EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103594 (Gene tree)
Gene ID: 541357
Gene Symbol: npm3
Alias: cb581|fb75f02|sb:cb581|wu:fb75f02|zgc:113084
Full Name: nucleophosmin/nucleoplasmin%2C 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 10801 bases
Position: chr13:11975954-11986754
Accession: ZDB-GENE-050320-50
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000135709	Nucleoplasmin	PF03066.15	6.9e-33	1	1
ENSDARP00000132670	Nucleoplasmin	PF03066.15	9.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000157538	-	601	-	ENSDARP00000132670	123 (aa)	-	A0A0R4IGM1
ENSDART00000164214	-	3051	-	ENSDARP00000135709	163 (aa)	-	Q5BLA5

Gene Model

Click here to download ENSDARG00000103594's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103594's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103594	npm3	69	41.071	ENSDARG00000014329	npm1a	64	42.857
ENSDARG00000103594	npm3	64	39.423	ENSDARG00000053963	npm2b	58	39.252
ENSDARG00000103594	npm3	61	36.000	ENSDARG00000076391	npm2a	62	35.644

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103594	npm3	66	53.704	ENSG00000107833	NPM3	61	53.704	Homo_sapiens
ENSDARG00000103594	npm3	99	71.166	ENSAPOG00000013083	npm3	99	69.325	Acanthochromis_polyacanthus
ENSDARG00000103594	npm3	66	44.954	ENSAMEG00000019414	-	64	44.954	Ailuropoda_melanoleuca
ENSDARG00000103594	npm3	66	53.704	ENSAMEG00000017639	-	61	53.704	Ailuropoda_melanoleuca
ENSDARG00000103594	npm3	87	70.629	ENSACIG00000022586	npm3	84	69.231	Amphilophus_citrinellus
ENSDARG00000103594	npm3	99	68.519	ENSAOCG00000009376	npm3	99	67.901	Amphiprion_ocellaris
ENSDARG00000103594	npm3	99	68.519	ENSAPEG00000015863	npm3	99	67.901	Amphiprion_percula
ENSDARG00000103594	npm3	99	69.753	ENSATEG00000022752	npm3	99	69.753	Anabas_testudineus
ENSDARG00000103594	npm3	61	51.515	ENSAPLG00000010935	NPM3	64	51.515	Anas_platyrhynchos
ENSDARG00000103594	npm3	63	53.398	ENSACAG00000011936	NPM3	85	47.518	Anolis_carolinensis
ENSDARG00000103594	npm3	66	51.852	ENSANAG00000023832	-	51	51.852	Aotus_nancymaae
ENSDARG00000103594	npm3	64	52.381	ENSANAG00000023070	-	67	52.381	Aotus_nancymaae
ENSDARG00000103594	npm3	66	53.704	ENSANAG00000027082	-	61	53.704	Aotus_nancymaae
ENSDARG00000103594	npm3	85	43.478	ENSANAG00000033290	-	62	49.038	Aotus_nancymaae
ENSDARG00000103594	npm3	99	72.840	ENSACLG00000007854	npm3	99	71.605	Astatotilapia_calliptera
ENSDARG00000103594	npm3	66	89.815	ENSAMXG00000039828	npm3	56	89.908	Astyanax_mexicanus
ENSDARG00000103594	npm3	66	53.704	ENSBTAG00000016335	NPM3	61	53.704	Bos_taurus
