EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103777 (Gene tree)
Gene ID: 798047
Gene Symbol: znf1001
Alias: zgc:174234
Full Name: zinc finger protein 1001
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 15041 bases
Position: chr3:7509323-7524363
Accession: ZDB-GENE-080213-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	1	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	2	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	3	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	4	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	5	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	6	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	7	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	8	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	9	10
ENSDARP00000140763	zf-C2H2	PF00096.26	1e-50	10	10
ENSDARP00000140763	zf-met	PF12874.7	2.1e-16	1	4
ENSDARP00000140763	zf-met	PF12874.7	2.1e-16	2	4
ENSDARP00000140763	zf-met	PF12874.7	2.1e-16	3	4
ENSDARP00000140763	zf-met	PF12874.7	2.1e-16	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162970	-	2306	XM_021471725	ENSDARP00000140763	294 (aa)	XP_021327400	A8KBV5

Gene Model

Click here to download ENSDARG00000103777's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103777's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103777	znf1001	98	67.014	ENSDARG00000097521	si:dkey-111k8.5	87	67.014
ENSDARG00000103777	znf1001	98	63.551	ENSDARG00000088507	znf982	83	63.551
ENSDARG00000103777	znf1001	99	66.505	ENSDARG00000106565	CABZ01066720.1	92	66.505
ENSDARG00000103777	znf1001	99	69.531	ENSDARG00000102411	CR847850.1	92	65.744
ENSDARG00000103777	znf1001	99	54.023	ENSDARG00000100882	znf1154	77	54.023
ENSDARG00000103777	znf1001	98	46.006	ENSDARG00000101093	zgc:162971	86	47.203
ENSDARG00000103777	znf1001	100	48.438	ENSDARG00000104807	si:ch73-221f6.3	64	48.438
ENSDARG00000103777	znf1001	98	65.106	ENSDARG00000088051	AL935044.1	99	65.106
ENSDARG00000103777	znf1001	99	71.707	ENSDARG00000090740	zmp:0000001003	99	71.707
ENSDARG00000103777	znf1001	98	48.432	ENSDARG00000102282	CABZ01063298.1	88	48.432
ENSDARG00000103777	znf1001	99	80.556	ENSDARG00000116814	CU570894.2	99	80.556
ENSDARG00000103777	znf1001	100	66.327	ENSDARG00000113011	zgc:113102	92	66.327
ENSDARG00000103777	znf1001	99	70.139	ENSDARG00000100803	zgc:173517	90	70.139
ENSDARG00000103777	znf1001	99	65.086	ENSDARG00000100587	zgc:113886	88	65.086
ENSDARG00000103777	znf1001	99	74.653	ENSDARG00000077712	zgc:113886	98	74.653
ENSDARG00000103777	znf1001	99	64.865	ENSDARG00000093378	si:ch211-235i11.5	84	64.865
ENSDARG00000103777	znf1001	99	42.647	ENSDARG00000014775	zgc:113220	92	47.101
ENSDARG00000103777	znf1001	98	48.432	ENSDARG00000079760	zgc:112998	85	48.432
ENSDARG00000103777	znf1001	100	49.821	ENSDARG00000105295	LO017784.1	64	49.821
ENSDARG00000103777	znf1001	99	55.479	ENSDARG00000071714	znf983	93	55.479
ENSDARG00000103777	znf1001	100	47.876	ENSDARG00000104904	si:ch73-221f6.1	61	47.876
ENSDARG00000103777	znf1001	99	63.863	ENSDARG00000099890	CU207221.2	87	67.577
ENSDARG00000103777	znf1001	99	44.178	ENSDARG00000102959	zgc:171220	94	44.178
ENSDARG00000103777	znf1001	100	69.048	ENSDARG00000099172	BX000701.1	88	69.048
