EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103845 (Gene tree)
Gene ID: 393968
Gene Symbol: zgc:55733
Alias: -
Full Name: zgc:55733
Gene Type: protein_coding
Species: Danio_rerio
Status: confidence
Strand: Minus strand
Length: 39953 bases
Position: chr7:4085115-4125067
Accession: ZDB-GENE-040426-791
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000142125	RRM_1	PF00076.22	1.2e-13	1	1
ENSDARP00000142800	RRM_1	PF00076.22	1.3e-13	1	1
ENSDARP00000134136	RRM_1	PF00076.22	1.4e-13	1	1
ENSDARP00000142065	RRM_1	PF00076.22	1.4e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000172971	-	785	-	ENSDARP00000142125	259 (aa)	-	A0A140LFU9
ENSDART00000173318	-	5336	-	ENSDARP00000142065	289 (aa)	-	A0A0R4IKH3
ENSDART00000167182	-	2513	XM_021477441	ENSDARP00000134136	289 (aa)	XP_021333116	A0A0R4IKH3
ENSDART00000173696	-	1631	XM_021477444	ENSDARP00000142800	279 (aa)	XP_021333119	A0A1D5NSI5

Gene Model

Click here to download ENSDARG00000103845's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103845's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103845	zgc:55733	96	45.683	ENSDARG00000059972	raly	86	50.000
ENSDARG00000103845	zgc:55733	88	80.252	ENSDARG00000053810	hnrnpc	82	80.233
ENSDARG00000103845	zgc:55733	67	56.322	ENSDARG00000090292	ralyl	78	56.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103845	zgc:55733	96	50.360	ENSG00000184672	RALYL	99	72.619	Homo_sapiens
ENSDARG00000103845	zgc:55733	90	82.258	ENSAPOG00000006963	hnrnpc	91	80.576	Acanthochromis_polyacanthus
ENSDARG00000103845	zgc:55733	91	80.709	ENSACIG00000000270	-	92	80.220	Amphilophus_citrinellus
ENSDARG00000103845	zgc:55733	99	71.025	ENSACIG00000016568	-	84	86.099	Amphilophus_citrinellus
ENSDARG00000103845	zgc:55733	90	76.800	ENSAOCG00000021616	-	84	78.439	Amphiprion_ocellaris
ENSDARG00000103845	zgc:55733	90	81.855	ENSAOCG00000003896	-	91	80.216	Amphiprion_ocellaris
ENSDARG00000103845	zgc:55733	90	77.600	ENSAPEG00000019962	-	85	80.682	Amphiprion_percula
ENSDARG00000103845	zgc:55733	90	81.855	ENSAPEG00000001489	-	91	80.216	Amphiprion_percula
ENSDARG00000103845	zgc:55733	93	76.336	ENSATEG00000018006	-	79	88.785	Anabas_testudineus
ENSDARG00000103845	zgc:55733	91	79.051	ENSATEG00000011734	-	92	79.412	Anabas_testudineus
ENSDARG00000103845	zgc:55733	99	46.441	ENSAPLG00000015574	RALYL	82	51.653	Anas_platyrhynchos
ENSDARG00000103845	zgc:55733	96	44.518	ENSACAG00000028464	RALYL	81	50.826	Anolis_carolinensis
ENSDARG00000103845	zgc:55733	86	54.585	ENSANAG00000023383	RALYL	93	50.566	Aotus_nancymaae
ENSDARG00000103845	zgc:55733	90	80.321	ENSACLG00000013636	-	87	80.769	Astatotilapia_calliptera
ENSDARG00000103845	zgc:55733	93	76.426	ENSACLG00000005707	-	89	80.827	Astatotilapia_calliptera
ENSDARG00000103845	zgc:55733	90	80.723	ENSACLG00000000995	-	91	79.928	Astatotilapia_calliptera
