EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103672 (Gene tree)
Gene ID: 550495
Gene Symbol: cirbpa
Alias: wu:fb12a12|wu:fb16h02|wu:fb55a06|wu:fc67h01|wu:fj10g10|zgc:109887|zgc:112425
Full Name: cold inducible RNA binding protein a
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Plus strand
Length: 7704 bases
Position: chr2:58841181-58848884
Accession: ZDB-GENE-050417-329
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000134395	RRM_1	PF00076.22	9.2e-26	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000164102	-	1305	XM_017358434	ENSDARP00000134395	185 (aa)	XP_017213923	Q566W6

Gene Model

Click here to download ENSDARG00000103672's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103672's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103672	cirbpa	52	38.144	ENSDARG00000057484	srsf2a	64	41.333
ENSDARG00000103672	cirbpa	51	31.915	ENSDARG00000105293	srsf4	64	32.895
ENSDARG00000103672	cirbpa	84	47.297	ENSDARG00000032614	msi2b	75	46.479
ENSDARG00000103672	cirbpa	54	33.000	ENSDARG00000014898	ncbp2	51	31.646

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103672	cirbpa	98	58.152	ENSACIG00000016116	cirbpa	98	58.378	Amphilophus_citrinellus
ENSDARG00000103672	cirbpa	100	57.979	ENSATEG00000014985	cirbpa	100	58.824	Anabas_testudineus
ENSDARG00000103672	cirbpa	100	57.979	ENSACLG00000002094	-	100	57.447	Astatotilapia_calliptera
ENSDARG00000103672	cirbpa	100	58.549	ENSCVAG00000004853	cirbpa	100	59.259	Cyprinodon_variegatus
ENSDARG00000103672	cirbpa	78	49.342	ENSELUG00000004675	-	75	66.438	Esox_lucius
ENSDARG00000103672	cirbpa	99	54.211	ENSFHEG00000002580	cirbpa	50	71.084	Fundulus_heteroclitus
ENSDARG00000103672	cirbpa	100	57.216	ENSGAFG00000008654	cirbpa	100	58.511	Gambusia_affinis
ENSDARG00000103672	cirbpa	100	56.915	ENSHBUG00000022060	cirbpa	100	57.447	Haplochromis_burtoni
ENSDARG00000103672	cirbpa	100	60.591	ENSIPUG00000000698	cirbpb	100	61.576	Ictalurus_punctatus
ENSDARG00000103672	cirbpa	99	57.219	ENSKMAG00000005905	cirbpa	100	54.011	Kryptolebias_marmoratus
ENSDARG00000103672	cirbpa	100	51.075	ENSLBEG00000000292	cirbpa	52	67.470	Labrus_bergylta
ENSDARG00000103672	cirbpa	100	58.602	ENSMAMG00000010168	cirbpa	100	59.677	Mastacembelus_armatus
ENSDARG00000103672	cirbpa	100	56.915	ENSMZEG00005025577	-	100	57.447	Maylandia_zebra
ENSDARG00000103672	cirbpa	100	58.602	ENSMALG00000020092	cirbpa	100	59.140	Monopterus_albus
ENSDARG00000103672	cirbpa	100	56.915	ENSNBRG00000019658	cirbpa	100	57.447	Neolamprologus_brichardi
ENSDARG00000103672	cirbpa	100	56.614	ENSORLG00000015433	cirbpa	100	54.497	Oryzias_latipes
ENSDARG00000103672	cirbpa	100	56.614	ENSORLG00020016909	cirbpa	100	54.497	Oryzias_latipes_hni
ENSDARG00000103672	cirbpa	100	56.614	ENSORLG00015016636	cirbpa	100	54.497	Oryzias_latipes_hsok
ENSDARG00000103672	cirbpa	100	56.684	ENSOMEG00000021469	cirbpa	73	54.545	Oryzias_melastigma
ENSDARG00000103672	cirbpa	98	56.701	ENSPMGG00000017342	cirbpa	95	49.302	Periophthalmus_magnuspinnatus
ENSDARG00000103672	cirbpa	98	59.341	ENSPREG00000018042	cirbpa	97	58.470	Poecilia_reticulata
ENSDARG00000103672	cirbpa	100	56.915	ENSPNYG00000007198	-	100	57.447	Pundamilia_nyererei
ENSDARG00000103672	cirbpa	100	61.386	ENSPNAG00000019997	cirbpb	50	60.000	Pygocentrus_nattereri
ENSDARG00000103672	cirbpa	66	56.098	ENSSLDG00000011320	cirbpa	53	62.385	Seriola_lalandi_dorsalis
ENSDARG00000103672	cirbpa	98	52.747	ENSSPAG00000023037	cirbpa	51	72.289	Stegastes_partitus
ENSDARG00000103672	cirbpa	100	54.054	ENSTRUG00000010187	cirbpa	61	71.084	Takifugu_rubripes
ENSDARG00000103672	cirbpa	98	59.890	ENSXCOG00000008262	cirbpa	92	67.123	Xiphophorus_couchianus
ENSDARG00000103672	cirbpa	100	59.140	ENSXMAG00000019336	cirbpa	100	58.602	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0009409	response to cold	21873635.	IBA	Process
GO:0030371	translation repressor activity	21873635.	IBA	Function
GO:0045727	positive regulation of translation	21873635.	IBA	Process
GO:0048026	positive regulation of mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0070181	small ribosomal subunit rRNA binding	21873635.	IBA	Function
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component