EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000104587 (Gene tree)
Gene ID: 449670
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 59129 bases
Position: chr3:12128117-12187245
Accession: ZDB-GENE-061110-91
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000153671	MMR_HSR1	PF01926.23	4e-08	1	1
ENSDARP00000138572	MMR_HSR1	PF01926.23	4.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165131	-	5730	XM_009299804	ENSDARP00000138572	470 (aa)	XP_009298079	A0A0R4IRI3
ENSDART00000189553	-	5766	-	ENSDARP00000153671	482 (aa)	-	A0AUR2

Gene Model

Click here to download ENSDARG00000104587's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000104587's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000104587	srl	87	32.763	ENSDARG00000040362	ehd2b	73	32.763
ENSDARG00000104587	srl	62	35.593	ENSDARG00000035137	ehd2a	53	35.593
ENSDARG00000104587	srl	85	31.500	ENSDARG00000054302	ehd4	63	31.500
ENSDARG00000104587	srl	79	32.976	ENSDARG00000007869	ehd3	69	32.987
ENSDARG00000104587	srl	83	30.250	ENSDARG00000098853	ehd1a	70	31.186
ENSDARG00000104587	srl	81	79.427	ENSDARG00000112959	CABZ01072309.1	100	79.427
ENSDARG00000104587	srl	82	31.688	ENSDARG00000014793	ehd1b	70	31.688

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000104587	srl	94	84.842	ENSG00000185739	SRL	99	84.884	Homo_sapiens
ENSDARG00000104587	srl	100	91.083	ENSAPOG00000018093	srl	99	93.424	Acanthochromis_polyacanthus
ENSDARG00000104587	srl	94	78.733	ENSAPOG00000012432	SRL	98	78.733	Acanthochromis_polyacanthus
ENSDARG00000104587	srl	97	82.751	ENSAMEG00000010862	SRL	52	82.751	Ailuropoda_melanoleuca
ENSDARG00000104587	srl	95	76.734	ENSACIG00000015419	SRL	99	76.734	Amphilophus_citrinellus
ENSDARG00000104587	srl	96	92.683	ENSACIG00000015799	srl	100	92.683	Amphilophus_citrinellus
ENSDARG00000104587	srl	94	78.781	ENSAOCG00000017049	SRL	96	79.007	Amphiprion_ocellaris
ENSDARG00000104587	srl	92	94.009	ENSAOCG00000007574	srl	100	94.009	Amphiprion_ocellaris
ENSDARG00000104587	srl	100	91.511	ENSAPEG00000006911	srl	100	91.511	Amphiprion_percula
ENSDARG00000104587	srl	94	74.434	ENSAPEG00000006533	SRL	96	75.395	Amphiprion_percula
ENSDARG00000104587	srl	100	92.133	ENSATEG00000024315	srl	100	92.133	Anabas_testudineus
ENSDARG00000104587	srl	94	76.923	ENSATEG00000009643	SRL	52	77.582	Anabas_testudineus
ENSDARG00000104587	srl	94	85.651	ENSACAG00000016380	SRL	88	82.816	Anolis_carolinensis
ENSDARG00000104587	srl	100	91.494	ENSACLG00000027685	srl	100	91.494	Astatotilapia_calliptera
ENSDARG00000104587	srl	95	75.217	ENSACLG00000024674	SRL	54	78.750	Astatotilapia_calliptera
ENSDARG00000104587	srl	100	94.191	ENSAMXG00000018789	srl	92	94.191	Astyanax_mexicanus
ENSDARG00000104587	srl	89	76.611	ENSAMXG00000038693	SRL	100	72.848	Astyanax_mexicanus
ENSDARG00000104587	srl	96	84.479	ENSBTAG00000001078	SRL	57	84.479	Bos_taurus