ENSDARG00000103594	npm3	65	53.774	ENSCJAG00000017650	NPM3	60	53.774	Callithrix_jacchus
ENSDARG00000103594	npm3	66	53.704	ENSCAFG00000009919	NPM3	53	53.704	Canis_familiaris
ENSDARG00000103594	npm3	66	53.704	ENSCAFG00020009185	NPM3	61	53.704	Canis_lupus_dingo
ENSDARG00000103594	npm3	66	53.704	ENSCHIG00000024055	-	61	53.704	Capra_hircus
ENSDARG00000103594	npm3	88	31.469	ENSCHIG00000016052	-	61	40.000	Capra_hircus
ENSDARG00000103594	npm3	55	40.000	ENSCAPG00000016606	NPM3	54	42.353	Cavia_aperea
ENSDARG00000103594	npm3	66	53.704	ENSCPOG00000006301	NPM3	64	53.704	Cavia_porcellus
ENSDARG00000103594	npm3	88	47.552	ENSCCAG00000031043	-	61	53.704	Cebus_capucinus
ENSDARG00000103594	npm3	66	49.541	ENSCCAG00000029457	-	57	49.515	Cebus_capucinus
ENSDARG00000103594	npm3	87	47.183	ENSCATG00000013755	NPM3	61	53.704	Cercocebus_atys
ENSDARG00000103594	npm3	87	47.183	ENSCSAG00000005509	NPM3	61	53.704	Chlorocebus_sabaeus
ENSDARG00000103594	npm3	75	47.967	ENSCPBG00000003817	NPM3	78	47.967	Chrysemys_picta_bellii
ENSDARG00000103594	npm3	66	53.704	ENSCANG00000020300	NPM3	61	53.704	Colobus_angolensis_palliatus
ENSDARG00000103594	npm3	67	53.636	ENSCGRG00001013345	Npm3	63	53.636	Cricetulus_griseus_chok1gshd
ENSDARG00000103594	npm3	64	54.808	ENSCGRG00000015351	Npm3	64	55.340	Cricetulus_griseus_crigri
ENSDARG00000103594	npm3	99	63.314	ENSCSEG00000007944	npm3	99	63.314	Cynoglossus_semilaevis
ENSDARG00000103594	npm3	80	69.173	ENSCVAG00000003305	npm3	99	67.273	Cyprinodon_variegatus
ENSDARG00000103594	npm3	88	46.853	ENSDORG00000003491	Npm3	61	51.852	Dipodomys_ordii
ENSDARG00000103594	npm3	88	48.951	ENSETEG00000006307	NPM3	61	52.778	Echinops_telfairi
ENSDARG00000103594	npm3	66	53.704	ENSEASG00005008834	NPM3	61	53.704	Equus_asinus_asinus
ENSDARG00000103594	npm3	66	53.704	ENSECAG00000007524	NPM3	61	53.704	Equus_caballus
ENSDARG00000103594	npm3	73	81.513	ENSELUG00000021730	npm3	86	72.603	Esox_lucius
ENSDARG00000103594	npm3	66	52.778	ENSFCAG00000007178	NPM3	61	52.778	Felis_catus
ENSDARG00000103594	npm3	85	47.826	ENSFALG00000008586	NPM3	84	48.551	Ficedula_albicollis
ENSDARG00000103594	npm3	66	49.533	ENSFDAG00000016537	NPM3	70	58.904	Fukomys_damarensis
ENSDARG00000103594	npm3	82	70.896	ENSFHEG00000003983	npm3	99	65.217	Fundulus_heteroclitus
ENSDARG00000103594	npm3	91	66.216	ENSGMOG00000004317	npm3	94	66.216	Gadus_morhua
ENSDARG00000103594	npm3	64	52.885	ENSGALG00000032329	NPM3	70	52.885	Gallus_gallus
ENSDARG00000103594	npm3	79	69.531	ENSGAFG00000009135	npm3	99	67.081	Gambusia_affinis
ENSDARG00000103594	npm3	98	60.843	ENSGACG00000007294	npm3	97	60.843	Gasterosteus_aculeatus