ENSDARG00000103845	zgc:55733	94	90.283	ENSAMXG00000034915	zgc:55733	91	89.960	Astyanax_mexicanus
ENSDARG00000103845	zgc:55733	76	75.243	ENSAMXG00000042946	hnrnpc	97	78.947	Astyanax_mexicanus
ENSDARG00000103845	zgc:55733	86	55.022	ENSCJAG00000000402	RALYL	93	50.943	Callithrix_jacchus
ENSDARG00000103845	zgc:55733	96	46.875	ENSCPOG00000012314	RALYL	81	52.697	Cavia_porcellus
ENSDARG00000103845	zgc:55733	86	55.022	ENSCCAG00000025003	RALYL	82	72.619	Cebus_capucinus
ENSDARG00000103845	zgc:55733	96	50.360	ENSCATG00000042145	RALYL	93	50.943	Cercocebus_atys
ENSDARG00000103845	zgc:55733	94	46.786	ENSCLAG00000005228	RALYL	93	48.188	Chinchilla_lanigera
ENSDARG00000103845	zgc:55733	81	51.528	ENSCHOG00000013228	RALYL	77	50.424	Choloepus_hoffmanni
ENSDARG00000103845	zgc:55733	96	50.360	ENSCANG00000039144	RALYL	93	50.943	Colobus_angolensis_palliatus
ENSDARG00000103845	zgc:55733	86	50.826	ENSCGRG00001009241	Ralyl	81	52.479	Cricetulus_griseus_chok1gshd
ENSDARG00000103845	zgc:55733	92	75.299	ENSCSEG00000021349	-	81	76.984	Cynoglossus_semilaevis
ENSDARG00000103845	zgc:55733	81	76.852	ENSCSEG00000019769	-	74	78.704	Cynoglossus_semilaevis
ENSDARG00000103845	zgc:55733	96	62.921	ENSCVAG00000002797	-	78	67.811	Cyprinodon_variegatus
ENSDARG00000103845	zgc:55733	90	76.800	ENSCVAG00000016981	-	83	77.122	Cyprinodon_variegatus
ENSDARG00000103845	zgc:55733	97	46.575	ENSDORG00000003721	Ralyl	93	48.375	Dipodomys_ordii
ENSDARG00000103845	zgc:55733	64	55.307	ENSETEG00000014028	RALYL	87	57.895	Echinops_telfairi
ENSDARG00000103845	zgc:55733	95	43.893	ENSEBUG00000012363	hnrnpc	67	48.018	Eptatretus_burgeri
ENSDARG00000103845	zgc:55733	95	44.000	ENSEBUG00000006049	RALYL	81	47.210	Eptatretus_burgeri
ENSDARG00000103845	zgc:55733	96	46.713	ENSEEUG00000007202	RALYL	95	48.736	Erinaceus_europaeus
ENSDARG00000103845	zgc:55733	90	80.695	ENSELUG00000007714	-	90	81.298	Esox_lucius
ENSDARG00000103845	zgc:55733	93	77.736	ENSELUG00000004132	-	91	79.478	Esox_lucius
ENSDARG00000103845	zgc:55733	99	47.458	ENSFALG00000008647	RALYL	99	57.991	Ficedula_albicollis
ENSDARG00000103845	zgc:55733	94	74.046	ENSFHEG00000003605	-	92	74.552	Fundulus_heteroclitus
ENSDARG00000103845	zgc:55733	91	72.119	ENSFHEG00000007278	-	92	69.900	Fundulus_heteroclitus
ENSDARG00000103845	zgc:55733	97	50.192	ENSGALG00000036938	RALYL	81	51.653	Gallus_gallus
ENSDARG00000103845	zgc:55733	99	72.183	ENSGAFG00000020486	-	91	75.269	Gambusia_affinis
ENSDARG00000103845	zgc:55733	99	70.408	ENSGAFG00000020992	-	78	87.500	Gambusia_affinis
ENSDARG00000103845	zgc:55733	82	73.272	ENSGACG00000018932	-	89	72.398	Gasterosteus_aculeatus
ENSDARG00000103845	zgc:55733	96	74.903	ENSGACG00000017772	-	97	78.175	Gasterosteus_aculeatus
ENSDARG00000103845	zgc:55733	96	50.360	ENSGGOG00000000841	RALYL	93	50.943	Gorilla_gorilla
ENSDARG00000103845	zgc:55733	90	81.124	ENSHBUG00000018342	-	91	80.287	Haplochromis_burtoni