ENSDARG00000104587	srl	94	84.842	ENSCJAG00000019750	SRL	100	81.184	Callithrix_jacchus
ENSDARG00000104587	srl	98	81.957	ENSCAFG00000019233	SRL	86	81.957	Canis_familiaris
ENSDARG00000104587	srl	96	83.556	ENSCAFG00020025024	SRL	55	83.556	Canis_lupus_dingo
ENSDARG00000104587	srl	99	82.441	ENSCHIG00000017927	SRL	56	84.479	Capra_hircus
ENSDARG00000104587	srl	100	82.030	ENSTSYG00000007919	SRL	99	86.047	Carlito_syrichta
ENSDARG00000104587	srl	97	83.480	ENSCPOG00000012643	SRL	100	81.780	Cavia_porcellus
ENSDARG00000104587	srl	94	79.412	ENSCCAG00000032646	SRL	100	86.016	Cebus_capucinus
ENSDARG00000104587	srl	98	82.135	ENSCATG00000032227	-	100	81.184	Cercocebus_atys
ENSDARG00000104587	srl	96	83.556	ENSCLAG00000016242	SRL	100	81.780	Chinchilla_lanigera
ENSDARG00000104587	srl	82	87.273	ENSCHOG00000001618	SRL	52	87.273	Choloepus_hoffmanni
ENSDARG00000104587	srl	96	87.824	ENSCPBG00000026371	SRL	99	82.845	Chrysemys_picta_bellii
ENSDARG00000104587	srl	94	59.050	ENSCING00000005231	-	98	59.050	Ciona_intestinalis
ENSDARG00000104587	srl	94	84.842	ENSCANG00000035872	SRL	99	84.884	Colobus_angolensis_palliatus
ENSDARG00000104587	srl	98	82.789	ENSCGRG00001016630	Srl	99	82.090	Cricetulus_griseus_chok1gshd
ENSDARG00000104587	srl	98	82.789	ENSCGRG00000005458	Srl	99	82.090	Cricetulus_griseus_crigri
ENSDARG00000104587	srl	100	91.720	ENSCSEG00000016151	srl	100	91.720	Cynoglossus_semilaevis
ENSDARG00000104587	srl	99	72.650	ENSCSEG00000011866	SRL	94	72.863	Cynoglossus_semilaevis
ENSDARG00000104587	srl	96	77.273	ENSCVAG00000022465	SRL	61	77.273	Cyprinodon_variegatus
ENSDARG00000104587	srl	100	90.249	ENSCVAG00000003513	srl	100	91.097	Cyprinodon_variegatus
ENSDARG00000104587	srl	96	84.292	ENSDNOG00000011643	SRL	54	84.292	Dasypus_novemcinctus
ENSDARG00000104587	srl	97	83.921	ENSDORG00000014807	Srl	100	82.030	Dipodomys_ordii
ENSDARG00000104587	srl	79	66.578	ENSEBUG00000015937	srl	94	66.578	Eptatretus_burgeri
ENSDARG00000104587	srl	96	84.257	ENSEASG00005000942	SRL	54	84.257	Equus_asinus_asinus
ENSDARG00000104587	srl	99	81.992	ENSECAG00000024219	SRL	99	81.992	Equus_caballus
ENSDARG00000104587	srl	100	86.037	ENSELUG00000015616	srl	100	86.037	Esox_lucius
ENSDARG00000104587	srl	100	81.818	ENSFCAG00000022075	SRL	100	81.818	Felis_catus
ENSDARG00000104587	srl	94	83.864	ENSFALG00000004328	SRL	63	83.864	Ficedula_albicollis
ENSDARG00000104587	srl	97	83.921	ENSFDAG00000006199	SRL	100	82.415	Fukomys_damarensis
ENSDARG00000104587	srl	100	90.062	ENSFHEG00000011239	srl	100	90.062	Fundulus_heteroclitus
ENSDARG00000104587	srl	100	74.380	ENSFHEG00000011854	SRL	99	77.629	Fundulus_heteroclitus
ENSDARG00000104587	srl	94	90.728	ENSGMOG00000014954	srl	99	90.728	Gadus_morhua
ENSDARG00000104587	srl	99	81.741	ENSGALG00000038884	SRL	99	81.741	Gallus_gallus
ENSDARG00000104587	srl	100	90.683	ENSGAFG00000000010	srl	100	90.683	Gambusia_affinis
