EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103316 (Gene tree)
Gene ID: 562900
Gene Symbol: si:ch211-212k18.5
Alias: fb25b09|wu:fb25b09
Full Name: si:ch211-212k18.5
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6462 bases
Position: chr7:19552381-19558842
Accession: ZDB-GENE-030131-379
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130030	zf-C2H2	PF00096.26	4.9e-19	1	2
ENSDARP00000130030	zf-C2H2	PF00096.26	4.9e-19	2	2
ENSDARP00000130030	zf-met	PF12874.7	1.3e-12	1	2
ENSDARP00000130030	zf-met	PF12874.7	1.3e-12	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000169060	-	4443	XM_021477752	ENSDARP00000130030	1139 (aa)	XP_021333427	A0A0R4I9L7

Gene Model

Click here to download ENSDARG00000103316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103316's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103316	si:ch211-212k18.5	71	48.276	ENSDARG00000075116	sall2	68	71.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103316	si:ch211-212k18.5	73	65.714	ENSAPOG00000015347	sall2	70	65.714	Acanthochromis_polyacanthus
ENSDARG00000103316	si:ch211-212k18.5	95	56.044	ENSAPOG00000013387	si:ch211-212k18.5	97	56.079	Acanthochromis_polyacanthus
ENSDARG00000103316	si:ch211-212k18.5	78	61.048	ENSACIG00000019922	si:ch211-212k18.5	98	62.129	Amphilophus_citrinellus
ENSDARG00000103316	si:ch211-212k18.5	98	56.057	ENSAOCG00000010737	si:ch211-212k18.5	98	56.475	Amphiprion_ocellaris
ENSDARG00000103316	si:ch211-212k18.5	98	56.250	ENSAPEG00000006751	si:ch211-212k18.5	98	56.583	Amphiprion_percula
ENSDARG00000103316	si:ch211-212k18.5	70	65.774	ENSATEG00000001254	si:ch211-212k18.5	92	66.589	Anabas_testudineus
ENSDARG00000103316	si:ch211-212k18.5	57	65.714	ENSATEG00000007303	sall2	67	65.714	Anabas_testudineus
ENSDARG00000103316	si:ch211-212k18.5	94	56.426	ENSACLG00000009709	si:ch211-212k18.5	95	57.105	Astatotilapia_calliptera
ENSDARG00000103316	si:ch211-212k18.5	61	65.714	ENSACLG00000019867	sall2	67	65.714	Astatotilapia_calliptera
ENSDARG00000103316	si:ch211-212k18.5	52	51.858	ENSAMXG00000020956	sall2	51	60.784	Astyanax_mexicanus
ENSDARG00000103316	si:ch211-212k18.5	100	66.325	ENSAMXG00000010979	si:ch211-212k18.5	100	66.838	Astyanax_mexicanus
ENSDARG00000103316	si:ch211-212k18.5	70	52.189	ENSCSEG00000004426	si:ch211-212k18.5	96	54.052	Cynoglossus_semilaevis
ENSDARG00000103316	si:ch211-212k18.5	56	45.293	ENSCSEG00000021148	sall2	62	65.714	Cynoglossus_semilaevis
ENSDARG00000103316	si:ch211-212k18.5	97	53.455	ENSCVAG00000007475	si:ch211-212k18.5	97	54.250	Cyprinodon_variegatus
ENSDARG00000103316	si:ch211-212k18.5	62	64.865	ENSCVAG00000006032	sall2	70	64.865	Cyprinodon_variegatus
ENSDARG00000103316	si:ch211-212k18.5	53	52.210	ENSELUG00000004389	sall2	66	51.832	Esox_lucius
ENSDARG00000103316	si:ch211-212k18.5	94	54.675	ENSELUG00000024534	si:ch211-212k18.5	98	55.476	Esox_lucius
