EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103530 (Gene tree)
Gene ID: 503754
Gene Symbol: zgc:113102
Alias: -
Full Name: zgc:113102
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8050 bases
Position: chr3:7263209-7271258
Accession: ZDB-GENE-050306-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	1	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	2	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	3	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	4	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	5	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	6	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	7	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	8	9
ENSDARP00000138477	zf-C2H2	PF00096.26	6.1e-39	9	9
ENSDARP00000138477	zf-met	PF12874.7	4e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000164998	-	1406	XM_009299139	ENSDARP00000138477	281 (aa)	XP_009297414	Q5CZM2

Gene Model

Click here to download ENSDARG00000103530's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103530's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103530	zgc:113102	96	61.481	ENSDARG00000099890	CU207221.2	99	61.481
ENSDARG00000103530	zgc:113102	96	58.796	ENSDARG00000101044	si:ch73-138e16.6	90	58.796
ENSDARG00000103530	zgc:113102	91	61.290	ENSDARG00000110710	CU210890.1	96	61.290
ENSDARG00000103530	zgc:113102	90	61.307	ENSDARG00000088507	znf982	78	61.307
ENSDARG00000103530	zgc:113102	96	58.842	ENSDARG00000102411	CR847850.1	96	58.521
ENSDARG00000103530	zgc:113102	95	48.252	ENSDARG00000071714	znf983	72	56.618
ENSDARG00000103530	zgc:113102	97	62.500	ENSDARG00000100803	zgc:173517	95	62.500
ENSDARG00000103530	zgc:113102	97	52.747	ENSDARG00000015482	zgc:113518	78	52.747
ENSDARG00000103530	zgc:113102	99	61.340	ENSDARG00000115857	znf1001	100	61.340
ENSDARG00000103530	zgc:113102	85	58.152	ENSDARG00000103827	znf1144	98	65.882
ENSDARG00000103530	zgc:113102	93	57.511	ENSDARG00000100361	znf1174	73	57.511
ENSDARG00000103530	zgc:113102	97	63.273	ENSDARG00000105074	BX000701.2	98	63.273
ENSDARG00000103530	zgc:113102	95	61.504	ENSDARG00000053165	zgc:113377	79	61.504
ENSDARG00000103530	zgc:113102	97	54.800	ENSDARG00000091679	FO704858.1	99	54.800
ENSDARG00000103530	zgc:113102	97	61.513	ENSDARG00000098248	CABZ01081730.1	95	61.513
ENSDARG00000103530	zgc:113102	90	57.789	ENSDARG00000111899	zgc:171435	69	57.789
ENSDARG00000103530	zgc:113102	95	58.673	ENSDARG00000115326	znf1002	74	58.673
ENSDARG00000103530	zgc:113102	96	63.137	ENSDARG00000105056	znf45l	95	63.137
ENSDARG00000103530	zgc:113102	95	52.239	ENSDARG00000104065	znf1154	91	52.239
ENSDARG00000103530	zgc:113102	91	59.766	ENSDARG00000088051	AL935044.1	99	59.766
ENSDARG00000103530	zgc:113102	94	60.755	ENSDARG00000093378	si:ch211-235i11.5	80	60.755
ENSDARG00000103530	zgc:113102	94	49.621	ENSDARG00000098898	si:ch211-255f4.2	99	49.621
ENSDARG00000103530	zgc:113102	96	63.672	ENSDARG00000109703	FO834825.1	83	63.672
ENSDARG00000103530	zgc:113102	94	53.070	ENSDARG00000069869	zgc:113030	98	53.070
ENSDARG00000103530	zgc:113102	97	65.455	ENSDARG00000113011	zgc:113102	95	65.455
ENSDARG00000103530	zgc:113102	88	50.000	ENSDARG00000116814	CU570894.2	87	58.854
ENSDARG00000103530	zgc:113102	89	55.769	ENSDARG00000112141	znf1169	69	55.769
ENSDARG00000103530	zgc:113102	99	61.340	ENSDARG00000102401	znf1001	100	61.340
ENSDARG00000103530	zgc:113102	99	64.803	ENSDARG00000099731	CABZ01066719.1	99	63.487
ENSDARG00000103530	zgc:113102	97	52.227	ENSDARG00000099986	si:ch211-207i20.2	63	52.227
ENSDARG00000103530	zgc:113102	96	66.953	ENSDARG00000103777	znf1001	99	66.953
ENSDARG00000103530	zgc:113102	93	63.492	ENSDARG00000097521	si:dkey-111k8.5	89	63.492
ENSDARG00000103530	zgc:113102	94	60.755	ENSDARG00000100587	zgc:113886	88	60.159
ENSDARG00000103530	zgc:113102	100	89.324	ENSDARG00000098923	zgc:173577	100	89.324
ENSDARG00000103530	zgc:113102	99	75.194	ENSDARG00000106565	CABZ01066720.1	99	75.194
ENSDARG00000103530	zgc:113102	93	57.207	ENSDARG00000092605	znf1003	76	57.207
ENSDARG00000103530	zgc:113102	91	63.028	ENSDARG00000077712	zgc:113886	99	67.969
ENSDARG00000103530	zgc:113102	92	46.531	ENSDARG00000104904	si:ch73-221f6.1	61	46.531
ENSDARG00000103530	zgc:113102	94	57.965	ENSDARG00000078814	si:dkey-34m19.3	80	57.965
ENSDARG00000103530	zgc:113102	95	64.207	ENSDARG00000099172	BX000701.1	93	64.207
ENSDARG00000103530	zgc:113102	91	69.163	ENSDARG00000090740	zmp:0000001003	92	69.163