ENSDARG00000104587	srl	95	78.523	ENSGAFG00000016984	SRL	99	78.523	Gambusia_affinis
ENSDARG00000104587	srl	94	93.407	ENSGACG00000011332	srl	100	93.407	Gasterosteus_aculeatus
ENSDARG00000104587	srl	98	82.135	ENSGGOG00000011312	-	100	81.184	Gorilla_gorilla
ENSDARG00000104587	srl	95	75.217	ENSHBUG00000015710	SRL	57	75.217	Haplochromis_burtoni
ENSDARG00000104587	srl	100	91.494	ENSHBUG00000007581	srl	100	91.494	Haplochromis_burtoni
ENSDARG00000104587	srl	96	84.222	ENSHGLG00000015271	SRL	100	82.415	Heterocephalus_glaber_female
ENSDARG00000104587	srl	96	84.222	ENSHGLG00100019378	SRL	100	82.415	Heterocephalus_glaber_male
ENSDARG00000104587	srl	99	90.833	ENSHCOG00000008687	srl	98	93.018	Hippocampus_comes
ENSDARG00000104587	srl	94	76.211	ENSHCOG00000001012	SRL	50	76.211	Hippocampus_comes
ENSDARG00000104587	srl	93	70.413	ENSIPUG00000011609	SRL	95	70.413	Ictalurus_punctatus
ENSDARG00000104587	srl	100	93.168	ENSIPUG00000012513	srl	100	93.168	Ictalurus_punctatus
ENSDARG00000104587	srl	98	82.789	ENSSTOG00000021151	-	100	81.568	Ictidomys_tridecemlineatus
ENSDARG00000104587	srl	100	82.203	ENSJJAG00000016400	Srl	100	82.203	Jaculus_jaculus
ENSDARG00000104587	srl	98	90.698	ENSKMAG00000014115	srl	93	93.587	Kryptolebias_marmoratus
ENSDARG00000104587	srl	94	78.912	ENSKMAG00000019537	SRL	100	78.912	Kryptolebias_marmoratus
ENSDARG00000104587	srl	100	90.870	ENSLBEG00000026643	srl	100	90.870	Labrus_bergylta
ENSDARG00000104587	srl	94	77.828	ENSLBEG00000013811	SRL	95	78.054	Labrus_bergylta
ENSDARG00000104587	srl	100	83.644	ENSLACG00000002825	SRL	99	84.922	Latimeria_chalumnae
ENSDARG00000104587	srl	99	88.675	ENSLOCG00000002644	srl	99	88.675	Lepisosteus_oculatus
ENSDARG00000104587	srl	98	82.789	ENSLAFG00000006329	SRL	52	82.789	Loxodonta_africana
ENSDARG00000104587	srl	91	84.884	ENSMFAG00000037383	SRL	99	84.884	Macaca_fascicularis
ENSDARG00000104587	srl	98	82.135	ENSMNEG00000019236	-	93	84.842	Macaca_nemestrina
ENSDARG00000104587	srl	94	77.828	ENSMLEG00000032156	SRL	100	74.630	Mandrillus_leucophaeus
ENSDARG00000104587	srl	94	76.652	ENSMAMG00000013756	SRL	53	76.432	Mastacembelus_armatus
ENSDARG00000104587	srl	99	90.426	ENSMAMG00000023322	srl	99	90.426	Mastacembelus_armatus
ENSDARG00000104587	srl	100	91.494	ENSMZEG00005004548	srl	100	91.494	Maylandia_zebra
ENSDARG00000104587	srl	95	75.435	ENSMZEG00005004010	SRL	58	75.435	Maylandia_zebra
ENSDARG00000104587	srl	97	82.198	ENSMGAG00000009342	SRL	95	85.146	Meleagris_gallopavo
ENSDARG00000104587	srl	97	83.260	ENSMICG00000032307	SRL	100	81.395	Microcebus_murinus
ENSDARG00000104587	srl	100	81.568	ENSMOCG00000008208	Srl	100	81.568	Microtus_ochrogaster
ENSDARG00000104587	srl	94	92.342	ENSMMOG00000013970	srl	99	92.342	Mola_mola
ENSDARG00000104587	srl	94	76.096	ENSMMOG00000021572	SRL	99	76.096	Mola_mola
ENSDARG00000104587	srl	96	84.889	ENSMODG00000016380	-	51	84.889	Monodelphis_domestica
