EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103893 (Gene tree)
Gene ID: 323700
Gene Symbol: srsf2b
Alias: wu:fc07d01|zgc:55876|zgc:77420
Full Name: serine/arginine-rich splicing factor 2b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 8295 bases
Position: chr3:60594138-60602432
Accession: ZDB-GENE-030131-2420
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131299	RRM_1	PF00076.22	8.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000163235	-	3553	-	ENSDARP00000131299	220 (aa)	-	Q6NZT9

Gene Model

Click here to download ENSDARG00000103893's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103893's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103893	srsf2b	83	38.119	ENSDARG00000035325	srsf7a	81	37.500
ENSDARG00000103893	srsf2b	52	88.596	ENSDARG00000057484	srsf2a	85	96.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103893	srsf2b	71	60.870	ENSSSCG00000012212	-	51	76.000	Sus_scrofa

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0043484	regulation of RNA splicing	-	IEA	Process
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process