EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103337 (Gene tree)
Gene ID: 321059
Gene Symbol: rrp1
Alias: Nop52|cb43|nnp1|sb:cb43|wu:fb37f12|wu:fi05d01
Full Name: ribosomal RNA processing 1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7978 bases
Position: chr9:145093-153070
Accession: ZDB-GENE-030131-9837
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000139145	Nop52	PF05997.12	1.1e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162764	-	2022	XM_021478780	ENSDARP00000139145	673 (aa)	XP_021334455	A0A0G2L325

Gene Model

Click here to download ENSDARG00000103337's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103337's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103337	rrp1	51	46.978	ENSAMEG00000011448	RRP1	74	48.060	Ailuropoda_melanoleuca
ENSDARG00000103337	rrp1	60	44.304	ENSAMEG00000011401	RRP1B	60	44.308	Ailuropoda_melanoleuca
ENSDARG00000103337	rrp1	58	57.576	ENSAOCG00000017894	-	98	54.983	Amphiprion_ocellaris
ENSDARG00000103337	rrp1	99	33.758	ENSANAG00000034889	RRP1B	58	44.510	Aotus_nancymaae
ENSDARG00000103337	rrp1	62	42.149	ENSBTAG00000017418	RRP1B	60	43.976	Bos_taurus
ENSDARG00000103337	rrp1	52	43.548	ENSBTAG00000003981	RRP1	74	46.407	Bos_taurus
ENSDARG00000103337	rrp1	53	43.386	ENSCJAG00000043205	RRP1	69	46.108	Callithrix_jacchus
ENSDARG00000103337	rrp1	99	33.079	ENSCJAG00000017077	RRP1B	58	43.917	Callithrix_jacchus
ENSDARG00000103337	rrp1	50	53.275	ENSCAFG00000010646	RRP1	73	49.645	Canis_familiaris
ENSDARG00000103337	rrp1	53	44.974	ENSCAFG00020018979	RRP1	74	47.904	Canis_lupus_dingo
ENSDARG00000103337	rrp1	52	43.700	ENSCHIG00000020948	RRP1	74	46.269	Capra_hircus
ENSDARG00000103337	rrp1	70	40.816	ENSCHIG00000021519	RRP1B	63	44.311	Capra_hircus
ENSDARG00000103337	rrp1	99	33.627	ENSCCAG00000029384	RRP1B	58	45.210	Cebus_capucinus
ENSDARG00000103337	rrp1	54	43.299	ENSCCAG00000029828	RRP1	73	46.866	Cebus_capucinus
ENSDARG00000103337	rrp1	99	34.056	ENSCATG00000017423	RRP1B	58	44.214	Cercocebus_atys
ENSDARG00000103337	rrp1	59	42.548	ENSCLAG00000011639	RRP1	74	48.328	Chinchilla_lanigera
ENSDARG00000103337	rrp1	58	44.848	ENSCLAG00000005622	RRP1B	57	44.848	Chinchilla_lanigera
ENSDARG00000103337	rrp1	99	34.571	ENSCSAG00000007961	RRP1B	58	45.210	Chlorocebus_sabaeus
ENSDARG00000103337	rrp1	56	33.159	ENSCING00000003304	-	74	35.061	Ciona_intestinalis
ENSDARG00000103337	rrp1	99	34.351	ENSCANG00000040952	RRP1B	58	44.214	Colobus_angolensis_palliatus
ENSDARG00000103337	rrp1	99	33.548	ENSCGRG00001023882	-	72	55.294	Cricetulus_griseus_chok1gshd
ENSDARG00000103337	rrp1	56	43.577	ENSCGRG00001011920	Rrp1	76	46.707	Cricetulus_griseus_chok1gshd
ENSDARG00000103337	rrp1	56	43.577	ENSCGRG00000008915	Rrp1	76	46.707	Cricetulus_griseus_crigri
ENSDARG00000103337	rrp1	99	40.164	ENSCSEG00000020711	-	78	53.644	Cynoglossus_semilaevis
ENSDARG00000103337	rrp1	51	50.136	ENSCVAG00000017568	-	87	52.586	Cyprinodon_variegatus
ENSDARG00000103337	rrp1	58	45.181	ENSDNOG00000032774	RRP1B	58	45.181	Dasypus_novemcinctus