ENSDARG00000103845	zgc:55733	93	76.426	ENSHBUG00000010527	-	83	80.827	Haplochromis_burtoni
ENSDARG00000103845	zgc:55733	94	46.429	ENSHGLG00000004866	RALYL	93	47.826	Heterocephalus_glaber_female
ENSDARG00000103845	zgc:55733	94	46.429	ENSHGLG00100017480	RALYL	93	47.826	Heterocephalus_glaber_male
ENSDARG00000103845	zgc:55733	90	75.290	ENSHCOG00000012333	hnrnpc	92	73.214	Hippocampus_comes
ENSDARG00000103845	zgc:55733	100	89.691	ENSIPUG00000008666	zgc:55733	100	88.660	Ictalurus_punctatus
ENSDARG00000103845	zgc:55733	92	78.400	ENSIPUG00000011271	hnrnpc	98	84.000	Ictalurus_punctatus
ENSDARG00000103845	zgc:55733	96	47.059	ENSSTOG00000012583	RALYL	95	48.014	Ictidomys_tridecemlineatus
ENSDARG00000103845	zgc:55733	90	75.600	ENSKMAG00000018265	-	83	79.545	Kryptolebias_marmoratus
ENSDARG00000103845	zgc:55733	96	78.788	ENSKMAG00000011170	-	85	80.077	Kryptolebias_marmoratus
ENSDARG00000103845	zgc:55733	97	69.565	ENSLBEG00000024418	-	77	77.155	Labrus_bergylta
ENSDARG00000103845	zgc:55733	93	78.077	ENSLBEG00000006193	-	83	80.843	Labrus_bergylta
ENSDARG00000103845	zgc:55733	94	74.330	ENSLBEG00000006979	-	75	83.105	Labrus_bergylta
ENSDARG00000103845	zgc:55733	83	76.889	ENSLOCG00000002560	hnrnpc	91	74.340	Lepisosteus_oculatus
ENSDARG00000103845	zgc:55733	96	50.360	ENSMNEG00000033288	RALYL	93	50.943	Macaca_nemestrina
ENSDARG00000103845	zgc:55733	96	50.360	ENSMLEG00000038284	RALYL	93	50.943	Mandrillus_leucophaeus
ENSDARG00000103845	zgc:55733	90	82.258	ENSMAMG00000012236	-	90	81.295	Mastacembelus_armatus
ENSDARG00000103845	zgc:55733	93	75.954	ENSMAMG00000008033	-	89	80.377	Mastacembelus_armatus
ENSDARG00000103845	zgc:55733	90	80.723	ENSMZEG00005020460	-	91	79.928	Maylandia_zebra
ENSDARG00000103845	zgc:55733	93	76.426	ENSMZEG00005024249	-	83	80.827	Maylandia_zebra
ENSDARG00000103845	zgc:55733	86	50.826	ENSMAUG00000015149	Ralyl	81	52.479	Mesocricetus_auratus
ENSDARG00000103845	zgc:55733	96	48.375	ENSMICG00000005558	RALYL	85	72.619	Microcebus_murinus
ENSDARG00000103845	zgc:55733	96	47.241	ENSMOCG00000017371	Ralyl	81	52.282	Microtus_ochrogaster
ENSDARG00000103845	zgc:55733	94	79.693	ENSMMOG00000021465	-	92	81.226	Mola_mola
ENSDARG00000103845	zgc:55733	99	69.858	ENSMMOG00000019520	-	83	88.785	Mola_mola
ENSDARG00000103845	zgc:55733	91	73.663	ENSMALG00000007520	-	91	73.846	Monopterus_albus
ENSDARG00000103845	zgc:55733	93	77.606	ENSMALG00000014623	-	83	79.008	Monopterus_albus
ENSDARG00000103845	zgc:55733	86	50.413	ENSMUSG00000039717	Ralyl	99	71.429	Mus_musculus
ENSDARG00000103845	zgc:55733	86	52.066	ENSMPUG00000010724	RALYL	93	47.292	Mustela_putorius_furo
ENSDARG00000103845	zgc:55733	98	45.238	ENSNGAG00000013375	Ralyl	93	47.653	Nannospalax_galili
ENSDARG00000103845	zgc:55733	99	71.181	ENSNBRG00000015676	-	76	89.352	Neolamprologus_brichardi
ENSDARG00000103845	zgc:55733	91	81.102	ENSNBRG00000004912	-	93	82.511	Neolamprologus_brichardi