ENSDARG00000103777	znf1001	98	61.500	ENSDARG00000078814	si:dkey-34m19.3	76	61.500
ENSDARG00000103777	znf1001	100	64.286	ENSDARG00000105074	BX000701.2	94	64.286
ENSDARG00000103777	znf1001	99	64.744	ENSDARG00000115857	znf1001	93	68.310
ENSDARG00000103777	znf1001	99	47.195	ENSDARG00000115737	AL954741.2	99	47.195
ENSDARG00000103777	znf1001	98	48.929	ENSDARG00000099986	si:ch211-207i20.2	62	48.929
ENSDARG00000103777	znf1001	99	60.976	ENSDARG00000100361	znf1174	72	60.976
ENSDARG00000103777	znf1001	100	45.745	ENSDARG00000090836	si:ch211-191d2.2	62	45.804
ENSDARG00000103777	znf1001	99	69.097	ENSDARG00000098248	CABZ01081730.1	90	62.457
ENSDARG00000103777	znf1001	100	44.954	ENSDARG00000098898	si:ch211-255f4.2	99	51.505
ENSDARG00000103777	znf1001	99	64.423	ENSDARG00000102401	znf1001	93	67.958
ENSDARG00000103777	znf1001	98	48.810	ENSDARG00000101562	znf1014	87	48.810
ENSDARG00000103777	znf1001	98	50.865	ENSDARG00000071790	znf1153	80	50.865
ENSDARG00000103777	znf1001	99	61.364	ENSDARG00000094736	znf1157	84	57.785
ENSDARG00000103777	znf1001	99	60.099	ENSDARG00000092605	znf1003	78	60.099
ENSDARG00000103777	znf1001	99	66.953	ENSDARG00000103530	zgc:113102	96	66.953
ENSDARG00000103777	znf1001	100	61.836	ENSDARG00000098021	si:dkey-111k8.2	85	52.941
ENSDARG00000103777	znf1001	98	57.353	ENSDARG00000101694	znf1184	82	57.353
ENSDARG00000103777	znf1001	100	59.589	ENSDARG00000091679	FO704858.1	95	59.589
ENSDARG00000103777	znf1001	99	69.792	ENSDARG00000099731	CABZ01066719.1	97	69.792
ENSDARG00000103777	znf1001	98	48.780	ENSDARG00000071589	si:dkey-253d23.2	94	48.780
ENSDARG00000103777	znf1001	100	71.080	ENSDARG00000105056	znf45l	93	71.080
ENSDARG00000103777	znf1001	99	53.767	ENSDARG00000104065	znf1154	90	53.767
ENSDARG00000103777	znf1001	99	51.969	ENSDARG00000097928	si:ch73-40a17.4	81	51.969
ENSDARG00000103777	znf1001	99	65.823	ENSDARG00000110710	CU210890.1	96	65.823
ENSDARG00000103777	znf1001	98	67.241	ENSDARG00000109703	FO834825.1	87	67.241
ENSDARG00000103777	znf1001	99	48.624	ENSDARG00000078159	zgc:175284	87	48.624
ENSDARG00000103777	znf1001	99	68.670	ENSDARG00000098923	zgc:173577	96	68.670
ENSDARG00000103777	znf1001	98	55.556	ENSDARG00000099917	znf1005	95	55.556
ENSDARG00000103777	znf1001	99	64.706	ENSDARG00000053165	zgc:113377	79	64.706
ENSDARG00000103777	znf1001	98	56.383	ENSDARG00000103954	znf1152	93	56.383

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103777	znf1001	98	49.091	ENSACIG00000000360	si:ch211-241b2.1	87	49.091	Amphilophus_citrinellus
ENSDARG00000103777	znf1001	99	46.825	ENSACIG00000008886	znf1164	90	46.825	Amphilophus_citrinellus
ENSDARG00000103777	znf1001	99	45.503	ENSACIG00000007882	-	77	45.503	Amphilophus_citrinellus
ENSDARG00000103777	znf1001	98	47.009	ENSATEG00000008667	-	79	47.009	Anabas_testudineus
ENSDARG00000103777	znf1001	98	49.143	ENSATEG00000008683	si:ch211-241b2.1	70	49.143	Anabas_testudineus
ENSDARG00000103777	znf1001	98	54.082	ENSACLG00000024670	-	77	51.923	Astatotilapia_calliptera
ENSDARG00000103777	znf1001	98	39.918	ENSACLG00000017449	-	57	39.918	Astatotilapia_calliptera
ENSDARG00000103777	znf1001	100	54.726	ENSAMXG00000029660	-	59	54.726	Astyanax_mexicanus
