EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103318 (Gene tree)
Gene ID: 336283
Gene Symbol: mrpl3
Alias: fj61d01|wu:fj61d01|zgc:66423
Full Name: mitochondrial ribosomal protein L3
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 23413 bases
Position: chr19:19193851-19217263
Accession: ZDB-GENE-030131-8227
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000141505	Ribosomal_L3	PF00297.22	1.2e-49	1	2
ENSDARP00000141505	Ribosomal_L3	PF00297.22	1.2e-49	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000161570	-	1380	XM_005159511	ENSDARP00000141505	345 (aa)	XP_005159568	A0A0R4IY00

Gene Model

Click here to download ENSDARG00000103318's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103318's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103318	mrpl3	97	60.983	ENSG00000114686	MRPL3	100	68.590	Homo_sapiens
ENSDARG00000103318	mrpl3	99	69.971	ENSAPOG00000006179	mrpl3	96	74.026	Acanthochromis_polyacanthus
ENSDARG00000103318	mrpl3	87	65.894	ENSAMEG00000014272	MRPL3	80	65.894	Ailuropoda_melanoleuca
ENSDARG00000103318	mrpl3	87	30.492	ENSACIG00000009210	-	81	30.492	Amphilophus_citrinellus
ENSDARG00000103318	mrpl3	99	68.222	ENSACIG00000015992	mrpl3	99	68.222	Amphilophus_citrinellus
ENSDARG00000103318	mrpl3	99	70.554	ENSAOCG00000024456	mrpl3	99	70.554	Amphiprion_ocellaris
ENSDARG00000103318	mrpl3	99	70.554	ENSAPEG00000015997	mrpl3	99	70.554	Amphiprion_percula
ENSDARG00000103318	mrpl3	99	68.605	ENSATEG00000017145	mrpl3	99	68.805	Anabas_testudineus
ENSDARG00000103318	mrpl3	86	69.697	ENSAPLG00000011128	MRPL3	94	69.697	Anas_platyrhynchos
ENSDARG00000103318	mrpl3	91	64.650	ENSACAG00000001596	MRPL3	97	61.337	Anolis_carolinensis
ENSDARG00000103318	mrpl3	87	66.225	ENSANAG00000021528	-	86	66.225	Aotus_nancymaae
ENSDARG00000103318	mrpl3	93	59.819	ENSANAG00000023191	-	94	59.819	Aotus_nancymaae
ENSDARG00000103318	mrpl3	94	70.279	ENSACLG00000020843	mrpl3	99	69.388	Astatotilapia_calliptera
ENSDARG00000103318	mrpl3	99	78.098	ENSAMXG00000043612	mrpl3	99	78.098	Astyanax_mexicanus
ENSDARG00000103318	mrpl3	87	67.881	ENSBTAG00000030942	MRPL3	93	65.635	Bos_taurus
ENSDARG00000103318	mrpl3	66	40.741	WBGene00016142	mrps-18C	64	39.535	Caenorhabditis_elegans
ENSDARG00000103318	mrpl3	87	66.225	ENSCJAG00000003143	MRPL3	86	66.225	Callithrix_jacchus
ENSDARG00000103318	mrpl3	87	67.550	ENSCAFG00000006125	MRPL3	86	67.550	Canis_familiaris
ENSDARG00000103318	mrpl3	87	67.550	ENSCAFG00020027448	MRPL3	86	67.550	Canis_lupus_dingo
ENSDARG00000103318	mrpl3	87	67.219	ENSCHIG00000024783	MRPL3	93	65.015	Capra_hircus
ENSDARG00000103318	mrpl3	87	65.894	ENSTSYG00000003691	MRPL3	86	65.894	Carlito_syrichta
ENSDARG00000103318	mrpl3	87	59.272	ENSCAPG00000013574	MRPL3	88	59.272	Cavia_aperea
ENSDARG00000103318	mrpl3	87	66.556	ENSCPOG00000021216	MRPL3	86	66.556	Cavia_porcellus
ENSDARG00000103318	mrpl3	87	65.563	ENSCCAG00000030011	MRPL3	86	65.563	Cebus_capucinus