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103530	zgc:113102	99	44.444	ENSACIG00000007882	-	80	44.444	Amphilophus_citrinellus
ENSDARG00000103530	zgc:113102	99	46.980	ENSACIG00000008886	znf1164	80	46.980	Amphilophus_citrinellus
ENSDARG00000103530	zgc:113102	95	39.044	ENSACLG00000017449	-	60	39.044	Astatotilapia_calliptera
ENSDARG00000103530	zgc:113102	94	40.288	ENSACLG00000000521	-	98	40.288	Astatotilapia_calliptera
ENSDARG00000103530	zgc:113102	93	52.941	ENSAMXG00000041650	-	88	52.941	Astyanax_mexicanus
ENSDARG00000103530	zgc:113102	94	48.560	ENSAMXG00000043291	-	73	48.560	Astyanax_mexicanus
ENSDARG00000103530	zgc:113102	91	48.387	ENSEBUG00000015073	-	89	46.121	Eptatretus_burgeri
ENSDARG00000103530	zgc:113102	97	51.807	ENSFHEG00000018009	-	53	51.807	Fundulus_heteroclitus
ENSDARG00000103530	zgc:113102	96	51.908	ENSKMAG00000009563	-	83	51.908	Kryptolebias_marmoratus
ENSDARG00000103530	zgc:113102	94	40.449	ENSMZEG00005025568	-	79	40.136	Maylandia_zebra
ENSDARG00000103530	zgc:113102	96	40.784	ENSMZEG00005022161	-	78	40.784	Maylandia_zebra
ENSDARG00000103530	zgc:113102	93	47.619	ENSMZEG00005025729	-	89	47.619	Maylandia_zebra
ENSDARG00000103530	zgc:113102	95	54.667	ENSMZEG00005027943	-	86	51.220	Maylandia_zebra
ENSDARG00000103530	zgc:113102	95	53.299	ENSMZEG00005026470	-	58	53.299	Maylandia_zebra
ENSDARG00000103530	zgc:113102	98	41.410	ENSONIG00000013908	-	100	41.410	Oreochromis_niloticus
ENSDARG00000103530	zgc:113102	96	40.517	ENSONIG00000003363	-	100	40.517	Oreochromis_niloticus
ENSDARG00000103530	zgc:113102	92	46.465	ENSPFOG00000011766	-	100	46.465	Poecilia_formosa
ENSDARG00000103530	zgc:113102	89	40.271	ENSPNYG00000024183	zgc:173577	98	40.271	Pundamilia_nyererei
ENSDARG00000103530	zgc:113102	90	41.477	ENSSPAG00000009426	-	63	41.477	Stegastes_partitus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function