ENSDARG00000103316	si:ch211-212k18.5	99	53.905	ENSFHEG00000017264	si:ch211-212k18.5	98	54.962	Fundulus_heteroclitus
ENSDARG00000103316	si:ch211-212k18.5	58	64.865	ENSFHEG00000017550	sall2	67	64.865	Fundulus_heteroclitus
ENSDARG00000103316	si:ch211-212k18.5	67	45.943	ENSGAFG00000015194	sall2	68	63.158	Gambusia_affinis
ENSDARG00000103316	si:ch211-212k18.5	99	52.263	ENSGAFG00000003746	si:ch211-212k18.5	99	53.198	Gambusia_affinis
ENSDARG00000103316	si:ch211-212k18.5	94	56.426	ENSHBUG00000019672	si:ch211-212k18.5	99	55.708	Haplochromis_burtoni
ENSDARG00000103316	si:ch211-212k18.5	73	65.714	ENSHBUG00000002882	sall2	70	65.714	Haplochromis_burtoni
ENSDARG00000103316	si:ch211-212k18.5	97	52.024	ENSHCOG00000002842	si:ch211-212k18.5	99	52.263	Hippocampus_comes
ENSDARG00000103316	si:ch211-212k18.5	97	64.877	ENSIPUG00000002559	sall2	96	65.845	Ictalurus_punctatus
ENSDARG00000103316	si:ch211-212k18.5	58	64.865	ENSKMAG00000020172	sall2	67	64.865	Kryptolebias_marmoratus
ENSDARG00000103316	si:ch211-212k18.5	95	53.898	ENSKMAG00000019657	si:ch211-212k18.5	95	55.745	Kryptolebias_marmoratus
ENSDARG00000103316	si:ch211-212k18.5	95	56.868	ENSLBEG00000020887	si:ch211-212k18.5	95	57.018	Labrus_bergylta
ENSDARG00000103316	si:ch211-212k18.5	71	65.098	ENSMAMG00000015887	si:ch211-212k18.5	99	66.016	Mastacembelus_armatus
ENSDARG00000103316	si:ch211-212k18.5	56	65.714	ENSMAMG00000016229	sall2	66	65.714	Mastacembelus_armatus
ENSDARG00000103316	si:ch211-212k18.5	73	65.714	ENSMZEG00005012103	sall2	70	65.714	Maylandia_zebra
ENSDARG00000103316	si:ch211-212k18.5	94	56.426	ENSMZEG00005021214	si:ch211-212k18.5	95	57.105	Maylandia_zebra
ENSDARG00000103316	si:ch211-212k18.5	70	65.497	ENSMMOG00000012726	si:ch211-212k18.5	90	65.848	Mola_mola
ENSDARG00000103316	si:ch211-212k18.5	92	54.066	ENSMALG00000000979	si:ch211-212k18.5	97	55.478	Monopterus_albus
ENSDARG00000103316	si:ch211-212k18.5	96	56.655	ENSNBRG00000023948	si:ch211-212k18.5	97	56.868	Neolamprologus_brichardi
ENSDARG00000103316	si:ch211-212k18.5	94	43.069	ENSNBRG00000017645	sall2	99	42.371	Neolamprologus_brichardi
ENSDARG00000103316	si:ch211-212k18.5	57	65.714	ENSORLG00000026871	sall2	66	65.714	Oryzias_latipes
ENSDARG00000103316	si:ch211-212k18.5	98	53.081	ENSORLG00000030429	si:ch211-212k18.5	99	53.597	Oryzias_latipes
ENSDARG00000103316	si:ch211-212k18.5	57	65.714	ENSORLG00020007873	sall2	66	65.714	Oryzias_latipes_hni
ENSDARG00000103316	si:ch211-212k18.5	98	52.299	ENSORLG00020008145	si:ch211-212k18.5	99	54.074	Oryzias_latipes_hni
ENSDARG00000103316	si:ch211-212k18.5	57	65.714	ENSORLG00015002422	sall2	66	65.714	Oryzias_latipes_hsok
ENSDARG00000103316	si:ch211-212k18.5	98	52.303	ENSORLG00015004982	si:ch211-212k18.5	99	53.416	Oryzias_latipes_hsok
ENSDARG00000103316	si:ch211-212k18.5	57	65.714	ENSOMEG00000012904	sall2	64	65.714	Oryzias_melastigma
