EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103851 (Gene tree)
Gene ID: 100149391
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 37484 bases
Position: chr6:18714213-18751696
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000132648	Ago_hook	PF10427.9	7e-05	1	1
ENSDARP00000141129	Ago_hook	PF10427.9	0.00011	1	1
ENSDARP00000141129	RRM_1	PF00076.22	0.00012	1	1
ENSDARP00000132648	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000170998	-	9286	-	ENSDARP00000132648	1610 (aa)	-	A0A0R4ICB1
ENSDART00000171537	-	5484	XM_021477075	ENSDARP00000141129	1534 (aa)	XP_021329763	A0A0R4IVQ1

Gene Model

Click here to download ENSDARG00000103851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103851	tnrc6c2	99	57.282	ENSDARG00000076847	tnrc6c1	99	55.054
ENSDARG00000103851	tnrc6c2	81	37.706	ENSDARG00000079688	tnrc6a	72	36.636

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103851	tnrc6c2	100	56.973	ENSAOCG00000017648	tnrc6c2	91	58.470	Amphiprion_ocellaris
ENSDARG00000103851	tnrc6c2	58	72.044	ENSATEG00000003656	tnrc6c2	100	58.069	Anabas_testudineus
ENSDARG00000103851	tnrc6c2	100	55.483	ENSACLG00000006469	tnrc6c2	93	57.119	Astatotilapia_calliptera
ENSDARG00000103851	tnrc6c2	100	69.968	ENSAMXG00000009579	tnrc6c2	99	70.122	Astyanax_mexicanus
ENSDARG00000103851	tnrc6c2	91	54.858	ENSELUG00000007206	tnrc6c2	99	53.985	Esox_lucius
ENSDARG00000103851	tnrc6c2	99	48.348	ENSELUG00000008149	-	99	50.423	Esox_lucius
ENSDARG00000103851	tnrc6c2	100	56.825	ENSFHEG00000003901	tnrc6c2	100	58.094	Fundulus_heteroclitus
ENSDARG00000103851	tnrc6c2	100	54.655	ENSGACG00000019401	tnrc6c2	94	55.063	Gasterosteus_aculeatus
ENSDARG00000103851	tnrc6c2	100	55.602	ENSHBUG00000018310	tnrc6c2	93	57.231	Haplochromis_burtoni
ENSDARG00000103851	tnrc6c2	100	57.134	ENSHCOG00000017802	tnrc6c2	88	57.355	Hippocampus_comes
ENSDARG00000103851	tnrc6c2	100	60.949	ENSIPUG00000022767	tnrc6c2	99	61.037	Ictalurus_punctatus
ENSDARG00000103851	tnrc6c2	100	57.621	ENSMAMG00000001718	tnrc6c2	100	58.781	Mastacembelus_armatus
ENSDARG00000103851	tnrc6c2	100	55.542	ENSMZEG00005023905	tnrc6c2	93	57.175	Maylandia_zebra
ENSDARG00000103851	tnrc6c2	100	57.369	ENSMALG00000020932	tnrc6c2	100	58.914	Monopterus_albus
ENSDARG00000103851	tnrc6c2	100	55.788	ENSNBRG00000000452	tnrc6c2	100	58.784	Neolamprologus_brichardi
ENSDARG00000103851	tnrc6c2	91	58.344	ENSONIG00000018123	tnrc6c2	99	59.625	Oreochromis_niloticus
ENSDARG00000103851	tnrc6c2	100	56.661	ENSORLG00000003327	tnrc6c2	91	56.592	Oryzias_latipes
ENSDARG00000103851	tnrc6c2	100	56.566	ENSORLG00020010730	tnrc6c2	91	56.649	Oryzias_latipes_hni
ENSDARG00000103851	tnrc6c2	100	56.669	ENSORLG00015009232	tnrc6c2	91	56.567	Oryzias_latipes_hsok
ENSDARG00000103851	tnrc6c2	100	56.548	ENSOMEG00000017952	tnrc6c2	91	56.913	Oryzias_melastigma
ENSDARG00000103851	tnrc6c2	99	50.184	ENSPFOG00000011590	tnrc6c2	53	64.017	Poecilia_formosa
ENSDARG00000103851	tnrc6c2	100	56.079	ENSPLAG00000006992	tnrc6c2	100	57.458	Poecilia_latipinna
ENSDARG00000103851	tnrc6c2	100	57.211	ENSPMEG00000012946	tnrc6c2	100	57.015	Poecilia_mexicana
ENSDARG00000103851	tnrc6c2	100	55.669	ENSPREG00000015823	tnrc6c2	100	57.428	Poecilia_reticulata
ENSDARG00000103851	tnrc6c2	100	55.621	ENSPNYG00000002582	tnrc6c2	100	57.879	Pundamilia_nyererei
ENSDARG00000103851	tnrc6c2	100	69.877	ENSPNAG00000026838	tnrc6c2	99	70.718	Pygocentrus_nattereri
ENSDARG00000103851	tnrc6c2	100	55.162	ENSSMAG00000015145	tnrc6c2	100	58.705	Scophthalmus_maximus
ENSDARG00000103851	tnrc6c2	100	56.998	ENSSDUG00000020741	tnrc6c2	100	59.545	Seriola_dumerili
ENSDARG00000103851	tnrc6c2	100	56.758	ENSSLDG00000002077	tnrc6c2	100	59.425	Seriola_lalandi_dorsalis
ENSDARG00000103851	tnrc6c2	100	56.965	ENSSPAG00000013052	tnrc6c2	91	57.978	Stegastes_partitus
ENSDARG00000103851	tnrc6c2	93	68.556	ENSTNIG00000004178	tnrc6c2	96	69.878	Tetraodon_nigroviridis
ENSDARG00000103851	tnrc6c2	100	55.720	ENSXCOG00000013252	tnrc6c2	100	57.313	Xiphophorus_couchianus
ENSDARG00000103851	tnrc6c2	100	56.973	ENSXMAG00000006739	tnrc6c2	100	58.827	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0035068	micro-ribonucleoprotein complex	21873635.	IBA	Component
GO:0035195	gene silencing by miRNA	21873635.	IBA	Process
GO:0035278	miRNA mediated inhibition of translation	-	IEA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	21873635.	IBA	Process