ENSDARG00000103845	zgc:55733	96	50.360	ENSNLEG00000002702	RALYL	89	50.943	Nomascus_leucogenys
ENSDARG00000103845	zgc:55733	66	49.215	ENSOPRG00000013650	-	98	48.691	Ochotona_princeps
ENSDARG00000103845	zgc:55733	96	47.222	ENSODEG00000001012	RALYL	93	48.188	Octodon_degus
ENSDARG00000103845	zgc:55733	90	81.928	ENSONIG00000007859	-	93	78.889	Oreochromis_niloticus
ENSDARG00000103845	zgc:55733	93	76.046	ENSONIG00000018350	-	83	80.451	Oreochromis_niloticus
ENSDARG00000103845	zgc:55733	90	73.930	ENSORLG00000003144	-	82	77.491	Oryzias_latipes
ENSDARG00000103845	zgc:55733	90	70.000	ENSORLG00000009999	-	85	69.732	Oryzias_latipes
ENSDARG00000103845	zgc:55733	90	69.600	ENSORLG00020018228	hnrnpc	85	69.349	Oryzias_latipes_hni
ENSDARG00000103845	zgc:55733	90	70.000	ENSORLG00015019755	-	85	69.732	Oryzias_latipes_hsok
ENSDARG00000103845	zgc:55733	90	73.930	ENSORLG00015009460	-	82	77.491	Oryzias_latipes_hsok
ENSDARG00000103845	zgc:55733	90	71.200	ENSOMEG00000020488	-	85	70.881	Oryzias_melastigma
ENSDARG00000103845	zgc:55733	90	76.400	ENSOMEG00000022665	-	83	79.924	Oryzias_melastigma
ENSDARG00000103845	zgc:55733	96	50.360	ENSPPAG00000038705	RALYL	93	50.943	Pan_paniscus
ENSDARG00000103845	zgc:55733	96	50.000	ENSPPRG00000018612	RALYL	93	50.187	Panthera_pardus
ENSDARG00000103845	zgc:55733	96	50.000	ENSPTIG00000020331	RALYL	93	50.187	Panthera_tigris_altaica
ENSDARG00000103845	zgc:55733	96	50.360	ENSPTRG00000020381	RALYL	93	50.943	Pan_troglodytes
ENSDARG00000103845	zgc:55733	96	50.360	ENSPANG00000029305	RALYL	93	50.943	Papio_anubis
ENSDARG00000103845	zgc:55733	86	84.348	ENSPKIG00000022837	-	89	80.496	Paramormyrops_kingsleyae
ENSDARG00000103845	zgc:55733	93	77.528	ENSPKIG00000008592	-	91	80.556	Paramormyrops_kingsleyae
ENSDARG00000103845	zgc:55733	99	45.763	ENSPSIG00000011135	RALYL	81	51.240	Pelodiscus_sinensis
ENSDARG00000103845	zgc:55733	82	86.636	ENSPMGG00000013144	-	83	86.636	Periophthalmus_magnuspinnatus
ENSDARG00000103845	zgc:55733	98	68.100	ENSPMGG00000017774	-	90	68.545	Periophthalmus_magnuspinnatus
ENSDARG00000103845	zgc:55733	86	50.826	ENSPEMG00000016447	Ralyl	81	52.479	Peromyscus_maniculatus_bairdii
ENSDARG00000103845	zgc:55733	81	54.348	ENSPMAG00000002407	RALYL	99	54.348	Petromyzon_marinus
ENSDARG00000103845	zgc:55733	94	76.806	ENSPFOG00000001583	-	91	75.714	Poecilia_formosa
ENSDARG00000103845	zgc:55733	90	75.100	ENSPFOG00000002643	-	84	77.903	Poecilia_formosa
ENSDARG00000103845	zgc:55733	94	76.336	ENSPLAG00000015305	-	91	75.269	Poecilia_latipinna
ENSDARG00000103845	zgc:55733	90	75.100	ENSPLAG00000000061	-	82	79.087	Poecilia_latipinna
ENSDARG00000103845	zgc:55733	90	74.699	ENSPMEG00000016524	-	82	77.186	Poecilia_mexicana
ENSDARG00000103845	zgc:55733	94	77.099	ENSPMEG00000004802	-	91	75.627	Poecilia_mexicana
ENSDARG00000103845	zgc:55733	90	74.297	ENSPREG00000001852	-	88	78.327	Poecilia_reticulata
