EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000104288 (Gene tree)
Gene ID: 557052
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 20879 bases
Position: chr2:22531185-22552063
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000137345	ResIII	PF04851.15	8e-14	1	1
ENSDARP00000137345	DEAD	PF00270.29	1.1e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162295	-	493	-	-	- (aa)	-	-
ENSDART00000171959	-	3475	XM_009298501	ENSDARP00000137345	1084 (aa)	XP_009296776	A0A0R4IN50

Gene Model

Click here to download ENSDARG00000104288's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000104288's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000104288	hfm1	69	34.215	ENSDARG00000086678	ascc3	85	31.985

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000104288	hfm1	77	66.238	ENSG00000162669	HFM1	60	66.238	Homo_sapiens
ENSDARG00000104288	hfm1	81	74.083	ENSAPOG00000005304	hfm1	100	74.083	Acanthochromis_polyacanthus
ENSDARG00000104288	hfm1	99	54.553	ENSAMEG00000000432	HFM1	79	54.553	Ailuropoda_melanoleuca
ENSDARG00000104288	hfm1	75	71.446	ENSACIG00000021553	hfm1	77	71.446	Amphilophus_citrinellus
ENSDARG00000104288	hfm1	81	74.632	ENSAOCG00000022839	hfm1	100	74.632	Amphiprion_ocellaris
ENSDARG00000104288	hfm1	81	74.387	ENSAPEG00000014316	hfm1	100	74.387	Amphiprion_percula
ENSDARG00000104288	hfm1	78	72.486	ENSATEG00000019181	hfm1	71	71.552	Anabas_testudineus
ENSDARG00000104288	hfm1	76	67.019	ENSAPLG00000013639	HFM1	59	67.019	Anas_platyrhynchos
ENSDARG00000104288	hfm1	98	54.513	ENSANAG00000029513	HFM1	79	54.513	Aotus_nancymaae
ENSDARG00000104288	hfm1	76	71.205	ENSACLG00000009033	hfm1	98	71.205	Astatotilapia_calliptera
ENSDARG00000104288	hfm1	99	68.359	ENSAMXG00000006108	hfm1	75	68.359	Astyanax_mexicanus
ENSDARG00000104288	hfm1	96	56.036	ENSBTAG00000020856	HFM1	76	56.036	Bos_taurus
ENSDARG00000104288	hfm1	99	54.108	ENSCJAG00000001843	HFM1	79	54.108	Callithrix_jacchus
ENSDARG00000104288	hfm1	99	54.490	ENSCAFG00000020187	HFM1	79	54.490	Canis_familiaris
ENSDARG00000104288	hfm1	96	55.767	ENSTSYG00000014250	HFM1	77	55.767	Carlito_syrichta
ENSDARG00000104288	hfm1	97	54.717	ENSCPOG00000007421	HFM1	79	54.807	Cavia_porcellus
ENSDARG00000104288	hfm1	99	54.482	ENSCCAG00000033206	HFM1	79	54.482	Cebus_capucinus
ENSDARG00000104288	hfm1	99	53.846	ENSCATG00000030987	HFM1	79	53.846	Cercocebus_atys
ENSDARG00000104288	hfm1	97	55.313	ENSCLAG00000005173	HFM1	75	55.313	Chinchilla_lanigera
ENSDARG00000104288	hfm1	63	53.706	ENSCSAVG00000005094	-	100	53.706	Ciona_savignyi
ENSDARG00000104288	hfm1	96	52.166	ENSCGRG00001016995	Hfm1	76	52.166	Cricetulus_griseus_chok1gshd
ENSDARG00000104288	hfm1	96	54.389	ENSCGRG00000017181	Hfm1	76	54.389	Cricetulus_griseus_crigri
ENSDARG00000104288	hfm1	76	72.575	ENSCSEG00000017659	hfm1	77	72.575	Cynoglossus_semilaevis
ENSDARG00000104288	hfm1	64	72.433	ENSCVAG00000005075	hfm1	86	72.433	Cyprinodon_variegatus
ENSDARG00000104288	hfm1	76	64.994	ENSDNOG00000004776	HFM1	56	64.994	Dasypus_novemcinctus
ENSDARG00000104288	hfm1	78	63.564	ENSDORG00000014661	Hfm1	61	63.564	Dipodomys_ordii
ENSDARG00000104288	hfm1	72	67.209	ENSEASG00005015424	HFM1	80	67.209	Equus_asinus_asinus
ENSDARG00000104288	hfm1	96	56.040	ENSECAG00000024039	HFM1	74	56.040	Equus_caballus
