EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103553 (Gene tree)
Gene ID: 406824
Gene Symbol: sf3b3
Alias: ik:tdsubc_2b2|wu:fb81f05|xx:tdsubc_2b2|zgc:55440
Full Name: splicing factor 3b%2C subunit 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 40723 bases
Position: chr18:18547023-18587745
Accession: ZDB-GENE-040426-2901
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134109	CPSF_A	PF03178.15	4e-98	1	1
ENSDARP00000153577	CPSF_A	PF03178.15	4e-98	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000191973	-	8009	-	ENSDARP00000153577	1217 (aa)	-	Q1LVE8
ENSDART00000159274	-	4437	-	ENSDARP00000134109	1217 (aa)	-	Q1LVE8
ENSDART00000162263	-	839	-	-	- (aa)	-	-

Gene Model

Click here to download ENSDARG00000103553's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103553's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103553	sf3b3	100	93.426	ENSG00000189091	SF3B3	100	96.491	Homo_sapiens
ENSDARG00000103553	sf3b3	96	96.926	ENSAPOG00000006172	sf3b3	98	96.926	Acanthochromis_polyacanthus
ENSDARG00000103553	sf3b3	100	93.279	ENSAMEG00000002187	SF3B3	100	93.279	Ailuropoda_melanoleuca
ENSDARG00000103553	sf3b3	92	94.464	ENSACIG00000016487	sf3b3	100	94.464	Amphilophus_citrinellus
ENSDARG00000103553	sf3b3	100	96.878	ENSAOCG00000007158	sf3b3	100	96.878	Amphiprion_ocellaris
ENSDARG00000103553	sf3b3	100	96.878	ENSAPEG00000022786	sf3b3	100	96.878	Amphiprion_percula
ENSDARG00000103553	sf3b3	100	97.371	ENSATEG00000013708	sf3b3	100	97.371	Anabas_testudineus
ENSDARG00000103553	sf3b3	81	93.394	ENSAPLG00000004996	SF3B3	99	93.394	Anas_platyrhynchos
ENSDARG00000103553	sf3b3	100	93.262	ENSACAG00000001817	SF3B3	100	93.262	Anolis_carolinensis
ENSDARG00000103553	sf3b3	100	93.426	ENSANAG00000028001	SF3B3	100	93.426	Aotus_nancymaae
ENSDARG00000103553	sf3b3	96	97.182	ENSACLG00000022555	sf3b3	98	97.182	Astatotilapia_calliptera
ENSDARG00000103553	sf3b3	100	97.535	ENSAMXG00000003410	sf3b3	100	97.535	Astyanax_mexicanus
ENSDARG00000103553	sf3b3	100	93.426	ENSBTAG00000010627	SF3B3	100	93.426	Bos_taurus
ENSDARG00000103553	sf3b3	100	60.016	WBGene00019323	teg-4	100	60.016	Caenorhabditis_elegans
ENSDARG00000103553	sf3b3	100	93.426	ENSCJAG00000014773	SF3B3	99	93.426	Callithrix_jacchus
ENSDARG00000103553	sf3b3	100	93.509	ENSCAFG00000020151	SF3B3	100	93.509	Canis_familiaris
ENSDARG00000103553	sf3b3	100	93.509	ENSCAFG00020020912	SF3B3	100	93.509	Canis_lupus_dingo
ENSDARG00000103553	sf3b3	100	93.509	ENSCHIG00000019822	SF3B3	100	93.509	Capra_hircus
ENSDARG00000103553	sf3b3	100	93.426	ENSTSYG00000007910	SF3B3	100	93.426	Carlito_syrichta
ENSDARG00000103553	sf3b3	84	80.092	ENSCAPG00000001484	SF3B3	92	80.092	Cavia_aperea
ENSDARG00000103553	sf3b3	100	92.112	ENSCPOG00000000586	SF3B3	100	92.112	Cavia_porcellus
ENSDARG00000103553	sf3b3	100	93.426	ENSCCAG00000017736	SF3B3	100	93.426	Cebus_capucinus