ENSDARG00000103318	mrpl3	87	67.219	ENSCATG00000038023	MRPL3	86	67.219	Cercocebus_atys
ENSDARG00000103318	mrpl3	87	66.556	ENSCLAG00000003513	MRPL3	98	61.207	Chinchilla_lanigera
ENSDARG00000103318	mrpl3	87	67.219	ENSCSAG00000010510	MRPL3	86	67.219	Chlorocebus_sabaeus
ENSDARG00000103318	mrpl3	87	43.377	ENSCHOG00000013862	MRPL3	86	43.377	Choloepus_hoffmanni
ENSDARG00000103318	mrpl3	94	69.939	ENSCPBG00000022852	MRPL3	94	69.939	Chrysemys_picta_bellii
ENSDARG00000103318	mrpl3	85	44.667	ENSCING00000008395	-	76	44.667	Ciona_intestinalis
ENSDARG00000103318	mrpl3	79	46.786	ENSCSAVG00000006945	-	99	46.786	Ciona_savignyi
ENSDARG00000103318	mrpl3	87	66.556	ENSCANG00000031568	MRPL3	86	66.556	Colobus_angolensis_palliatus
ENSDARG00000103318	mrpl3	93	64.157	ENSCGRG00001016688	Mrpl3	95	64.157	Cricetulus_griseus_chok1gshd
ENSDARG00000103318	mrpl3	93	64.157	ENSCGRG00000015457	Mrpl3	82	64.157	Cricetulus_griseus_crigri
ENSDARG00000103318	mrpl3	99	70.845	ENSCSEG00000008636	mrpl3	99	70.845	Cynoglossus_semilaevis
ENSDARG00000103318	mrpl3	94	67.802	ENSCVAG00000011820	mrpl3	98	66.472	Cyprinodon_variegatus
ENSDARG00000103318	mrpl3	86	66.555	ENSDNOG00000047253	MRPL3	85	66.555	Dasypus_novemcinctus
ENSDARG00000103318	mrpl3	76	69.318	ENSDORG00000029436	Mrpl3	97	69.318	Dipodomys_ordii
ENSDARG00000103318	mrpl3	85	41.558	FBgn0030686	mRpL3	84	41.558	Drosophila_melanogaster
ENSDARG00000103318	mrpl3	87	59.934	ENSETEG00000010458	MRPL3	88	59.934	Echinops_telfairi
ENSDARG00000103318	mrpl3	85	59.589	ENSEBUG00000009944	mrpl3	98	59.589	Eptatretus_burgeri
ENSDARG00000103318	mrpl3	87	65.232	ENSEASG00005005550	MRPL3	84	65.232	Equus_asinus_asinus
ENSDARG00000103318	mrpl3	87	64.901	ENSECAG00000016736	MRPL3	86	64.901	Equus_caballus
ENSDARG00000103318	mrpl3	73	62.302	ENSEEUG00000015033	MRPL3	98	62.302	Erinaceus_europaeus
ENSDARG00000103318	mrpl3	96	65.165	ENSELUG00000003470	mrpl3	97	68.439	Esox_lucius
ENSDARG00000103318	mrpl3	92	65.015	ENSFCAG00000006335	MRPL3	93	65.015	Felis_catus
ENSDARG00000103318	mrpl3	88	69.508	ENSFALG00000012506	MRPL3	90	69.508	Ficedula_albicollis
ENSDARG00000103318	mrpl3	92	65.432	ENSFDAG00000017320	MRPL3	93	65.432	Fukomys_damarensis
ENSDARG00000103318	mrpl3	99	66.472	ENSFHEG00000023451	mrpl3	95	69.841	Fundulus_heteroclitus
ENSDARG00000103318	mrpl3	89	72.727	ENSGMOG00000017025	mrpl3	97	72.727	Gadus_morhua
ENSDARG00000103318	mrpl3	86	69.463	ENSGALG00000040873	MRPL3	85	69.463	Gallus_gallus
ENSDARG00000103318	mrpl3	99	66.472	ENSGAFG00000018445	mrpl3	98	66.472	Gambusia_affinis
ENSDARG00000103318	mrpl3	99	67.638	ENSGACG00000006011	mrpl3	99	67.638	Gasterosteus_aculeatus
ENSDARG00000103318	mrpl3	96	69.697	ENSGAGG00000019040	MRPL3	95	69.697	Gopherus_agassizii
ENSDARG00000103318	mrpl3	87	54.455	ENSGGOG00000025644	-	85	54.455	Gorilla_gorilla
ENSDARG00000103318	mrpl3	97	60.983	ENSGGOG00000011128	MRPL3	94	60.983	Gorilla_gorilla
ENSDARG00000103318	mrpl3	94	70.279	ENSHBUG00000019966	mrpl3	99	69.388	Haplochromis_burtoni