ENSDARG00000104288	hfm1	82	75.152	ENSELUG00000018944	hfm1	100	75.152	Esox_lucius
ENSDARG00000104288	hfm1	96	56.014	ENSFCAG00000029116	HFM1	76	56.014	Felis_catus
ENSDARG00000104288	hfm1	77	66.937	ENSFALG00000001781	HFM1	60	66.937	Ficedula_albicollis
ENSDARG00000104288	hfm1	78	65.167	ENSFDAG00000020816	HFM1	58	65.167	Fukomys_damarensis
ENSDARG00000104288	hfm1	76	69.575	ENSGMOG00000017436	hfm1	88	69.575	Gadus_morhua
ENSDARG00000104288	hfm1	82	71.921	ENSGAFG00000018093	hfm1	100	71.921	Gambusia_affinis
ENSDARG00000104288	hfm1	76	69.617	ENSGACG00000015686	hfm1	86	69.617	Gasterosteus_aculeatus
ENSDARG00000104288	hfm1	78	65.893	ENSGGOG00000038524	HFM1	60	65.893	Gorilla_gorilla
ENSDARG00000104288	hfm1	75	71.584	ENSHBUG00000007309	hfm1	79	71.584	Haplochromis_burtoni
ENSDARG00000104288	hfm1	74	71.840	ENSHCOG00000019632	hfm1	97	71.840	Hippocampus_comes
ENSDARG00000104288	hfm1	82	80.048	ENSIPUG00000017020	hfm1	99	80.048	Ictalurus_punctatus
ENSDARG00000104288	hfm1	80	63.063	ENSJJAG00000017198	Hfm1	63	63.063	Jaculus_jaculus
ENSDARG00000104288	hfm1	74	72.384	ENSKMAG00000002282	hfm1	85	72.384	Kryptolebias_marmoratus
ENSDARG00000104288	hfm1	76	73.881	ENSLBEG00000006759	hfm1	97	73.881	Labrus_bergylta
ENSDARG00000104288	hfm1	76	69.294	ENSLACG00000010698	HFM1	80	69.529	Latimeria_chalumnae
ENSDARG00000104288	hfm1	81	70.857	ENSLOCG00000004931	hfm1	83	70.857	Lepisosteus_oculatus
ENSDARG00000104288	hfm1	62	67.529	ENSLAFG00000015903	-	93	67.529	Loxodonta_africana
ENSDARG00000104288	hfm1	99	52.406	ENSMFAG00000003649	HFM1	79	52.406	Macaca_fascicularis
ENSDARG00000104288	hfm1	99	54.196	ENSMMUG00000006819	HFM1	79	54.196	Macaca_mulatta
ENSDARG00000104288	hfm1	75	73.366	ENSMAMG00000004623	hfm1	97	73.366	Mastacembelus_armatus
ENSDARG00000104288	hfm1	76	71.205	ENSMZEG00005004679	hfm1	98	71.205	Maylandia_zebra
ENSDARG00000104288	hfm1	69	66.667	ENSMGAG00000008437	HFM1	95	66.667	Meleagris_gallopavo
ENSDARG00000104288	hfm1	96	53.791	ENSMAUG00000018858	Hfm1	76	53.791	Mesocricetus_auratus
ENSDARG00000104288	hfm1	96	54.809	ENSMICG00000037935	HFM1	76	54.809	Microcebus_murinus
ENSDARG00000104288	hfm1	96	54.504	ENSMOCG00000014812	Hfm1	76	54.504	Microtus_ochrogaster
ENSDARG00000104288	hfm1	82	74.213	ENSMMOG00000006148	hfm1	99	74.213	Mola_mola
ENSDARG00000104288	hfm1	81	74.572	ENSMALG00000002401	hfm1	100	74.572	Monopterus_albus
ENSDARG00000104288	hfm1	88	62.025	MGP_CAROLIEiJ_G0027496	Hfm1	72	62.025	Mus_caroli
ENSDARG00000104288	hfm1	76	65.513	ENSMUSG00000043410	Hfm1	58	65.513	Mus_musculus
ENSDARG00000104288	hfm1	96	55.074	MGP_PahariEiJ_G0017268	Hfm1	100	36.085	Mus_pahari
ENSDARG00000104288	hfm1	98	53.737	MGP_SPRETEiJ_G0028495	Hfm1	100	36.235	Mus_spretus
ENSDARG00000104288	hfm1	96	56.424	ENSMPUG00000004594	HFM1	74	56.424	Mustela_putorius_furo
ENSDARG00000104288	hfm1	99	54.593	ENSMLUG00000010200	HFM1	79	54.593	Myotis_lucifugus
ENSDARG00000104288	hfm1	74	71.535	ENSNBRG00000002910	hfm1	97	71.535	Neolamprologus_brichardi
ENSDARG00000104288	hfm1	96	54.291	ENSNLEG00000010285	HFM1	76	54.291	Nomascus_leucogenys
ENSDARG00000104288	hfm1	66	66.071	ENSMEUG00000015788	HFM1	50	66.071	Notamacropus_eugenii
ENSDARG00000104288	hfm1	76	60.932	ENSOPRG00000013916	HFM1	59	60.932	Ochotona_princeps
ENSDARG00000104288	hfm1	81	69.663	ENSONIG00000010590	hfm1	85	69.663	Oreochromis_niloticus