ENSDARG00000103553	sf3b3	100	93.426	ENSCATG00000036562	SF3B3	100	93.426	Cercocebus_atys
ENSDARG00000103553	sf3b3	100	93.426	ENSCLAG00000003921	SF3B3	100	93.426	Chinchilla_lanigera
ENSDARG00000103553	sf3b3	100	93.426	ENSCSAG00000004371	SF3B3	100	93.426	Chlorocebus_sabaeus
ENSDARG00000103553	sf3b3	90	89.408	ENSCHOG00000001878	SF3B3	90	89.408	Choloepus_hoffmanni
ENSDARG00000103553	sf3b3	100	93.180	ENSCPBG00000015853	SF3B3	100	93.180	Chrysemys_picta_bellii
ENSDARG00000103553	sf3b3	100	79.803	ENSCING00000001342	-	100	79.803	Ciona_intestinalis
ENSDARG00000103553	sf3b3	99	78.325	ENSCSAVG00000011454	-	100	78.325	Ciona_savignyi
ENSDARG00000103553	sf3b3	100	89.975	ENSCANG00000042920	SF3B3	100	90.468	Colobus_angolensis_palliatus
ENSDARG00000103553	sf3b3	100	93.344	ENSCGRG00001015908	Sf3b3	100	93.344	Cricetulus_griseus_chok1gshd
ENSDARG00000103553	sf3b3	100	93.344	ENSCGRG00000010180	Sf3b3	100	93.344	Cricetulus_griseus_crigri
ENSDARG00000103553	sf3b3	82	95.309	ENSCSEG00000014192	sf3b3	99	95.309	Cynoglossus_semilaevis
ENSDARG00000103553	sf3b3	100	96.713	ENSCVAG00000010459	sf3b3	100	96.713	Cyprinodon_variegatus
ENSDARG00000103553	sf3b3	85	93.153	ENSDNOG00000043626	SF3B3	100	93.153	Dasypus_novemcinctus
ENSDARG00000103553	sf3b3	100	93.426	ENSDORG00000014176	Sf3b3	100	93.426	Dipodomys_ordii
ENSDARG00000103553	sf3b3	100	74.553	FBgn0035162	Sf3b3	100	74.553	Drosophila_melanogaster
ENSDARG00000103553	sf3b3	84	96.237	ENSETEG00000002729	SF3B3	84	96.237	Echinops_telfairi
ENSDARG00000103553	sf3b3	100	86.689	ENSEBUG00000006117	sf3b3	100	86.689	Eptatretus_burgeri
ENSDARG00000103553	sf3b3	100	93.509	ENSEASG00005013376	SF3B3	100	93.509	Equus_asinus_asinus
ENSDARG00000103553	sf3b3	100	93.509	ENSECAG00000014053	SF3B3	100	93.509	Equus_caballus
ENSDARG00000103553	sf3b3	93	92.807	ENSEEUG00000015611	SF3B3	93	92.807	Erinaceus_europaeus
ENSDARG00000103553	sf3b3	100	95.656	ENSELUG00000015417	sf3b3	100	95.656	Esox_lucius
ENSDARG00000103553	sf3b3	100	93.509	ENSFCAG00000009487	SF3B3	100	93.509	Felis_catus
ENSDARG00000103553	sf3b3	100	93.016	ENSFALG00000007372	SF3B3	100	93.016	Ficedula_albicollis
ENSDARG00000103553	sf3b3	100	93.426	ENSFDAG00000002608	SF3B3	100	93.426	Fukomys_damarensis
ENSDARG00000103553	sf3b3	100	97.288	ENSFHEG00000017824	sf3b3	100	97.288	Fundulus_heteroclitus
ENSDARG00000103553	sf3b3	100	93.350	ENSGMOG00000008139	sf3b3	100	93.350	Gadus_morhua
ENSDARG00000103553	sf3b3	100	93.262	ENSGALG00000002531	SF3B3	100	93.262	Gallus_gallus
ENSDARG00000103553	sf3b3	100	96.549	ENSGAFG00000015206	sf3b3	100	96.549	Gambusia_affinis
ENSDARG00000103553	sf3b3	100	96.798	ENSGACG00000002646	sf3b3	100	96.798	Gasterosteus_aculeatus
ENSDARG00000103553	sf3b3	96	93.254	ENSGAGG00000006746	SF3B3	97	93.254	Gopherus_agassizii
ENSDARG00000103553	sf3b3	100	93.426	ENSGGOG00000003246	SF3B3	100	93.426	Gorilla_gorilla