ENSDARG00000103318	mrpl3	93	63.554	ENSHGLG00000016782	MRPL3	95	63.554	Heterocephalus_glaber_female
ENSDARG00000103318	mrpl3	93	63.554	ENSHGLG00100014743	MRPL3	95	63.554	Heterocephalus_glaber_male
ENSDARG00000103318	mrpl3	98	68.639	ENSHCOG00000011011	mrpl3	97	68.639	Hippocampus_comes
ENSDARG00000103318	mrpl3	99	74.709	ENSIPUG00000011902	mrpl3	99	74.709	Ictalurus_punctatus
ENSDARG00000103318	mrpl3	87	66.887	ENSSTOG00000012804	MRPL3	86	66.887	Ictidomys_tridecemlineatus
ENSDARG00000103318	mrpl3	90	66.561	ENSJJAG00000006706	Mrpl3	98	63.636	Jaculus_jaculus
ENSDARG00000103318	mrpl3	94	69.969	ENSKMAG00000002193	mrpl3	98	69.096	Kryptolebias_marmoratus
ENSDARG00000103318	mrpl3	98	69.617	ENSLBEG00000000445	mrpl3	97	69.617	Labrus_bergylta
ENSDARG00000103318	mrpl3	99	68.895	ENSLOCG00000001514	mrpl3	99	68.481	Lepisosteus_oculatus
ENSDARG00000103318	mrpl3	87	66.556	ENSLAFG00000012176	MRPL3	98	62.391	Loxodonta_africana
ENSDARG00000103318	mrpl3	87	66.887	ENSMFAG00000003455	MRPL3	86	66.887	Macaca_fascicularis
ENSDARG00000103318	mrpl3	87	66.887	ENSMMUG00000000220	MRPL3	86	66.887	Macaca_mulatta
ENSDARG00000103318	mrpl3	87	66.556	ENSMNEG00000042711	MRPL3	86	66.556	Macaca_nemestrina
ENSDARG00000103318	mrpl3	87	67.219	ENSMLEG00000029925	MRPL3	86	67.219	Mandrillus_leucophaeus
ENSDARG00000103318	mrpl3	99	69.388	ENSMAMG00000010715	mrpl3	99	69.388	Mastacembelus_armatus
ENSDARG00000103318	mrpl3	94	70.279	ENSMZEG00005006750	mrpl3	99	69.388	Maylandia_zebra
ENSDARG00000103318	mrpl3	86	68.350	ENSMGAG00000011444	MRPL3	94	68.350	Meleagris_gallopavo
ENSDARG00000103318	mrpl3	93	63.855	ENSMAUG00000006653	Mrpl3	95	63.855	Mesocricetus_auratus
ENSDARG00000103318	mrpl3	87	66.887	ENSMICG00000049541	-	86	66.887	Microcebus_murinus
ENSDARG00000103318	mrpl3	98	58.112	ENSMICG00000033138	-	98	58.112	Microcebus_murinus
ENSDARG00000103318	mrpl3	89	67.961	ENSMOCG00000019372	Mrpl3	89	67.961	Microtus_ochrogaster
ENSDARG00000103318	mrpl3	89	70.779	ENSMMOG00000019894	mrpl3	99	66.667	Mola_mola
ENSDARG00000103318	mrpl3	87	68.439	ENSMODG00000011873	MRPL3	85	68.439	Monodelphis_domestica
ENSDARG00000103318	mrpl3	93	70.807	ENSMALG00000017620	mrpl3	98	70.807	Monopterus_albus
ENSDARG00000103318	mrpl3	87	67.219	MGP_CAROLIEiJ_G0032601	Mrpl3	98	63.211	Mus_caroli
ENSDARG00000103318	mrpl3	93	63.253	ENSMUSG00000032563	Mrpl3	95	63.253	Mus_musculus
ENSDARG00000103318	mrpl3	87	66.887	MGP_PahariEiJ_G0015469	Mrpl3	95	64.041	Mus_pahari
ENSDARG00000103318	mrpl3	93	63.253	MGP_SPRETEiJ_G0033747	Mrpl3	95	63.253	Mus_spretus
ENSDARG00000103318	mrpl3	87	66.887	ENSMPUG00000010052	MRPL3	86	66.887	Mustela_putorius_furo
ENSDARG00000103318	mrpl3	85	66.107	ENSMLUG00000008515	MRPL3	85	66.107	Myotis_lucifugus
ENSDARG00000103318	mrpl3	87	67.219	ENSNGAG00000010660	Mrpl3	86	67.219	Nannospalax_galili
ENSDARG00000103318	mrpl3	94	70.588	ENSNBRG00000009401	mrpl3	99	69.679	Neolamprologus_brichardi