ENSDARG00000103777	znf1001	98	52.263	ENSAMXG00000043291	-	78	52.263	Astyanax_mexicanus
ENSDARG00000103777	znf1001	99	48.944	ENSEBUG00000015073	-	84	48.944	Eptatretus_burgeri
ENSDARG00000103777	znf1001	99	48.936	ENSFHEG00000018009	-	50	48.936	Fundulus_heteroclitus
ENSDARG00000103777	znf1001	98	44.660	ENSFHEG00000013152	-	63	44.660	Fundulus_heteroclitus
ENSDARG00000103777	znf1001	98	54.872	ENSHBUG00000018916	-	61	54.872	Haplochromis_burtoni
ENSDARG00000103777	znf1001	98	50.000	ENSKMAG00000014629	-	51	50.000	Kryptolebias_marmoratus
ENSDARG00000103777	znf1001	98	50.794	ENSKMAG00000009563	-	75	50.794	Kryptolebias_marmoratus
ENSDARG00000103777	znf1001	98	53.371	ENSMZEG00005026470	-	60	53.371	Maylandia_zebra
ENSDARG00000103777	znf1001	98	53.257	ENSMZEG00005027793	-	77	53.257	Maylandia_zebra
ENSDARG00000103777	znf1001	98	40.084	ENSMZEG00005022161	-	78	40.084	Maylandia_zebra
ENSDARG00000103777	znf1001	99	40.976	ENSMZEG00005025568	-	79	41.892	Maylandia_zebra
ENSDARG00000103777	znf1001	98	50.673	ENSMZEG00005025729	-	89	50.673	Maylandia_zebra
ENSDARG00000103777	znf1001	98	55.155	ENSMZEG00005007426	-	65	55.155	Maylandia_zebra
ENSDARG00000103777	znf1001	99	58.824	ENSMZEG00005027943	-	96	58.824	Maylandia_zebra
ENSDARG00000103777	znf1001	98	44.958	ENSMZEG00005021426	-	84	44.958	Maylandia_zebra
ENSDARG00000103777	znf1001	98	48.800	ENSMALG00000010962	-	61	48.800	Monopterus_albus
ENSDARG00000103777	znf1001	98	49.451	ENSMALG00000018074	-	58	49.451	Monopterus_albus
ENSDARG00000103777	znf1001	98	53.101	ENSNBRG00000000577	-	74	53.101	Neolamprologus_brichardi
ENSDARG00000103777	znf1001	99	40.796	ENSONIG00000003363	-	100	40.796	Oreochromis_niloticus
ENSDARG00000103777	znf1001	98	44.595	ENSONIG00000006585	-	100	36.757	Oreochromis_niloticus
ENSDARG00000103777	znf1001	98	42.731	ENSONIG00000013908	-	100	42.731	Oreochromis_niloticus
ENSDARG00000103777	znf1001	98	50.562	ENSORLG00020019341	-	53	50.562	Oryzias_latipes_hni
ENSDARG00000103777	znf1001	98	52.727	ENSPFOG00000001144	-	100	46.569	Poecilia_formosa
ENSDARG00000103777	znf1001	98	50.549	ENSPLAG00000016561	zgc:113348	90	46.591	Poecilia_latipinna
ENSDARG00000103777	znf1001	98	45.455	ENSPMEG00000007573	zgc:113343	67	45.455	Poecilia_mexicana
ENSDARG00000103777	znf1001	98	45.059	ENSPREG00000001514	zgc:113343	63	45.059	Poecilia_reticulata
ENSDARG00000103777	znf1001	99	41.264	ENSPREG00000005538	-	71	41.264	Poecilia_reticulata
ENSDARG00000103777	znf1001	98	43.373	ENSPREG00000014105	-	68	41.040	Poecilia_reticulata
ENSDARG00000103777	znf1001	98	41.485	ENSPNYG00000024183	zgc:173577	98	41.758	Pundamilia_nyererei
ENSDARG00000103777	znf1001	98	43.636	ENSSPAG00000009426	-	61	37.427	Stegastes_partitus
ENSDARG00000103777	znf1001	98	45.972	ENSSPAG00000013109	si:ch211-241b2.1	69	46.667	Stegastes_partitus
ENSDARG00000103777	znf1001	99	41.949	ENSSPAG00000006539	-	98	41.949	Stegastes_partitus
ENSDARG00000103777	znf1001	98	45.850	ENSXCOG00000017871	zgc:113343	73	45.850	Xiphophorus_couchianus
ENSDARG00000103777	znf1001	98	45.850	ENSXMAG00000019923	zgc:113343	64	45.850	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0008150	biological_process	-	ND	Process
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function