ENSDARG00000103553	sf3b3	92	89.375	ENSHBUG00000005960	sf3b3	100	90.357	Haplochromis_burtoni
ENSDARG00000103553	sf3b3	100	93.426	ENSHGLG00000010135	SF3B3	100	93.426	Heterocephalus_glaber_female
ENSDARG00000103553	sf3b3	100	91.322	ENSHGLG00100011148	SF3B3	100	91.322	Heterocephalus_glaber_male
ENSDARG00000103553	sf3b3	100	96.549	ENSHCOG00000011981	sf3b3	100	96.549	Hippocampus_comes
ENSDARG00000103553	sf3b3	100	97.535	ENSIPUG00000020435	sf3b3	100	97.535	Ictalurus_punctatus
ENSDARG00000103553	sf3b3	100	93.426	ENSSTOG00000007065	SF3B3	100	93.426	Ictidomys_tridecemlineatus
ENSDARG00000103553	sf3b3	100	93.426	ENSJJAG00000003948	Sf3b3	100	93.426	Jaculus_jaculus
ENSDARG00000103553	sf3b3	100	94.741	ENSKMAG00000004066	sf3b3	99	96.840	Kryptolebias_marmoratus
ENSDARG00000103553	sf3b3	100	96.960	ENSLBEG00000018302	sf3b3	100	96.960	Labrus_bergylta
ENSDARG00000103553	sf3b3	98	89.618	ENSLACG00000012501	SF3B3	99	89.618	Latimeria_chalumnae
ENSDARG00000103553	sf3b3	100	96.141	ENSLOCG00000007566	sf3b3	100	96.141	Lepisosteus_oculatus
ENSDARG00000103553	sf3b3	100	93.509	ENSLAFG00000012219	SF3B3	100	93.509	Loxodonta_africana
ENSDARG00000103553	sf3b3	100	93.426	ENSMFAG00000045487	SF3B3	100	93.426	Macaca_fascicularis
ENSDARG00000103553	sf3b3	100	93.426	ENSMMUG00000017812	SF3B3	100	93.426	Macaca_mulatta
ENSDARG00000103553	sf3b3	100	93.426	ENSMNEG00000033385	SF3B3	100	93.426	Macaca_nemestrina
ENSDARG00000103553	sf3b3	100	89.893	ENSMLEG00000043891	SF3B3	100	89.893	Mandrillus_leucophaeus
ENSDARG00000103553	sf3b3	100	97.206	ENSMAMG00000016837	sf3b3	100	97.206	Mastacembelus_armatus
ENSDARG00000103553	sf3b3	100	97.206	ENSMZEG00005010836	sf3b3	100	97.206	Maylandia_zebra
ENSDARG00000103553	sf3b3	89	94.183	ENSMZEG00005026015	sf3b3	99	94.183	Maylandia_zebra
ENSDARG00000103553	sf3b3	100	93.262	ENSMGAG00000001597	SF3B3	100	93.262	Meleagris_gallopavo
ENSDARG00000103553	sf3b3	81	76.529	ENSMAUG00000013618	Sf3b3	95	76.904	Mesocricetus_auratus
ENSDARG00000103553	sf3b3	100	92.535	ENSMICG00000001363	SF3B3	100	92.535	Microcebus_murinus
ENSDARG00000103553	sf3b3	100	93.344	ENSMOCG00000006108	Sf3b3	100	93.344	Microtus_ochrogaster
ENSDARG00000103553	sf3b3	89	94.542	ENSMMOG00000002598	sf3b3	97	94.542	Mola_mola
ENSDARG00000103553	sf3b3	100	89.409	ENSMODG00000014363	SF3B3	100	89.409	Monodelphis_domestica
ENSDARG00000103553	sf3b3	100	96.385	ENSMALG00000008014	sf3b3	100	96.385	Monopterus_albus
ENSDARG00000103553	sf3b3	100	93.344	MGP_CAROLIEiJ_G0031563	Sf3b3	100	93.344	Mus_caroli
ENSDARG00000103553	sf3b3	100	93.344	ENSMUSG00000033732	Sf3b3	100	93.344	Mus_musculus
ENSDARG00000103553	sf3b3	100	93.262	MGP_SPRETEiJ_G0032681	Sf3b3	100	93.262	Mus_spretus
ENSDARG00000103553	sf3b3	100	93.509	ENSMPUG00000010277	SF3B3	100	93.509	Mustela_putorius_furo
