EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000103979 (Gene tree)
Gene ID: 30248
Gene Symbol: calr3a
Alias: calr|zgc:85636
Full Name: calreticulin 3a
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 6663 bases
Position: chr22:4762478-4769140
Accession: ZDB-GENE-000208-17
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130666	Calreticulin	PF00262.18	8.4e-84	1	2
ENSDARP00000130666	Calreticulin	PF00262.18	8.4e-84	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165235	-	1712	-	ENSDARP00000130666	418 (aa)	-	Q6PE26

Gene Model

Click here to download ENSDARG00000103979's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre04141	Protein processing in endoplasmic reticulum	KEGG
dre04145	Phagosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000103979's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000103979	calr3a	80	36.591	ENSDARG00000009315	clgn	65	36.098
ENSDARG00000103979	calr3a	80	88.323	ENSDARG00000102808	calr3b	87	85.083
ENSDARG00000103979	calr3a	80	38.346	ENSDARG00000037488	canx	66	38.346
ENSDARG00000103979	calr3a	88	74.659	ENSDARG00000076290	calr	86	74.652

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000103979	calr3a	85	75.843	ENSAMXG00000018577	-	84	75.843	Astyanax_mexicanus
ENSDARG00000103979	calr3a	83	76.879	ENSCAFG00000017093	CALR	89	74.515	Canis_familiaris
ENSDARG00000103979	calr3a	87	76.164	ENSCPBG00000023916	-	85	81.529	Chrysemys_picta_bellii
ENSDARG00000103979	calr3a	93	65.553	FBgn0005585	Calr	94	65.803	Drosophila_melanogaster
ENSDARG00000103979	calr3a	78	32.323	FBgn0264077	Cnx14D	61	32.323	Drosophila_melanogaster
ENSDARG00000103979	calr3a	87	74.659	ENSEBUG00000008568	calr3a	84	73.407	Eptatretus_burgeri
ENSDARG00000103979	calr3a	86	67.127	ENSELUG00000008294	-	86	67.127	Esox_lucius
ENSDARG00000103979	calr3a	90	69.921	ENSFHEG00000000123	-	85	69.529	Fundulus_heteroclitus
ENSDARG00000103979	calr3a	86	75.487	ENSMAMG00000003716	-	83	75.487	Mastacembelus_armatus
ENSDARG00000103979	calr3a	86	73.961	ENSMMOG00000020031	-	82	73.961	Mola_mola
ENSDARG00000103979	calr3a	83	76.590	ENSMLUG00000012776	-	85	74.930	Myotis_lucifugus
ENSDARG00000103979	calr3a	86	64.624	ENSORLG00000017171	-	83	64.345	Oryzias_latipes
ENSDARG00000103979	calr3a	86	75.487	ENSOMEG00000010424	-	84	75.487	Oryzias_melastigma
ENSDARG00000103979	calr3a	79	80.000	ENSPSIG00000012928	-	85	80.240	Pelodiscus_sinensis
ENSDARG00000103979	calr3a	80	37.343	ENSPSIG00000009344	-	62	38.287	Pelodiscus_sinensis
ENSDARG00000103979	calr3a	81	37.965	ENSPSIG00000003895	-	69	37.717	Pelodiscus_sinensis
ENSDARG00000103979	calr3a	86	74.309	ENSPNAG00000016813	-	86	74.309	Pygocentrus_nattereri
ENSDARG00000103979	calr3a	90	82.133	ENSSMAG00000005047	calr3a	83	74.033	Scophthalmus_maximus
ENSDARG00000103979	calr3a	80	37.469	ENSSDUG00000002378	-	56	37.108	Seriola_dumerili
ENSDARG00000103979	calr3a	84	35.941	ENSSLDG00000020527	-	70	35.941	Seriola_lalandi_dorsalis
ENSDARG00000103979	calr3a	80	37.778	ENSTRUG00000003449	-	55	37.778	Takifugu_rubripes
ENSDARG00000103979	calr3a	84	76.705	ENSTRUG00000004597	-	82	76.705	Takifugu_rubripes
ENSDARG00000103979	calr3a	86	75.346	ENSXETG00000007937	calr	87	75.556	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005509	calcium ion binding	-	IEA	Function
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0006457	protein folding	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0051082	unfolded protein binding	-	IEA	Function