ENSDARG00000103337	rrp1	65	39.738	ENSDNOG00000019880	RRP1	74	46.061	Dasypus_novemcinctus
ENSDARG00000103337	rrp1	66	44.872	ENSETEG00000019489	RRP1B	54	48.052	Echinops_telfairi
ENSDARG00000103337	rrp1	55	42.347	ENSEASG00005001673	RRP1	76	46.903	Equus_asinus_asinus
ENSDARG00000103337	rrp1	55	42.092	ENSECAG00000015703	RRP1	76	47.059	Equus_caballus
ENSDARG00000103337	rrp1	74	50.474	ENSELUG00000015885	-	97	49.260	Esox_lucius
ENSDARG00000103337	rrp1	58	42.500	ENSFCAG00000008434	RRP1	73	48.466	Felis_catus
ENSDARG00000103337	rrp1	59	42.716	ENSFDAG00000013728	RRP1	74	48.910	Fukomys_damarensis
ENSDARG00000103337	rrp1	62	57.143	ENSGMOG00000001953	-	65	56.667	Gadus_morhua
ENSDARG00000103337	rrp1	99	45.259	ENSGACG00000001438	rrp1	99	43.372	Gasterosteus_aculeatus
ENSDARG00000103337	rrp1	54	46.933	ENSHGLG00000017085	RRP1	70	50.779	Heterocephalus_glaber_female
ENSDARG00000103337	rrp1	53	41.509	ENSHGLG00100002232	RRP1B	51	41.509	Heterocephalus_glaber_male
ENSDARG00000103337	rrp1	63	45.906	ENSHCOG00000018388	-	57	45.855	Hippocampus_comes
ENSDARG00000103337	rrp1	59	54.321	ENSIPUG00000000673	-	67	55.682	Ictalurus_punctatus
ENSDARG00000103337	rrp1	55	43.307	ENSSTOG00000011116	RRP1	75	47.664	Ictidomys_tridecemlineatus
ENSDARG00000103337	rrp1	55	44.909	ENSJJAG00000018886	Rrp1	75	47.692	Jaculus_jaculus
ENSDARG00000103337	rrp1	71	44.000	ENSLACG00000017332	-	56	47.293	Latimeria_chalumnae
ENSDARG00000103337	rrp1	62	54.203	ENSLOCG00000004064	-	61	53.959	Lepisosteus_oculatus
ENSDARG00000103337	rrp1	50	52.119	ENSLAFG00000022901	RRP1	77	46.356	Loxodonta_africana
ENSDARG00000103337	rrp1	87	31.169	ENSLAFG00000000766	RRP1B	81	44.092	Loxodonta_africana
ENSDARG00000103337	rrp1	99	32.905	ENSMLEG00000040044	RRP1B	56	43.960	Mandrillus_leucophaeus
ENSDARG00000103337	rrp1	53	47.704	ENSMGAG00000014591	RRP1B	53	50.000	Meleagris_gallopavo
ENSDARG00000103337	rrp1	52	49.740	ENSMMOG00000019175	rrp1	88	53.009	Mola_mola
ENSDARG00000103337	rrp1	59	46.857	ENSMODG00000021033	RRP1B	60	47.977	Monodelphis_domestica
ENSDARG00000103337	rrp1	55	53.985	ENSMALG00000010310	rrp1	90	56.686	Monopterus_albus
ENSDARG00000103337	rrp1	58	41.964	ENSMUSG00000058392	Rrp1b	58	59.420	Mus_musculus
ENSDARG00000103337	rrp1	53	49.398	MGP_SPRETEiJ_G0016321	Rrp1	73	48.014	Mus_spretus
ENSDARG00000103337	rrp1	53	50.806	ENSMPUG00000009826	RRP1	65	52.239	Mustela_putorius_furo
ENSDARG00000103337	rrp1	53	52.273	ENSMLUG00000017788	RRP1	61	50.000	Myotis_lucifugus
ENSDARG00000103337	rrp1	62	45.000	ENSMLUG00000007738	RRP1B	61	45.665	Myotis_lucifugus
ENSDARG00000103337	rrp1	53	43.798	ENSNGAG00000022344	Rrp1	52	43.726	Nannospalax_galili
ENSDARG00000103337	rrp1	53	42.414	ENSOCUG00000025931	RRP1B	59	42.414	Oryctolagus_cuniculus
ENSDARG00000103337	rrp1	90	54.011	ENSORLG00020007199	-	66	54.958	Oryzias_latipes_hni
ENSDARG00000103337	rrp1	90	54.032	ENSORLG00015004425	-	61	54.986	Oryzias_latipes_hsok
ENSDARG00000103337	rrp1	70	52.041	ENSOMEG00000016910	-	54	56.232	Oryzias_melastigma