ENSDARG00000103553	sf3b3	100	93.344	ENSMLUG00000014607	SF3B3	100	93.344	Myotis_lucifugus
ENSDARG00000103553	sf3b3	100	93.426	ENSNGAG00000021903	Sf3b3	100	93.426	Nannospalax_galili
ENSDARG00000103553	sf3b3	83	97.222	ENSNBRG00000007197	sf3b3	99	97.222	Neolamprologus_brichardi
ENSDARG00000103553	sf3b3	100	92.036	ENSNLEG00000016127	SF3B3	100	92.036	Nomascus_leucogenys
ENSDARG00000103553	sf3b3	92	89.008	ENSMEUG00000004479	SF3B3	94	89.008	Notamacropus_eugenii
ENSDARG00000103553	sf3b3	98	90.193	ENSOPRG00000009847	SF3B3	100	90.193	Ochotona_princeps
ENSDARG00000103553	sf3b3	100	93.426	ENSODEG00000014154	SF3B3	100	93.426	Octodon_degus
ENSDARG00000103553	sf3b3	100	97.124	ENSONIG00000011198	sf3b3	100	97.124	Oreochromis_niloticus
ENSDARG00000103553	sf3b3	100	93.591	ENSOANG00000001161	-	100	93.591	Ornithorhynchus_anatinus
ENSDARG00000103553	sf3b3	100	91.372	ENSOCUG00000004139	SF3B3	100	91.372	Oryctolagus_cuniculus
ENSDARG00000103553	sf3b3	100	96.549	ENSORLG00000013472	sf3b3	100	96.549	Oryzias_latipes
ENSDARG00000103553	sf3b3	100	96.549	ENSORLG00020017473	sf3b3	100	96.549	Oryzias_latipes_hni
ENSDARG00000103553	sf3b3	100	96.713	ENSORLG00015007710	sf3b3	100	96.713	Oryzias_latipes_hsok
ENSDARG00000103553	sf3b3	100	96.220	ENSOMEG00000014483	sf3b3	100	96.220	Oryzias_melastigma
ENSDARG00000103553	sf3b3	100	93.197	ENSOGAG00000016051	SF3B3	100	93.197	Otolemur_garnettii
ENSDARG00000103553	sf3b3	100	93.279	ENSOARG00000004816	SF3B3	100	93.279	Ovis_aries
ENSDARG00000103553	sf3b3	100	93.426	ENSPPAG00000026807	SF3B3	100	93.426	Pan_paniscus
ENSDARG00000103553	sf3b3	100	93.509	ENSPPRG00000001686	SF3B3	100	93.509	Panthera_pardus
ENSDARG00000103553	sf3b3	89	90.524	ENSPTIG00000020382	SF3B3	100	90.524	Panthera_tigris_altaica
ENSDARG00000103553	sf3b3	100	93.426	ENSPTRG00000008308	SF3B3	100	93.426	Pan_troglodytes
ENSDARG00000103553	sf3b3	100	93.426	ENSPANG00000024075	SF3B3	100	93.426	Papio_anubis
ENSDARG00000103553	sf3b3	100	96.960	ENSPKIG00000002712	sf3b3	100	96.960	Paramormyrops_kingsleyae
ENSDARG00000103553	sf3b3	89	93.192	ENSPSIG00000002232	SF3B3	100	93.192	Pelodiscus_sinensis
ENSDARG00000103553	sf3b3	100	93.344	ENSPEMG00000008603	Sf3b3	100	93.344	Peromyscus_maniculatus_bairdii
ENSDARG00000103553	sf3b3	100	90.961	ENSPMAG00000001793	sf3b3	100	90.961	Petromyzon_marinus
ENSDARG00000103553	sf3b3	100	93.591	ENSPCIG00000014927	SF3B3	100	93.591	Phascolarctos_cinereus
ENSDARG00000103553	sf3b3	100	96.795	ENSPFOG00000015516	sf3b3	100	96.795	Poecilia_formosa
ENSDARG00000103553	sf3b3	100	96.795	ENSPLAG00000014330	sf3b3	100	96.795	Poecilia_latipinna
ENSDARG00000103553	sf3b3	100	96.878	ENSPMEG00000019856	sf3b3	100	96.878	Poecilia_mexicana
ENSDARG00000103553	sf3b3	81	96.850	ENSPREG00000019669	sf3b3	97	96.850	Poecilia_reticulata
ENSDARG00000103553	sf3b3	95	94.030	ENSPPYG00000007539	SF3B3	100	94.030	Pongo_abelii
