EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000102846 (Gene tree)
Gene ID: 541496
Gene Symbol: trmt13
Alias: ccdc76|fe24e02|wu:fe24e02|zgc:110839
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6147 bases
Position: chr22:16311740-16317886
Accession: ZDB-GENE-050327-19
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130467	TRM13	PF05206.14	1.6e-91	1	1
ENSDARP00000130467	zf-U11-48K	PF05253.12	1.5e-09	1	1
ENSDARP00000130467	zf-TRM13_CCCH	PF11722.8	1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165997	-	451	-	-	- (aa)	-	-
ENSDART00000163664	-	1903	-	ENSDARP00000130467	462 (aa)	-	A0A0R4ID18

Gene Model

Click here to download ENSDARG00000102846's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000102846's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000102846	trmt13	96	57.974	ENSG00000122435	TRMT13	95	57.974	Homo_sapiens
ENSDARG00000102846	trmt13	97	53.909	ENSAPOG00000015131	trmt13	99	54.321	Acanthochromis_polyacanthus
ENSDARG00000102846	trmt13	96	57.543	ENSAMEG00000008917	TRMT13	95	57.543	Ailuropoda_melanoleuca
ENSDARG00000102846	trmt13	98	55.603	ENSACIG00000005804	trmt13	95	54.605	Amphilophus_citrinellus
ENSDARG00000102846	trmt13	97	53.799	ENSAOCG00000023585	trmt13	99	53.799	Amphiprion_ocellaris
ENSDARG00000102846	trmt13	97	53.593	ENSAPEG00000004025	trmt13	99	53.593	Amphiprion_percula
ENSDARG00000102846	trmt13	96	57.330	ENSATEG00000006597	trmt13	96	57.330	Anabas_testudineus
ENSDARG00000102846	trmt13	88	59.529	ENSAPLG00000014924	TRMT13	99	59.529	Anas_platyrhynchos
ENSDARG00000102846	trmt13	98	53.846	ENSACAG00000003498	TRMT13	99	53.846	Anolis_carolinensis
ENSDARG00000102846	trmt13	96	57.328	ENSANAG00000019525	TRMT13	95	57.328	Aotus_nancymaae
ENSDARG00000102846	trmt13	97	57.582	ENSACLG00000020018	trmt13	99	57.582	Astatotilapia_calliptera
ENSDARG00000102846	trmt13	98	68.487	ENSAMXG00000017963	trmt13	100	68.908	Astyanax_mexicanus
ENSDARG00000102846	trmt13	96	56.681	ENSBTAG00000015781	TRMT13	95	56.681	Bos_taurus
ENSDARG00000102846	trmt13	96	56.897	ENSCJAG00000000200	TRMT13	89	72.519	Callithrix_jacchus
ENSDARG00000102846	trmt13	63	56.592	ENSCAFG00000020021	TRMT13	96	56.592	Canis_familiaris
ENSDARG00000102846	trmt13	56	63.707	ENSCAFG00020011572	TRMT13	90	63.707	Canis_lupus_dingo
ENSDARG00000102846	trmt13	97	57.082	ENSCHIG00000015395	TRMT13	96	57.082	Capra_hircus
ENSDARG00000102846	trmt13	97	55.699	ENSTSYG00000010811	TRMT13	97	56.129	Carlito_syrichta
ENSDARG00000102846	trmt13	73	44.729	ENSCAPG00000009085	TRMT13	95	46.724	Cavia_aperea
ENSDARG00000102846	trmt13	96	57.701	ENSCPOG00000000694	TRMT13	95	57.701	Cavia_porcellus
ENSDARG00000102846	trmt13	96	57.328	ENSCCAG00000023772	TRMT13	95	57.328	Cebus_capucinus