ENSDARG00000104288	hfm1	73	71.734	ENSORLG00000026844	hfm1	99	71.734	Oryzias_latipes
ENSDARG00000104288	hfm1	96	52.316	ENSORLG00020002951	hfm1	86	52.446	Oryzias_latipes_hni
ENSDARG00000104288	hfm1	97	60.672	ENSOMEG00000016474	hfm1	75	60.672	Oryzias_melastigma
ENSDARG00000104288	hfm1	96	56.357	ENSOGAG00000032369	HFM1	89	56.357	Otolemur_garnettii
ENSDARG00000104288	hfm1	96	56.369	ENSOARG00000015812	HFM1	76	56.369	Ovis_aries
ENSDARG00000104288	hfm1	77	66.472	ENSPPAG00000024582	HFM1	65	66.472	Pan_paniscus
ENSDARG00000104288	hfm1	96	55.885	ENSPPRG00000003270	HFM1	76	55.885	Panthera_pardus
ENSDARG00000104288	hfm1	96	56.014	ENSPTIG00000018881	HFM1	76	56.014	Panthera_tigris_altaica
ENSDARG00000104288	hfm1	77	66.472	ENSPTRG00000000948	HFM1	60	66.472	Pan_troglodytes
ENSDARG00000104288	hfm1	99	53.759	ENSPANG00000009838	HFM1	79	53.759	Papio_anubis
ENSDARG00000104288	hfm1	76	73.841	ENSPKIG00000003810	hfm1	96	74.570	Paramormyrops_kingsleyae
ENSDARG00000104288	hfm1	75	72.963	ENSPMGG00000011059	hfm1	100	72.963	Periophthalmus_magnuspinnatus
ENSDARG00000104288	hfm1	96	54.083	ENSPEMG00000022852	Hfm1	76	54.083	Peromyscus_maniculatus_bairdii
ENSDARG00000104288	hfm1	77	66.822	ENSPCIG00000014233	HFM1	58	66.822	Phascolarctos_cinereus
ENSDARG00000104288	hfm1	75	71.947	ENSPFOG00000017194	hfm1	79	71.947	Poecilia_formosa
ENSDARG00000104288	hfm1	75	71.807	ENSPLAG00000000571	hfm1	76	71.807	Poecilia_latipinna
ENSDARG00000104288	hfm1	75	71.928	ENSPMEG00000019475	hfm1	76	71.928	Poecilia_mexicana
ENSDARG00000104288	hfm1	82	72.010	ENSPREG00000007803	hfm1	100	72.010	Poecilia_reticulata
ENSDARG00000104288	hfm1	96	55.204	ENSPPYG00000001163	HFM1	76	55.204	Pongo_abelii
ENSDARG00000104288	hfm1	77	61.072	ENSPVAG00000009713	HFM1	61	61.072	Pteropus_vampyrus
ENSDARG00000104288	hfm1	76	71.084	ENSPNYG00000001795	hfm1	98	71.084	Pundamilia_nyererei
ENSDARG00000104288	hfm1	98	69.325	ENSPNAG00000010865	hfm1	100	69.137	Pygocentrus_nattereri
ENSDARG00000104288	hfm1	96	54.472	ENSRNOG00000023299	Hfm1	76	54.472	Rattus_norvegicus
ENSDARG00000104288	hfm1	99	54.458	ENSRROG00000045569	HFM1	79	54.458	Rhinopithecus_roxellana
ENSDARG00000104288	hfm1	99	54.426	ENSSBOG00000027456	HFM1	80	54.426	Saimiri_boliviensis_boliviensis
ENSDARG00000104288	hfm1	55	68.455	ENSSHAG00000014616	-	70	68.455	Sarcophilus_harrisii
ENSDARG00000104288	hfm1	99	64.510	ENSSFOG00015020129	hfm1	74	64.510	Scleropages_formosus
ENSDARG00000104288	hfm1	75	72.608	ENSSMAG00000006907	hfm1	82	72.608	Scophthalmus_maximus
ENSDARG00000104288	hfm1	80	74.568	ENSSDUG00000011424	hfm1	99	74.568	Seriola_dumerili
ENSDARG00000104288	hfm1	87	74.539	ENSSLDG00000016386	hfm1	100	74.539	Seriola_lalandi_dorsalis
ENSDARG00000104288	hfm1	81	74.142	ENSSPAG00000001023	hfm1	100	74.142	Stegastes_partitus
ENSDARG00000104288	hfm1	96	56.486	ENSSSCG00000006912	HFM1	80	56.486	Sus_scrofa
ENSDARG00000104288	hfm1	75	67.594	ENSTGUG00000006172	HFM1	86	67.594	Taeniopygia_guttata
ENSDARG00000104288	hfm1	77	66.084	ENSTTRG00000013933	HFM1	61	66.084	Tursiops_truncatus
ENSDARG00000104288	hfm1	77	64.452	ENSVPAG00000011331	HFM1	60	64.452	Vicugna_pacos
ENSDARG00000104288	hfm1	72	66.958	ENSVVUG00000020760	HFM1	80	66.958	Vulpes_vulpes
ENSDARG00000104288	hfm1	84	71.463	ENSXMAG00000004178	hfm1	100	71.463	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function