ENSDARG00000103594	npm3	61	54.545	ENSGAGG00000004081	NPM3	57	54.545	Gopherus_agassizii
ENSDARG00000103594	npm3	66	53.704	ENSGGOG00000027500	NPM3	61	53.704	Gorilla_gorilla
ENSDARG00000103594	npm3	99	72.222	ENSHBUG00000023704	npm3	99	72.222	Haplochromis_burtoni
ENSDARG00000103594	npm3	66	54.630	ENSHGLG00000019118	NPM3	64	54.630	Heterocephalus_glaber_female
ENSDARG00000103594	npm3	62	56.436	ENSHGLG00100010926	NPM3	79	56.436	Heterocephalus_glaber_male
ENSDARG00000103594	npm3	99	63.030	ENSHCOG00000019322	npm3	98	63.636	Hippocampus_comes
ENSDARG00000103594	npm3	100	78.528	ENSIPUG00000008204	npm3	100	78.528	Ictalurus_punctatus
ENSDARG00000103594	npm3	88	48.252	ENSSTOG00000022621	NPM3	61	53.704	Ictidomys_tridecemlineatus
ENSDARG00000103594	npm3	66	54.630	ENSJJAG00000018907	Npm3	61	54.630	Jaculus_jaculus
ENSDARG00000103594	npm3	100	60.588	ENSKMAG00000020800	npm3	100	61.176	Kryptolebias_marmoratus
ENSDARG00000103594	npm3	99	66.049	ENSLBEG00000015651	npm3	79	73.228	Labrus_bergylta
ENSDARG00000103594	npm3	99	65.854	ENSLOCG00000000705	-	99	65.244	Lepisosteus_oculatus
ENSDARG00000103594	npm3	87	49.296	ENSLAFG00000023022	NPM3	67	53.704	Loxodonta_africana
ENSDARG00000103594	npm3	87	47.183	ENSMFAG00000041878	NPM3	61	53.704	Macaca_fascicularis
ENSDARG00000103594	npm3	87	47.183	ENSMMUG00000015774	NPM3	61	53.704	Macaca_mulatta
ENSDARG00000103594	npm3	87	47.183	ENSMNEG00000039999	NPM3	61	53.704	Macaca_nemestrina
ENSDARG00000103594	npm3	87	47.183	ENSMLEG00000038129	NPM3	61	53.704	Mandrillus_leucophaeus
ENSDARG00000103594	npm3	99	67.081	ENSMAMG00000002698	npm3	99	67.081	Mastacembelus_armatus
ENSDARG00000103594	npm3	99	72.222	ENSMZEG00005003091	npm3	99	70.370	Maylandia_zebra
ENSDARG00000103594	npm3	67	52.727	ENSMAUG00000015218	Npm3	63	52.727	Mesocricetus_auratus
ENSDARG00000103594	npm3	66	53.704	ENSMICG00000044119	NPM3	61	53.704	Microcebus_murinus
ENSDARG00000103594	npm3	87	46.479	ENSMOCG00000013601	Npm3	64	51.818	Microtus_ochrogaster
ENSDARG00000103594	npm3	99	73.913	ENSMMOG00000010681	npm3	99	73.913	Mola_mola
ENSDARG00000103594	npm3	88	45.455	ENSMODG00000011689	NPM3	61	50.926	Monodelphis_domestica
ENSDARG00000103594	npm3	99	64.497	ENSMALG00000016787	npm3	99	65.089	Monopterus_albus
ENSDARG00000103594	npm3	69	50.000	MGP_CAROLIEiJ_G0023020	Npm3	63	50.909	Mus_caroli
ENSDARG00000103594	npm3	69	49.107	ENSMUSG00000056209	Npm3	63	50.000	Mus_musculus
ENSDARG00000103594	npm3	88	47.552	MGP_PahariEiJ_G0014510	Npm3	63	50.909	Mus_pahari
ENSDARG00000103594	npm3	72	49.153	MGP_SPRETEiJ_G0023941	Npm3	66	50.000	Mus_spretus
ENSDARG00000103594	npm3	87	48.592	ENSMPUG00000016894	NPM3	61	53.704	Mustela_putorius_furo