ENSDARG00000102846	trmt13	96	57.974	ENSCATG00000033556	TRMT13	95	57.974	Cercocebus_atys
ENSDARG00000102846	trmt13	88	56.386	ENSCLAG00000008220	TRMT13	98	56.595	Chinchilla_lanigera
ENSDARG00000102846	trmt13	96	57.974	ENSCSAG00000001506	TRMT13	95	57.974	Chlorocebus_sabaeus
ENSDARG00000102846	trmt13	96	59.170	ENSCPBG00000026671	TRMT13	95	59.170	Chrysemys_picta_bellii
ENSDARG00000102846	trmt13	96	57.974	ENSCANG00000034659	TRMT13	95	57.974	Colobus_angolensis_palliatus
ENSDARG00000102846	trmt13	98	54.088	ENSCGRG00001021601	Trmt13	98	54.088	Cricetulus_griseus_chok1gshd
ENSDARG00000102846	trmt13	51	49.407	ENSCGRG00000000093	-	96	49.407	Cricetulus_griseus_crigri
ENSDARG00000102846	trmt13	98	54.967	ENSCSEG00000000591	trmt13	99	54.967	Cynoglossus_semilaevis
ENSDARG00000102846	trmt13	98	54.468	ENSCVAG00000017342	trmt13	95	55.297	Cyprinodon_variegatus
ENSDARG00000102846	trmt13	58	60.145	ENSDNOG00000001710	TRMT13	84	60.145	Dasypus_novemcinctus
ENSDARG00000102846	trmt13	96	56.494	ENSDORG00000015808	Trmt13	95	56.494	Dipodomys_ordii
ENSDARG00000102846	trmt13	98	35.244	FBgn0037435	CG18048	96	35.244	Drosophila_melanogaster
ENSDARG00000102846	trmt13	96	50.749	ENSETEG00000005819	TRMT13	96	50.749	Echinops_telfairi
ENSDARG00000102846	trmt13	95	47.007	ENSEBUG00000014444	trmt13	96	47.007	Eptatretus_burgeri
ENSDARG00000102846	trmt13	96	56.371	ENSEASG00005015918	TRMT13	95	56.371	Equus_asinus_asinus
ENSDARG00000102846	trmt13	96	56.371	ENSECAG00000022626	TRMT13	95	56.371	Equus_caballus
ENSDARG00000102846	trmt13	73	57.407	ENSEEUG00000000294	TRMT13	72	57.407	Erinaceus_europaeus
ENSDARG00000102846	trmt13	98	65.310	ENSELUG00000003803	trmt13	99	65.525	Esox_lucius
ENSDARG00000102846	trmt13	96	57.543	ENSFCAG00000030618	TRMT13	95	57.543	Felis_catus
ENSDARG00000102846	trmt13	97	59.219	ENSFALG00000002424	TRMT13	96	59.219	Ficedula_albicollis
ENSDARG00000102846	trmt13	96	57.204	ENSFDAG00000006342	TRMT13	95	57.204	Fukomys_damarensis
ENSDARG00000102846	trmt13	80	57.368	ENSFHEG00000022954	trmt13	98	56.642	Fundulus_heteroclitus
ENSDARG00000102846	trmt13	95	54.422	ENSGMOG00000013223	trmt13	100	54.649	Gadus_morhua
ENSDARG00000102846	trmt13	95	58.590	ENSGALG00000005290	TRMT13	97	58.584	Gallus_gallus
ENSDARG00000102846	trmt13	78	56.065	ENSGAFG00000001577	trmt13	81	56.065	Gambusia_affinis
ENSDARG00000102846	trmt13	97	55.217	ENSGACG00000013428	trmt13	98	56.087	Gasterosteus_aculeatus
ENSDARG00000102846	trmt13	96	59.259	ENSGAGG00000023303	TRMT13	95	67.176	Gopherus_agassizii
ENSDARG00000102846	trmt13	96	57.974	ENSGGOG00000005616	TRMT13	95	57.974	Gorilla_gorilla
ENSDARG00000102846	trmt13	97	57.675	ENSHBUG00000007754	trmt13	99	57.675	Haplochromis_burtoni
ENSDARG00000102846	trmt13	96	56.989	ENSHGLG00000002164	TRMT13	95	56.989	Heterocephalus_glaber_female
