EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103066 (Gene tree)
Gene ID: 100331917
Gene Symbol: si:ch73-14h10.2
Alias: wu:fe48h10|zgc:101795
Full Name: si:ch73-14h10.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6218 bases
Position: chr6:28205296-28211513
Accession: ZDB-GENE-141222-67
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000156037	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000166988	-	547	-	ENSDARP00000131633	70 (aa)	-	A0A0R4IES0
ENSDART00000171216	-	472	-	ENSDARP00000140740	34 (aa)	-	A0A0R4IWH4
ENSDART00000167389	-	487	-	ENSDARP00000131699	70 (aa)	-	A0A0R4IES0
ENSDART00000190509	-	4736	-	ENSDARP00000156037	95 (aa)	-	Q5RKP8
ENSDART00000171377	-	812	-	ENSDARP00000130821	76 (aa)	-	A0A0R4IA70
ENSDART00000164466	-	348	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000103066's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03018	RNA degradation	KEGG
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103066's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103066	si:ch73-14h10.2	82	35.000	ENSDARG00000023852	lsm4	54	35.000
ENSDARG00000103066	si:ch73-14h10.2	100	100.000	ENSDARG00000070867	smx5	100	100.000

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component