EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103856 (Gene tree)
Gene ID: 553325
Gene Symbol: ptcd3
Alias: fa08d08|wu:fa08d08|zgc:123014
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 24073
Position: chr14: 16126983-16151055
Accession: ZDB-GENE-030131-6849
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	preZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116
28381614	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition	ZGA & embryo	2017 Apr 5	Despic V	DOI: 10.1101/gr.215954.116

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000167072	-	821	-	-	- (aa)	-	-
ENSDART00000161150	-	936	-	-	- (aa)	-	-
ENSDART00000162431	-	2221	-	ENSDARP00000135512	667 (aa)	-	A0A0R4IKN8

Gene Model

Click here to download ENSDARG00000103856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103856's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103856	ptcd3	95	31.269	FBgn0033816	CG4679	96	31.424	Drosophila_melanogaster
ENSDARG00000103856	ptcd3	93	52.251	ENSG00000132300	PTCD3	91	51.905	Homo_sapiens
ENSDARG00000103856	ptcd3	93	50.801	ENSMUSG00000063884	Ptcd3	91	50.553	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005739	mitochondrion	-	ISS	Component
GO:0005840	ribosome	-	IEA	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0019843	rRNA binding	-	IEA	Function
GO:0019843	rRNA binding	-	ISS	Function
GO:0032543	mitochondrial translation	-	IEA	Process
GO:0032543	mitochondrial translation	-	ISS	Process
GO:0043024	ribosomal small subunit binding	-	IEA	Function
GO:0043024	ribosomal small subunit binding	-	ISS	Function