ENSDARG00000102846	trmt13	96	56.989	ENSHGLG00100001618	TRMT13	95	56.989	Heterocephalus_glaber_male
ENSDARG00000102846	trmt13	95	51.121	ENSHCOG00000020553	trmt13	96	51.121	Hippocampus_comes
ENSDARG00000102846	trmt13	98	68.898	ENSIPUG00000024787	trmt13	99	69.546	Ictalurus_punctatus
ENSDARG00000102846	trmt13	96	56.897	ENSSTOG00000013483	TRMT13	96	56.897	Ictidomys_tridecemlineatus
ENSDARG00000102846	trmt13	98	56.448	ENSJJAG00000018012	Trmt13	98	56.448	Jaculus_jaculus
ENSDARG00000102846	trmt13	63	55.782	ENSKMAG00000007639	trmt13	92	55.782	Kryptolebias_marmoratus
ENSDARG00000102846	trmt13	97	53.548	ENSLBEG00000020238	trmt13	99	53.978	Labrus_bergylta
ENSDARG00000102846	trmt13	97	60.129	ENSLACG00000013153	TRMT13	98	60.129	Latimeria_chalumnae
ENSDARG00000102846	trmt13	99	62.179	ENSLOCG00000000418	trmt13	99	62.766	Lepisosteus_oculatus
ENSDARG00000102846	trmt13	76	55.827	ENSLAFG00000002383	TRMT13	98	55.827	Loxodonta_africana
ENSDARG00000102846	trmt13	96	57.634	ENSMFAG00000034681	TRMT13	95	57.634	Macaca_fascicularis
ENSDARG00000102846	trmt13	96	57.634	ENSMMUG00000004243	TRMT13	95	57.634	Macaca_mulatta
ENSDARG00000102846	trmt13	96	57.634	ENSMNEG00000036102	TRMT13	95	57.634	Macaca_nemestrina
ENSDARG00000102846	trmt13	96	58.190	ENSMLEG00000034258	TRMT13	95	58.190	Mandrillus_leucophaeus
ENSDARG00000102846	trmt13	97	57.356	ENSMAMG00000016597	trmt13	97	57.356	Mastacembelus_armatus
ENSDARG00000102846	trmt13	97	57.363	ENSMZEG00005020959	trmt13	99	57.363	Maylandia_zebra
ENSDARG00000102846	trmt13	88	59.716	ENSMGAG00000006970	TRMT13	99	59.716	Meleagris_gallopavo
ENSDARG00000102846	trmt13	98	55.297	ENSMAUG00000010448	Trmt13	97	55.297	Mesocricetus_auratus
ENSDARG00000102846	trmt13	96	57.667	ENSMICG00000005283	TRMT13	95	57.667	Microcebus_murinus
ENSDARG00000102846	trmt13	97	56.710	ENSMOCG00000019914	Trmt13	96	56.710	Microtus_ochrogaster
ENSDARG00000102846	trmt13	56	52.830	ENSMMOG00000007762	trmt13	90	52.830	Mola_mola
ENSDARG00000102846	trmt13	98	56.170	ENSMODG00000003646	TRMT13	97	56.170	Monodelphis_domestica
ENSDARG00000102846	trmt13	98	54.783	ENSMALG00000020965	trmt13	98	54.783	Monopterus_albus
ENSDARG00000102846	trmt13	98	57.203	MGP_CAROLIEiJ_G0025568	Trmt13	98	57.203	Mus_caroli
ENSDARG00000102846	trmt13	98	56.568	ENSMUSG00000033439	Trmt13	98	56.568	Mus_musculus
ENSDARG00000102846	trmt13	98	56.871	MGP_PahariEiJ_G0027014	Trmt13	76	79.167	Mus_pahari
ENSDARG00000102846	trmt13	98	56.780	MGP_SPRETEiJ_G0026518	Trmt13	98	56.780	Mus_spretus
ENSDARG00000102846	trmt13	76	56.983	ENSMPUG00000002078	-	95	56.983	Mustela_putorius_furo
ENSDARG00000102846	trmt13	96	56.182	ENSMLUG00000002124	TRMT13	95	56.182	Myotis_lucifugus
ENSDARG00000102846	trmt13	98	53.796	ENSNBRG00000006783	trmt13	98	53.796	Neolamprologus_brichardi