ENSDARG00000103337	rrp1	53	44.211	ENSOGAG00000006105	RRP1	76	45.697	Otolemur_garnettii
ENSDARG00000103337	rrp1	57	52.542	ENSOGAG00000009872	RRP1B	62	52.542	Otolemur_garnettii
ENSDARG00000103337	rrp1	63	40.510	ENSOARG00000011314	RRP1B	58	44.027	Ovis_aries
ENSDARG00000103337	rrp1	50	46.459	ENSPPRG00000010656	RRP1	74	48.160	Panthera_pardus
ENSDARG00000103337	rrp1	53	45.455	ENSPTIG00000016894	RRP1B	70	41.830	Panthera_tigris_altaica
ENSDARG00000103337	rrp1	54	39.075	ENSPTIG00000019473	RRP1	70	43.279	Panthera_tigris_altaica
ENSDARG00000103337	rrp1	50	45.787	ENSPANG00000015097	RRP1	73	47.605	Papio_anubis
ENSDARG00000103337	rrp1	50	49.157	ENSPMGG00000007512	-	85	48.968	Periophthalmus_magnuspinnatus
ENSDARG00000103337	rrp1	59	45.856	ENSPCIG00000015513	RRP1B	60	47.110	Phascolarctos_cinereus
ENSDARG00000103337	rrp1	59	40.781	ENSPCIG00000015523	-	73	47.892	Phascolarctos_cinereus
ENSDARG00000103337	rrp1	80	42.832	ENSPLAG00000016684	-	50	53.736	Poecilia_latipinna
ENSDARG00000103337	rrp1	67	51.579	ENSPMEG00000007042	-	59	53.736	Poecilia_mexicana
ENSDARG00000103337	rrp1	68	51.872	ENSPREG00000015673	-	59	54.023	Poecilia_reticulata
ENSDARG00000103337	rrp1	63	55.263	ENSPNAG00000007718	-	53	54.674	Pygocentrus_nattereri
ENSDARG00000103337	rrp1	99	34.470	ENSRROG00000031499	RRP1B	58	44.214	Rhinopithecus_roxellana
ENSDARG00000103337	rrp1	54	44.595	ENSSBOG00000034689	RRP1	73	49.057	Saimiri_boliviensis_boliviensis
ENSDARG00000103337	rrp1	94	31.736	ENSSBOG00000034727	RRP1B	57	40.498	Saimiri_boliviensis_boliviensis
ENSDARG00000103337	rrp1	61	45.429	ENSSHAG00000017789	RRP1B	60	46.532	Sarcophilus_harrisii
ENSDARG00000103337	rrp1	56	51.042	ENSSFOG00015003932	-	54	51.042	Scleropages_formosus
ENSDARG00000103337	rrp1	66	54.987	ENSSMAG00000016847	-	90	52.355	Scophthalmus_maximus
ENSDARG00000103337	rrp1	64	54.762	ENSSDUG00000000551	-	54	56.215	Seriola_dumerili
ENSDARG00000103337	rrp1	62	55.827	ENSSLDG00000002538	-	54	56.497	Seriola_lalandi_dorsalis
ENSDARG00000103337	rrp1	53	40.076	ENSSARG00000003108	-	60	40.076	Sorex_araneus
ENSDARG00000103337	rrp1	66	51.989	ENSSPAG00000005370	-	55	52.778	Stegastes_partitus
ENSDARG00000103337	rrp1	65	44.199	ENSSSCG00000021698	RRP1B	64	45.266	Sus_scrofa
ENSDARG00000103337	rrp1	53	45.093	ENSSSCG00000037061	RRP1	74	47.605	Sus_scrofa
ENSDARG00000103337	rrp1	72	52.941	ENSTNIG00000005053	rrp1	68	57.186	Tetraodon_nigroviridis
ENSDARG00000103337	rrp1	65	41.873	ENSTTRG00000000723	RRP1B	55	45.031	Tursiops_truncatus
ENSDARG00000103337	rrp1	56	45.455	ENSUMAG00000025510	RRP1B	78	44.108	Ursus_maritimus
ENSDARG00000103337	rrp1	61	49.196	ENSXETG00000013683	rrp1b	68	50.164	Xenopus_tropicalis
ENSDARG00000103337	rrp1	66	51.872	ENSXMAG00000023123	-	61	52.646	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006364	rRNA processing	21873635.	IBA	Process
GO:0006364	rRNA processing	-	IEA	Process
GO:0030687	preribosome, large subunit precursor	21873635.	IBA	Component
GO:0030688	preribosome, small subunit precursor	-	IEA	Component