ENSDARG00000103318	mrpl3	87	65.894	ENSNLEG00000002810	MRPL3	86	65.894	Nomascus_leucogenys
ENSDARG00000103318	mrpl3	87	55.150	ENSMEUG00000016391	MRPL3	94	55.150	Notamacropus_eugenii
ENSDARG00000103318	mrpl3	87	60.265	ENSOPRG00000000501	MRPL3	95	60.265	Ochotona_princeps
ENSDARG00000103318	mrpl3	80	65.455	ENSODEG00000018142	-	86	65.455	Octodon_degus
ENSDARG00000103318	mrpl3	87	65.894	ENSODEG00000018670	-	87	65.894	Octodon_degus
ENSDARG00000103318	mrpl3	94	71.207	ENSONIG00000002051	mrpl3	85	70.326	Oreochromis_niloticus
ENSDARG00000103318	mrpl3	69	68.201	ENSOANG00000006770	MRPL3	98	68.201	Ornithorhynchus_anatinus
ENSDARG00000103318	mrpl3	93	63.253	ENSOCUG00000002951	MRPL3	95	63.253	Oryctolagus_cuniculus
ENSDARG00000103318	mrpl3	99	67.638	ENSORLG00000003736	mrpl3	99	67.638	Oryzias_latipes
ENSDARG00000103318	mrpl3	99	67.442	ENSORLG00020002193	mrpl3	99	67.638	Oryzias_latipes_hni
ENSDARG00000103318	mrpl3	99	67.347	ENSORLG00015012654	mrpl3	99	67.347	Oryzias_latipes_hsok
ENSDARG00000103318	mrpl3	99	66.570	ENSOMEG00000015235	mrpl3	99	66.570	Oryzias_melastigma
ENSDARG00000103318	mrpl3	87	67.550	ENSOGAG00000016133	MRPL3	82	67.550	Otolemur_garnettii
ENSDARG00000103318	mrpl3	87	67.219	ENSOARG00000009221	MRPL3	88	64.815	Ovis_aries
ENSDARG00000103318	mrpl3	87	57.285	ENSPPAG00000034479	-	85	57.285	Pan_paniscus
ENSDARG00000103318	mrpl3	93	62.840	ENSPPAG00000015358	MRPL3	94	62.840	Pan_paniscus
ENSDARG00000103318	mrpl3	87	66.887	ENSPPRG00000015417	MRPL3	86	66.887	Panthera_pardus
ENSDARG00000103318	mrpl3	87	66.887	ENSPTIG00000012251	MRPL3	80	66.887	Panthera_tigris_altaica
ENSDARG00000103318	mrpl3	87	57.285	ENSPTRG00000045519	-	85	57.285	Pan_troglodytes
ENSDARG00000103318	mrpl3	93	62.840	ENSPTRG00000015396	MRPL3	94	62.840	Pan_troglodytes
ENSDARG00000103318	mrpl3	87	67.219	ENSPANG00000017085	MRPL3	86	67.219	Papio_anubis
ENSDARG00000103318	mrpl3	99	72.222	ENSPKIG00000023678	mrpl3	98	72.222	Paramormyrops_kingsleyae
ENSDARG00000103318	mrpl3	69	72.996	ENSPSIG00000002908	MRPL3	98	72.996	Pelodiscus_sinensis
ENSDARG00000103318	mrpl3	99	67.733	ENSPMGG00000023558	mrpl3	99	67.930	Periophthalmus_magnuspinnatus
ENSDARG00000103318	mrpl3	93	63.855	ENSPEMG00000012061	Mrpl3	95	63.855	Peromyscus_maniculatus_bairdii
ENSDARG00000103318	mrpl3	89	66.993	ENSPMAG00000003407	mrpl3	95	66.993	Petromyzon_marinus
ENSDARG00000103318	mrpl3	87	65.232	ENSPCIG00000023992	MRPL3	88	65.232	Phascolarctos_cinereus
ENSDARG00000103318	mrpl3	99	68.314	ENSPFOG00000002850	mrpl3	98	68.314	Poecilia_formosa
ENSDARG00000103318	mrpl3	99	68.513	ENSPLAG00000002981	mrpl3	98	68.513	Poecilia_latipinna
ENSDARG00000103318	mrpl3	99	68.513	ENSPMEG00000002060	mrpl3	98	68.513	Poecilia_mexicana
ENSDARG00000103318	mrpl3	99	67.930	ENSPREG00000003943	mrpl3	97	67.930	Poecilia_reticulata
ENSDARG00000103318	mrpl3	97	59.827	ENSPPYG00000014102	MRPL3	94	59.827	Pongo_abelii