ENSDARG00000103316	si:ch211-212k18.5	95	53.170	ENSOMEG00000013949	si:ch211-212k18.5	96	54.061	Oryzias_melastigma
ENSDARG00000103316	si:ch211-212k18.5	72	70.968	ENSPKIG00000009207	sall2	68	70.968	Paramormyrops_kingsleyae
ENSDARG00000103316	si:ch211-212k18.5	94	53.622	ENSPMGG00000018714	si:ch211-212k18.5	99	54.037	Periophthalmus_magnuspinnatus
ENSDARG00000103316	si:ch211-212k18.5	95	54.301	ENSPFOG00000023705	si:ch211-212k18.5	99	55.488	Poecilia_formosa
ENSDARG00000103316	si:ch211-212k18.5	58	63.158	ENSPFOG00000016504	sall2	68	63.158	Poecilia_formosa
ENSDARG00000103316	si:ch211-212k18.5	95	54.359	ENSPLAG00000002577	si:ch211-212k18.5	99	53.577	Poecilia_latipinna
ENSDARG00000103316	si:ch211-212k18.5	55	46.113	ENSPLAG00000018320	sall2	68	63.158	Poecilia_latipinna
ENSDARG00000103316	si:ch211-212k18.5	58	63.158	ENSPMEG00000006335	sall2	68	63.158	Poecilia_mexicana
ENSDARG00000103316	si:ch211-212k18.5	95	54.056	ENSPMEG00000016395	si:ch211-212k18.5	99	55.268	Poecilia_mexicana
ENSDARG00000103316	si:ch211-212k18.5	59	63.158	ENSPREG00000021908	sall2	68	63.158	Poecilia_reticulata
ENSDARG00000103316	si:ch211-212k18.5	99	52.016	ENSPREG00000005292	si:ch211-212k18.5	99	53.055	Poecilia_reticulata
ENSDARG00000103316	si:ch211-212k18.5	96	55.824	ENSPNYG00000021576	si:ch211-212k18.5	96	56.245	Pundamilia_nyererei
ENSDARG00000103316	si:ch211-212k18.5	99	67.842	ENSPNAG00000006123	si:ch211-212k18.5	99	69.132	Pygocentrus_nattereri
ENSDARG00000103316	si:ch211-212k18.5	75	68.571	ENSSMAG00000014157	sall2	71	68.571	Scophthalmus_maximus
ENSDARG00000103316	si:ch211-212k18.5	98	54.305	ENSSMAG00000006241	si:ch211-212k18.5	98	55.307	Scophthalmus_maximus
ENSDARG00000103316	si:ch211-212k18.5	96	56.329	ENSSDUG00000006164	si:ch211-212k18.5	96	56.748	Seriola_dumerili
ENSDARG00000103316	si:ch211-212k18.5	73	65.714	ENSSDUG00000012274	sall2	69	65.714	Seriola_dumerili
ENSDARG00000103316	si:ch211-212k18.5	96	56.412	ENSSLDG00000003393	si:ch211-212k18.5	96	56.832	Seriola_lalandi_dorsalis
ENSDARG00000103316	si:ch211-212k18.5	73	65.714	ENSSLDG00000001653	sall2	69	65.714	Seriola_lalandi_dorsalis
ENSDARG00000103316	si:ch211-212k18.5	64	65.714	ENSSPAG00000023009	sall2	70	65.714	Stegastes_partitus
ENSDARG00000103316	si:ch211-212k18.5	97	56.658	ENSSPAG00000013435	si:ch211-212k18.5	99	57.578	Stegastes_partitus
ENSDARG00000103316	si:ch211-212k18.5	70	66.264	ENSTRUG00000025082	si:ch211-212k18.5	78	65.707	Takifugu_rubripes
ENSDARG00000103316	si:ch211-212k18.5	58	65.714	ENSTRUG00000024556	sall2	63	65.714	Takifugu_rubripes
ENSDARG00000103316	si:ch211-212k18.5	99	52.627	ENSXCOG00000000762	si:ch211-212k18.5	99	53.498	Xiphophorus_couchianus
ENSDARG00000103316	si:ch211-212k18.5	99	52.013	ENSXMAG00000001461	si:ch211-212k18.5	99	52.960	Xiphophorus_maculatus
ENSDARG00000103316	si:ch211-212k18.5	64	46.194	ENSXMAG00000000902	sall2	68	63.158	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function