ENSDARG00000103553	sf3b3	100	72.638	ENSPCAG00000002623	SF3B3	100	72.638	Procavia_capensis
ENSDARG00000103553	sf3b3	84	97.196	ENSPCOG00000026582	SF3B3	100	97.196	Propithecus_coquereli
ENSDARG00000103553	sf3b3	100	93.426	ENSPVAG00000000684	SF3B3	100	93.426	Pteropus_vampyrus
ENSDARG00000103553	sf3b3	100	97.124	ENSPNYG00000003528	sf3b3	100	97.124	Pundamilia_nyererei
ENSDARG00000103553	sf3b3	100	97.617	ENSPNAG00000015419	sf3b3	100	97.617	Pygocentrus_nattereri
ENSDARG00000103553	sf3b3	100	93.344	ENSRNOG00000017724	Sf3b3	100	93.344	Rattus_norvegicus
ENSDARG00000103553	sf3b3	100	93.426	ENSRBIG00000021904	SF3B3	100	93.426	Rhinopithecus_bieti
ENSDARG00000103553	sf3b3	100	93.426	ENSRROG00000045703	SF3B3	100	93.426	Rhinopithecus_roxellana
ENSDARG00000103553	sf3b3	100	93.426	ENSSBOG00000029156	SF3B3	100	93.426	Saimiri_boliviensis_boliviensis
ENSDARG00000103553	sf3b3	100	93.591	ENSSHAG00000000372	SF3B3	100	93.591	Sarcophilus_harrisii
ENSDARG00000103553	sf3b3	100	96.960	ENSSFOG00015012877	sf3b3	100	96.960	Scleropages_formosus
ENSDARG00000103553	sf3b3	100	96.302	ENSSMAG00000014386	sf3b3	100	96.302	Scophthalmus_maximus
ENSDARG00000103553	sf3b3	100	97.288	ENSSDUG00000021201	sf3b3	100	97.288	Seriola_dumerili
ENSDARG00000103553	sf3b3	100	97.206	ENSSLDG00000017532	sf3b3	100	97.206	Seriola_lalandi_dorsalis
ENSDARG00000103553	sf3b3	93	93.478	ENSSARG00000006917	SF3B3	93	93.478	Sorex_araneus
ENSDARG00000103553	sf3b3	100	93.098	ENSSPUG00000006253	SF3B3	100	93.098	Sphenodon_punctatus
ENSDARG00000103553	sf3b3	100	89.318	ENSSPAG00000003125	sf3b3	100	89.318	Stegastes_partitus
ENSDARG00000103553	sf3b3	100	93.509	ENSSSCG00000025323	SF3B3	100	93.509	Sus_scrofa
ENSDARG00000103553	sf3b3	100	93.186	ENSTGUG00000006082	SF3B3	100	93.186	Taeniopygia_guttata
ENSDARG00000103553	sf3b3	89	96.324	ENSTNIG00000004857	sf3b3	100	96.324	Tetraodon_nigroviridis
ENSDARG00000103553	sf3b3	93	79.225	ENSTBEG00000002946	SF3B3	100	79.225	Tupaia_belangeri
ENSDARG00000103553	sf3b3	100	92.687	ENSTTRG00000005855	SF3B3	100	92.687	Tursiops_truncatus
ENSDARG00000103553	sf3b3	100	93.509	ENSUAMG00000006780	SF3B3	100	93.509	Ursus_americanus
ENSDARG00000103553	sf3b3	100	93.509	ENSUMAG00000017757	SF3B3	100	93.509	Ursus_maritimus
ENSDARG00000103553	sf3b3	100	78.389	ENSVPAG00000003202	SF3B3	100	78.389	Vicugna_pacos
ENSDARG00000103553	sf3b3	100	93.591	ENSVVUG00000017922	SF3B3	100	93.591	Vulpes_vulpes
ENSDARG00000103553	sf3b3	100	93.098	ENSXETG00000032869	SF3B3	100	93.098	Xenopus_tropicalis
ENSDARG00000103553	sf3b3	77	96.815	ENSXCOG00000013628	sf3b3	97	96.815	Xiphophorus_couchianus
ENSDARG00000103553	sf3b3	100	96.631	ENSXMAG00000006334	sf3b3	100	96.631	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISS	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0071005	U2-type precatalytic spliceosome	-	ISS	Component