EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103237 (Gene tree)
Gene ID: 101883754
Gene Symbol: si:ch73-299h12.8
Alias: -
Full Name: si:ch73-299h12.8
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 5983 bases
Position: chr21:2342856-2348838
Accession: ZDB-GENE-081031-66
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000138439	zf-C2H2	PF00096.26	2.3e-27	1	5
ENSDARP00000138439	zf-C2H2	PF00096.26	2.3e-27	2	5
ENSDARP00000138439	zf-C2H2	PF00096.26	2.3e-27	3	5
ENSDARP00000138439	zf-C2H2	PF00096.26	2.3e-27	4	5
ENSDARP00000138439	zf-C2H2	PF00096.26	2.3e-27	5	5
ENSDARP00000138439	zf-met	PF12874.7	2.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000160337	-	750	XM_021468954	ENSDARP00000138439	200 (aa)	XP_021324629	A0A0R4IUZ3

Gene Model

Click here to download ENSDARG00000103237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103237's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103237	si:ch73-299h12.8	100	51.515	ENSDARG00000101093	zgc:162971	99	45.402
ENSDARG00000103237	si:ch73-299h12.8	99	43.791	ENSDARG00000100587	zgc:113886	97	42.405
ENSDARG00000103237	si:ch73-299h12.8	99	38.298	ENSDARG00000088507	znf982	98	46.328
ENSDARG00000103237	si:ch73-299h12.8	100	42.731	ENSDARG00000113380	BX510922.3	90	42.731

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function