EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000104485 (Gene tree)
Gene ID: 327438
Gene Symbol: si:ch1073-224n8.1
Alias: fi11a05|wu:fi11a05
Full Name: si:ch1073-224n8.1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 6578 bases
Position: chr5:37504309-37510886
Accession: ZDB-GENE-030131-5649
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000140978	zf-C2H2	PF00096.26	9.5e-21	1	5
ENSDARP00000140978	zf-C2H2	PF00096.26	9.5e-21	2	5
ENSDARP00000140978	zf-C2H2	PF00096.26	9.5e-21	3	5
ENSDARP00000140978	zf-C2H2	PF00096.26	9.5e-21	4	5
ENSDARP00000140978	zf-C2H2	PF00096.26	9.5e-21	5	5
ENSDARP00000140978	zf-met	PF12874.7	5.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165465	-	4162	XM_001921528	ENSDARP00000140978	573 (aa)	XP_001921563	A0A0R4IX00

Gene Model

Click here to download ENSDARG00000104485's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000104485's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000104485	si:ch1073-224n8.1	94	66.667	ENSAMXG00000035286	si:ch1073-224n8.1	84	88.785	Astyanax_mexicanus
ENSDARG00000104485	si:ch1073-224n8.1	100	60.473	ENSIPUG00000019839	si:ch1073-224n8.1	100	61.149	Ictalurus_punctatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function