ENSDARG00000103594	npm3	66	52.778	ENSMLUG00000004961	NPM3	61	52.778	Myotis_lucifugus
ENSDARG00000103594	npm3	66	51.852	ENSNGAG00000022833	-	61	51.852	Nannospalax_galili
ENSDARG00000103594	npm3	70	48.246	ENSNGAG00000000155	-	66	49.074	Nannospalax_galili
ENSDARG00000103594	npm3	62	72.277	ENSNBRG00000009627	npm3	71	72.277	Neolamprologus_brichardi
ENSDARG00000103594	npm3	87	45.070	ENSNLEG00000018637	-	60	51.887	Nomascus_leucogenys
ENSDARG00000103594	npm3	87	47.183	ENSNLEG00000029281	-	61	53.704	Nomascus_leucogenys
ENSDARG00000103594	npm3	55	43.820	ENSMEUG00000004931	-	91	43.820	Notamacropus_eugenii
ENSDARG00000103594	npm3	65	53.774	ENSMEUG00000003465	-	77	53.774	Notamacropus_eugenii
ENSDARG00000103594	npm3	60	45.361	ENSMEUG00000002619	-	100	44.444	Notamacropus_eugenii
ENSDARG00000103594	npm3	87	47.887	ENSOPRG00000009229	NPM3	61	52.778	Ochotona_princeps
ENSDARG00000103594	npm3	87	47.183	ENSODEG00000006704	NPM3	65	54.630	Octodon_degus
ENSDARG00000103594	npm3	99	65.244	ENSONIG00000009513	npm3	98	67.073	Oreochromis_niloticus
ENSDARG00000103594	npm3	87	47.887	ENSOCUG00000016819	NPM3	61	53.704	Oryctolagus_cuniculus
ENSDARG00000103594	npm3	99	68.323	ENSORLG00000008492	npm3	100	67.081	Oryzias_latipes
ENSDARG00000103594	npm3	99	68.323	ENSORLG00020002450	npm3	100	67.081	Oryzias_latipes_hni
ENSDARG00000103594	npm3	99	67.702	ENSORLG00015006856	npm3	100	67.081	Oryzias_latipes_hsok
ENSDARG00000103594	npm3	99	65.432	ENSOMEG00000002666	npm3	100	66.049	Oryzias_melastigma
ENSDARG00000103594	npm3	88	48.252	ENSOGAG00000010001	NPM3	61	53.704	Otolemur_garnettii
ENSDARG00000103594	npm3	66	53.704	ENSOARG00000016916	NPM3	61	53.704	Ovis_aries
ENSDARG00000103594	npm3	66	53.704	ENSPPAG00000040517	NPM3	61	53.704	Pan_paniscus
ENSDARG00000103594	npm3	66	52.778	ENSPPRG00000012611	-	61	52.778	Panthera_pardus
ENSDARG00000103594	npm3	66	52.778	ENSPTIG00000005390	NPM3	61	52.778	Panthera_tigris_altaica
ENSDARG00000103594	npm3	66	53.704	ENSPTRG00000002875	NPM3	61	53.704	Pan_troglodytes
ENSDARG00000103594	npm3	87	47.183	ENSPANG00000021046	NPM3	61	53.704	Papio_anubis
ENSDARG00000103594	npm3	68	68.468	ENSPKIG00000007609	npm3	60	67.857	Paramormyrops_kingsleyae
ENSDARG00000103594	npm3	100	63.415	ENSPMGG00000020204	npm3	100	63.415	Periophthalmus_magnuspinnatus
ENSDARG00000103594	npm3	69	50.893	ENSPEMG00000007731	Npm3	63	51.818	Peromyscus_maniculatus_bairdii
ENSDARG00000103594	npm3	79	71.875	ENSPFOG00000014692	npm3	99	67.702	Poecilia_formosa
ENSDARG00000103594	npm3	79	71.875	ENSPLAG00000009956	npm3	99	67.702	Poecilia_latipinna