ENSDARG00000103318	mrpl3	87	48.837	ENSPCAG00000008624	MRPL3	86	48.837	Procavia_capensis
ENSDARG00000103318	mrpl3	87	66.556	ENSPCOG00000017228	MRPL3	98	61.290	Propithecus_coquereli
ENSDARG00000103318	mrpl3	99	60.519	ENSPVAG00000012966	MRPL3	99	60.519	Pteropus_vampyrus
ENSDARG00000103318	mrpl3	94	69.969	ENSPNYG00000008358	mrpl3	99	69.096	Pundamilia_nyererei
ENSDARG00000103318	mrpl3	99	76.968	ENSPNAG00000000723	mrpl3	99	76.968	Pygocentrus_nattereri
ENSDARG00000103318	mrpl3	87	66.887	ENSRNOG00000012650	Mrpl3	95	63.253	Rattus_norvegicus
ENSDARG00000103318	mrpl3	87	66.556	ENSRBIG00000033474	MRPL3	86	66.556	Rhinopithecus_bieti
ENSDARG00000103318	mrpl3	87	66.556	ENSRROG00000040393	MRPL3	86	66.556	Rhinopithecus_roxellana
ENSDARG00000103318	mrpl3	62	41.667	YGR220C	MRPL9	79	41.667	Saccharomyces_cerevisiae
ENSDARG00000103318	mrpl3	87	66.225	ENSSBOG00000021018	MRPL3	86	66.225	Saimiri_boliviensis_boliviensis
ENSDARG00000103318	mrpl3	90	65.924	ENSSHAG00000000330	MRPL3	98	65.924	Sarcophilus_harrisii
ENSDARG00000103318	mrpl3	90	75.728	ENSSFOG00015023683	mrpl3	95	75.728	Scleropages_formosus
ENSDARG00000103318	mrpl3	99	68.513	ENSSMAG00000011689	mrpl3	99	68.513	Scophthalmus_maximus
ENSDARG00000103318	mrpl3	99	69.388	ENSSDUG00000007598	mrpl3	99	69.388	Seriola_dumerili
ENSDARG00000103318	mrpl3	99	69.388	ENSSLDG00000008264	mrpl3	99	69.388	Seriola_lalandi_dorsalis
ENSDARG00000103318	mrpl3	87	55.629	ENSSARG00000003782	MRPL3	87	55.629	Sorex_araneus
ENSDARG00000103318	mrpl3	88	68.954	ENSSPUG00000002872	MRPL3	96	64.392	Sphenodon_punctatus
ENSDARG00000103318	mrpl3	99	68.513	ENSSPAG00000021726	mrpl3	99	68.513	Stegastes_partitus
ENSDARG00000103318	mrpl3	96	61.290	ENSSSCG00000011179	MRPL3	85	61.290	Sus_scrofa
ENSDARG00000103318	mrpl3	69	72.269	ENSTGUG00000004204	-	98	72.269	Taeniopygia_guttata
ENSDARG00000103318	mrpl3	99	66.667	ENSTRUG00000009650	mrpl3	99	66.667	Takifugu_rubripes
ENSDARG00000103318	mrpl3	99	67.151	ENSTNIG00000006434	mrpl3	99	67.347	Tetraodon_nigroviridis
ENSDARG00000103318	mrpl3	87	60.265	ENSTTRG00000010358	MRPL3	86	60.265	Tursiops_truncatus
ENSDARG00000103318	mrpl3	87	66.556	ENSUAMG00000000526	MRPL3	86	66.556	Ursus_americanus
ENSDARG00000103318	mrpl3	87	66.556	ENSUMAG00000017621	MRPL3	78	66.556	Ursus_maritimus
ENSDARG00000103318	mrpl3	87	45.847	ENSVPAG00000012253	MRPL3	95	45.847	Vicugna_pacos
ENSDARG00000103318	mrpl3	87	67.550	ENSVVUG00000002847	MRPL3	86	67.550	Vulpes_vulpes
ENSDARG00000103318	mrpl3	95	61.398	ENSXETG00000001845	mrpl3	96	61.398	Xenopus_tropicalis
ENSDARG00000103318	mrpl3	93	65.839	ENSXCOG00000020178	mrpl3	96	65.839	Xiphophorus_couchianus
ENSDARG00000103318	mrpl3	94	69.350	ENSXMAG00000002586	mrpl3	97	68.222	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	-	IEA	Function
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005762	mitochondrial large ribosomal subunit	21873635.	IBA	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006412	translation	-	IEA	Process