis
ENSDARG00000102634	parn	73	61.814	ENSTBEG00000010407	PARN	100	53.936	Tupaia_belangeri
ENSDARG00000102634	parn	96	59.259	ENSTTRG00000002843	PARN	90	67.135	Tursiops_truncatus
ENSDARG00000102634	parn	75	63.395	ENSUAMG00000008283	PARN	100	63.395	Ursus_americanus
ENSDARG00000102634	parn	100	58.333	ENSUMAG00000004527	PARN	98	66.667	Ursus_maritimus
ENSDARG00000102634	parn	96	60.185	ENSVPAG00000008968	PARN	93	67.838	Vicugna_pacos
ENSDARG00000102634	parn	100	63.678	ENSVVUG00000019509	PARN	100	63.733	Vulpes_vulpes
ENSDARG00000102634	parn	100	71.818	ENSXETG00000010994	parn	100	72.000	Xenopus_tropicalis
ENSDARG00000102634	parn	96	64.000	ENSXCOG00000015990	parn	99	68.159	Xiphophorus_couchianus
ENSDARG00000102634	parn	100	66.667	ENSXMAG00000014783	parn	100	66.185	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004527	exonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	21873635.	IBA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006402	mRNA catabolic process	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030097	hemopoiesis	26342108.	IMP	Process
GO:0043169	cation binding	-	ISS	Function
GO:0046872	metal ion binding	-	IEA	Function