EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103956 (Gene tree)
Gene ID: 100148319
Gene Symbol: si:dkey-17o15.2
Alias: fc79c08|wu:fc79c08
Full Name: si:dkey-17o15.2
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9833 bases
Position: chr5:37277242-37287074
Accession: ZDB-GENE-030131-4187
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129968	FYTT	PF07078.11	4.2e-16	1	2
ENSDARP00000129968	FYTT	PF07078.11	4.2e-16	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000164011	-	813	-	-	- (aa)	-	-
ENSDART00000159402	-	1805	XM_001923764	ENSDARP00000129968	364 (aa)	XP_001923799	A0A0R4IAX2

Gene Model

Click here to download ENSDARG00000103956's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103956's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103956	si:dkey-17o15.2	66	46.875	ENSIPUG00000021589	si:dkey-17o15.2	76	44.737	Ictalurus_punctatus
ENSDARG00000103956	si:dkey-17o15.2	70	39.041	ENSPKIG00000005558	si:dkey-17o15.2	91	38.745	Paramormyrops_kingsleyae
ENSDARG00000103956	si:dkey-17o15.2	70	45.420	ENSPNAG00000024354	si:dkey-17o15.2	76	45.076	Pygocentrus_nattereri

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	-	IEA	Function
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0006406	mRNA export from nucleus	-	IEA	Process
GO:0016607	nuclear speck	21873635.	IBA	Component