ENSDARG00000102846	trmt13	96	57.543	ENSNLEG00000035917	TRMT13	95	57.543	Nomascus_leucogenys
ENSDARG00000102846	trmt13	51	55.000	ENSMEUG00000013346	-	97	55.000	Notamacropus_eugenii
ENSDARG00000102846	trmt13	66	62.500	ENSOPRG00000012048	TRMT13	65	62.500	Ochotona_princeps
ENSDARG00000102846	trmt13	97	57.456	ENSONIG00000004574	trmt13	99	57.456	Oreochromis_niloticus
ENSDARG00000102846	trmt13	89	58.353	ENSOANG00000012057	TRMT13	97	58.353	Ornithorhynchus_anatinus
ENSDARG00000102846	trmt13	96	57.082	ENSOCUG00000023095	TRMT13	95	57.082	Oryctolagus_cuniculus
ENSDARG00000102846	trmt13	97	53.030	ENSORLG00000003320	trmt13	98	53.247	Oryzias_latipes
ENSDARG00000102846	trmt13	96	54.386	ENSORLG00020005972	trmt13	97	54.386	Oryzias_latipes_hni
ENSDARG00000102846	trmt13	97	57.205	ENSORLG00015002270	trmt13	98	57.205	Oryzias_latipes_hsok
ENSDARG00000102846	trmt13	97	56.236	ENSOMEG00000006724	trmt13	94	56.893	Oryzias_melastigma
ENSDARG00000102846	trmt13	97	57.511	ENSOGAG00000005618	TRMT13	93	57.511	Otolemur_garnettii
ENSDARG00000102846	trmt13	97	57.082	ENSOARG00000017983	TRMT13	96	57.082	Ovis_aries
ENSDARG00000102846	trmt13	96	57.759	ENSPPAG00000043736	TRMT13	95	57.759	Pan_paniscus
ENSDARG00000102846	trmt13	96	57.543	ENSPPRG00000003424	TRMT13	95	57.543	Panthera_pardus
ENSDARG00000102846	trmt13	96	57.543	ENSPTIG00000018598	TRMT13	95	57.543	Panthera_tigris_altaica
ENSDARG00000102846	trmt13	96	57.759	ENSPTRG00000001001	TRMT13	95	57.759	Pan_troglodytes
ENSDARG00000102846	trmt13	96	57.974	ENSPANG00000007598	TRMT13	95	57.974	Papio_anubis
ENSDARG00000102846	trmt13	98	65.152	ENSPKIG00000001514	trmt13	99	65.152	Paramormyrops_kingsleyae
ENSDARG00000102846	trmt13	87	57.820	ENSPSIG00000012703	TRMT13	99	57.820	Pelodiscus_sinensis
ENSDARG00000102846	trmt13	97	54.788	ENSPMGG00000013298	trmt13	95	53.289	Periophthalmus_magnuspinnatus
ENSDARG00000102846	trmt13	96	56.087	ENSPEMG00000000275	Trmt13	95	56.087	Peromyscus_maniculatus_bairdii
ENSDARG00000102846	trmt13	96	46.737	ENSPMAG00000000823	trmt13	99	46.473	Petromyzon_marinus
ENSDARG00000102846	trmt13	98	55.696	ENSPCIG00000007699	TRMT13	98	56.118	Phascolarctos_cinereus
ENSDARG00000102846	trmt13	96	54.000	ENSPFOG00000008675	trmt13	95	54.000	Poecilia_formosa
ENSDARG00000102846	trmt13	97	53.680	ENSPLAG00000009709	trmt13	99	53.680	Poecilia_latipinna
ENSDARG00000102846	trmt13	96	52.928	ENSPMEG00000022954	trmt13	99	52.928	Poecilia_mexicana
ENSDARG00000102846	trmt13	79	55.937	ENSPREG00000005645	trmt13	93	55.872	Poecilia_reticulata
ENSDARG00000102846	trmt13	98	56.813	ENSPPYG00000001120	TRMT13	98	56.813	Pongo_abelii
ENSDARG00000102846	trmt13	96	57.359	ENSPCAG00000002340	TRMT13	95	57.359	Procavia_capensis