ENSDARG00000103845	zgc:55733	90	76.800	ENSPREG00000007928	-	91	75.269	Poecilia_reticulata
ENSDARG00000103845	zgc:55733	86	44.595	ENSPPYG00000018710	-	83	73.469	Pongo_abelii
ENSDARG00000103845	zgc:55733	94	45.993	ENSPVAG00000010821	RALYL	81	51.452	Pteropus_vampyrus
ENSDARG00000103845	zgc:55733	99	70.447	ENSPNYG00000003747	-	89	80.827	Pundamilia_nyererei
ENSDARG00000103845	zgc:55733	91	79.921	ENSPNYG00000020293	-	87	81.102	Pundamilia_nyererei
ENSDARG00000103845	zgc:55733	94	84.766	ENSPNAG00000019200	zgc:55733	100	82.450	Pygocentrus_nattereri
ENSDARG00000103845	zgc:55733	89	81.092	ENSPNAG00000015686	hnrnpc	89	81.395	Pygocentrus_nattereri
ENSDARG00000103845	zgc:55733	96	50.360	ENSRROG00000023925	RALYL	87	70.930	Rhinopithecus_roxellana
ENSDARG00000103845	zgc:55733	91	77.011	ENSSFOG00015012924	-	81	96.250	Scleropages_formosus
ENSDARG00000103845	zgc:55733	99	72.281	ENSSFOG00015012015	-	82	88.372	Scleropages_formosus
ENSDARG00000103845	zgc:55733	92	75.875	ENSSMAG00000011147	-	79	87.963	Scophthalmus_maximus
ENSDARG00000103845	zgc:55733	85	84.956	ENSSMAG00000013592	-	91	77.580	Scophthalmus_maximus
ENSDARG00000103845	zgc:55733	93	77.606	ENSSDUG00000006730	-	84	82.061	Seriola_dumerili
ENSDARG00000103845	zgc:55733	94	83.012	ENSSDUG00000001723	-	91	81.655	Seriola_dumerili
ENSDARG00000103845	zgc:55733	93	77.606	ENSSLDG00000007474	-	91	81.679	Seriola_lalandi_dorsalis
ENSDARG00000103845	zgc:55733	94	83.398	ENSSLDG00000007454	-	85	83.012	Seriola_lalandi_dorsalis
ENSDARG00000103845	zgc:55733	70	77.174	ENSSARG00000002374	RALYL	95	40.221	Sorex_araneus
ENSDARG00000103845	zgc:55733	94	82.308	ENSSPAG00000023204	-	91	82.374	Stegastes_partitus
ENSDARG00000103845	zgc:55733	99	73.482	ENSSPAG00000013996	-	83	80.989	Stegastes_partitus
ENSDARG00000103845	zgc:55733	99	47.119	ENSTGUG00000011689	RALYL	81	52.966	Taeniopygia_guttata
ENSDARG00000103845	zgc:55733	80	80.095	ENSTRUG00000020158	-	83	78.400	Takifugu_rubripes
ENSDARG00000103845	zgc:55733	78	77.934	ENSTNIG00000007427	-	84	74.806	Tetraodon_nigroviridis
ENSDARG00000103845	zgc:55733	91	73.387	ENSTNIG00000000334	-	94	70.866	Tetraodon_nigroviridis
ENSDARG00000103845	zgc:55733	86	45.714	ENSTBEG00000005551	RALYL	94	46.058	Tupaia_belangeri
ENSDARG00000103845	zgc:55733	86	49.793	ENSTTRG00000015762	RALYL	93	45.387	Tursiops_truncatus
ENSDARG00000103845	zgc:55733	86	50.000	ENSVPAG00000008501	RALYL	94	46.617	Vicugna_pacos
ENSDARG00000103845	zgc:55733	59	86.420	ENSXCOG00000019434	-	93	74.886	Xiphophorus_couchianus
ENSDARG00000103845	zgc:55733	95	70.342	ENSXCOG00000006552	-	81	71.315	Xiphophorus_couchianus
ENSDARG00000103845	zgc:55733	90	74.297	ENSXMAG00000022849	-	86	78.327	Xiphophorus_maculatus
ENSDARG00000103845	zgc:55733	94	75.573	ENSXMAG00000009333	-	91	74.552	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0019012	virion	-	IEA	Component
GO:0019013	viral nucleocapsid	-	IEA	Component