ENSDARG00000103594	npm3	64	78.846	ENSPMEG00000011795	npm3	91	70.803	Poecilia_mexicana
ENSDARG00000103594	npm3	79	71.094	ENSPREG00000020765	npm3	99	68.323	Poecilia_reticulata
ENSDARG00000103594	npm3	87	51.049	ENSPPYG00000002589	NPM3	52	53.704	Pongo_abelii
ENSDARG00000103594	npm3	66	53.704	ENSPCOG00000014704	NPM3	61	53.704	Propithecus_coquereli
ENSDARG00000103594	npm3	87	47.887	ENSPVAG00000004038	NPM3	61	53.704	Pteropus_vampyrus
ENSDARG00000103594	npm3	99	72.222	ENSPNYG00000009300	npm3	99	69.753	Pundamilia_nyererei
ENSDARG00000103594	npm3	100	76.074	ENSPNAG00000014779	npm3	100	76.074	Pygocentrus_nattereri
ENSDARG00000103594	npm3	69	50.893	ENSRNOG00000017622	Npm3	64	51.818	Rattus_norvegicus
ENSDARG00000103594	npm3	63	54.902	ENSRBIG00000042048	-	64	55.446	Rhinopithecus_bieti
ENSDARG00000103594	npm3	66	53.704	ENSRBIG00000039086	-	61	53.704	Rhinopithecus_bieti
ENSDARG00000103594	npm3	66	53.704	ENSRROG00000029912	NPM3	61	53.704	Rhinopithecus_roxellana
ENSDARG00000103594	npm3	66	53.704	ENSSBOG00000027661	NPM3	64	53.704	Saimiri_boliviensis_boliviensis
ENSDARG00000103594	npm3	88	42.657	ENSSHAG00000008567	NPM3	62	48.148	Sarcophilus_harrisii
ENSDARG00000103594	npm3	100	68.098	ENSSFOG00015013651	npm3	100	66.871	Scleropages_formosus
ENSDARG00000103594	npm3	99	66.667	ENSSMAG00000003907	npm3	99	66.667	Scophthalmus_maximus
ENSDARG00000103594	npm3	99	75.926	ENSSDUG00000022843	npm3	99	75.926	Seriola_dumerili
ENSDARG00000103594	npm3	99	74.691	ENSSLDG00000002811	npm3	99	74.691	Seriola_lalandi_dorsalis
ENSDARG00000103594	npm3	88	44.521	ENSSPUG00000011875	NPM3	89	44.521	Sphenodon_punctatus
ENSDARG00000103594	npm3	99	70.370	ENSSPAG00000002553	npm3	99	69.753	Stegastes_partitus
ENSDARG00000103594	npm3	87	45.070	ENSSSCG00000010568	NPM3	61	51.852	Sus_scrofa
ENSDARG00000103594	npm3	68	50.450	ENSTGUG00000009948	NPM3	79	52.885	Taeniopygia_guttata
ENSDARG00000103594	npm3	99	66.667	ENSTRUG00000011661	npm3	99	64.815	Takifugu_rubripes
ENSDARG00000103594	npm3	80	69.466	ENSTNIG00000016518	npm3	72	72.000	Tetraodon_nigroviridis
ENSDARG00000103594	npm3	66	53.704	ENSVPAG00000003120	NPM3	61	53.704	Vicugna_pacos
ENSDARG00000103594	npm3	66	53.704	ENSVVUG00000000945	NPM3	53	53.704	Vulpes_vulpes
ENSDARG00000103594	npm3	88	48.148	ENSXETG00000014472	npm3	62	58.491	Xenopus_tropicalis
ENSDARG00000103594	npm3	96	67.296	ENSXCOG00000012121	npm3	98	67.073	Xiphophorus_couchianus
ENSDARG00000103594	npm3	96	67.296	ENSXMAG00000013473	npm3	98	67.073	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0015630	microtubule cytoskeleton	21873635.	IBA	Component
GO:0060271	cilium assembly	21873635.	IBA	Process