ENSDARG00000102846	trmt13	96	56.250	ENSPCOG00000017984	TRMT13	95	56.250	Propithecus_coquereli
ENSDARG00000102846	trmt13	96	56.897	ENSPVAG00000017430	TRMT13	95	56.897	Pteropus_vampyrus
ENSDARG00000102846	trmt13	97	55.482	ENSPNYG00000013690	trmt13	99	55.482	Pundamilia_nyererei
ENSDARG00000102846	trmt13	98	71.674	ENSPNAG00000022130	trmt13	100	71.674	Pygocentrus_nattereri
ENSDARG00000102846	trmt13	96	57.609	ENSRNOG00000015140	Trmt13	92	57.609	Rattus_norvegicus
ENSDARG00000102846	trmt13	96	57.974	ENSRBIG00000037686	TRMT13	95	57.974	Rhinopithecus_bieti
ENSDARG00000102846	trmt13	96	57.974	ENSRROG00000044057	TRMT13	95	57.974	Rhinopithecus_roxellana
ENSDARG00000102846	trmt13	96	57.543	ENSSBOG00000026541	TRMT13	95	57.543	Saimiri_boliviensis_boliviensis
ENSDARG00000102846	trmt13	90	57.506	ENSSHAG00000005213	TRMT13	96	57.506	Sarcophilus_harrisii
ENSDARG00000102846	trmt13	98	63.696	ENSSFOG00015017560	trmt13	99	63.420	Scleropages_formosus
ENSDARG00000102846	trmt13	97	53.017	ENSSMAG00000014592	trmt13	97	53.017	Scophthalmus_maximus
ENSDARG00000102846	trmt13	97	55.414	ENSSDUG00000015508	trmt13	96	55.414	Seriola_dumerili
ENSDARG00000102846	trmt13	97	55.414	ENSSLDG00000019060	trmt13	97	55.414	Seriola_lalandi_dorsalis
ENSDARG00000102846	trmt13	95	51.087	ENSSARG00000010344	TRMT13	96	51.087	Sorex_araneus
ENSDARG00000102846	trmt13	95	57.743	ENSSPUG00000016339	TRMT13	98	57.743	Sphenodon_punctatus
ENSDARG00000102846	trmt13	97	57.330	ENSSPAG00000011922	trmt13	98	57.330	Stegastes_partitus
ENSDARG00000102846	trmt13	96	56.897	ENSSSCG00000006869	TRMT13	95	56.897	Sus_scrofa
ENSDARG00000102846	trmt13	96	60.088	ENSTGUG00000005253	TRMT13	98	60.088	Taeniopygia_guttata
ENSDARG00000102846	trmt13	96	52.381	ENSTRUG00000008400	trmt13	97	52.381	Takifugu_rubripes
ENSDARG00000102846	trmt13	85	46.078	ENSTBEG00000008911	TRMT13	98	46.078	Tupaia_belangeri
ENSDARG00000102846	trmt13	96	54.545	ENSUAMG00000017251	TRMT13	95	54.545	Ursus_americanus
ENSDARG00000102846	trmt13	96	57.235	ENSUMAG00000007901	TRMT13	97	56.909	Ursus_maritimus
ENSDARG00000102846	trmt13	89	46.604	ENSVPAG00000001034	TRMT13	98	46.604	Vicugna_pacos
ENSDARG00000102846	trmt13	96	57.328	ENSVVUG00000021996	TRMT13	95	57.328	Vulpes_vulpes
ENSDARG00000102846	trmt13	98	54.605	ENSXETG00000013204	trmt13	99	54.605	Xenopus_tropicalis
ENSDARG00000102846	trmt13	97	52.381	ENSXMAG00000010765	trmt13	99	52.381	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005575	cellular_component	-	ND	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0008175	tRNA methyltransferase activity	21873635.	IBA	Function
GO:0030488	tRNA methylation	21873635.	IBA	Process
GO:0030488	tRNA methylation	-	IEA	Process
GO:0106050	tRNA 2'-O-methyltransferase activity	-	IEA	Function