ENSDARG00000104587	srl	89	78.520	ENSMALG00000000670	SRL	98	78.520	Monopterus_albus
ENSDARG00000104587	srl	97	91.410	ENSMALG00000005039	srl	98	92.551	Monopterus_albus
ENSDARG00000104587	srl	98	83.007	MGP_CAROLIEiJ_G0020400	Srl	100	82.415	Mus_caroli
ENSDARG00000104587	srl	98	83.007	ENSMUSG00000022519	Srl	100	82.415	Mus_musculus
ENSDARG00000104587	srl	94	85.520	MGP_PahariEiJ_G0016108	Srl	50	82.789	Mus_pahari
ENSDARG00000104587	srl	98	83.007	MGP_SPRETEiJ_G0021294	Srl	100	82.415	Mus_spretus
ENSDARG00000104587	srl	96	83.628	ENSMPUG00000015025	SRL	55	83.628	Mustela_putorius_furo
ENSDARG00000104587	srl	99	82.581	ENSMLUG00000030733	SRL	58	82.581	Myotis_lucifugus
ENSDARG00000104587	srl	96	84.222	ENSNGAG00000019741	Srl	100	82.203	Nannospalax_galili
ENSDARG00000104587	srl	100	91.277	ENSNBRG00000023775	srl	100	91.277	Neolamprologus_brichardi
ENSDARG00000104587	srl	95	75.435	ENSNBRG00000002422	SRL	56	77.083	Neolamprologus_brichardi
ENSDARG00000104587	srl	94	79.186	ENSNLEG00000029051	SRL	100	75.687	Nomascus_leucogenys
ENSDARG00000104587	srl	96	78.222	ENSOPRG00000000477	-	53	78.222	Ochotona_princeps
ENSDARG00000104587	srl	94	85.294	ENSODEG00000013256	SRL	100	81.568	Octodon_degus
ENSDARG00000104587	srl	100	91.286	ENSONIG00000005192	srl	100	91.286	Oreochromis_niloticus
ENSDARG00000104587	srl	98	82.353	ENSOCUG00000025140	SRL	51	82.353	Oryctolagus_cuniculus
ENSDARG00000104587	srl	100	89.834	ENSORLG00000008291	srl	97	89.834	Oryzias_latipes
ENSDARG00000104587	srl	94	77.405	ENSORLG00000015064	SRL	97	77.405	Oryzias_latipes
ENSDARG00000104587	srl	94	77.629	ENSORLG00020018173	SRL	97	77.629	Oryzias_latipes_hni
ENSDARG00000104587	srl	100	89.834	ENSORLG00020019784	srl	85	89.834	Oryzias_latipes_hni
ENSDARG00000104587	srl	94	77.252	ENSORLG00015019063	SRL	97	77.252	Oryzias_latipes_hsok
ENSDARG00000104587	srl	100	89.419	ENSORLG00015009342	srl	97	89.419	Oryzias_latipes_hsok
ENSDARG00000104587	srl	100	89.419	ENSOMEG00000010006	srl	98	92.727	Oryzias_melastigma
ENSDARG00000104587	srl	94	74.781	ENSOMEG00000005682	SRL	53	75.274	Oryzias_melastigma
ENSDARG00000104587	srl	98	81.957	ENSOGAG00000029266	SRL	56	81.957	Otolemur_garnettii
ENSDARG00000104587	srl	99	83.011	ENSOARG00000003074	SRL	58	83.011	Ovis_aries
ENSDARG00000104587	srl	98	81.917	ENSPPAG00000024919	-	99	84.884	Pan_paniscus
ENSDARG00000104587	srl	100	81.818	ENSPPRG00000010274	SRL	99	85.116	Panthera_pardus
ENSDARG00000104587	srl	100	81.818	ENSPTIG00000015162	SRL	99	85.116	Panthera_tigris_altaica
ENSDARG00000104587	srl	98	81.917	ENSPTRG00000007712	SRL	99	84.884	Pan_troglodytes
ENSDARG00000104587	srl	97	82.969	ENSPANG00000013804	SRL	98	82.969	Papio_anubis
ENSDARG00000104587	srl	100	80.679	ENSPKIG00000024974	SRL	94	80.679	Paramormyrops_kingsleyae
ENSDARG00000104587	srl	100	91.134	ENSPKIG00000006405	srl	100	91.134	Paramormyrops_kingsleyae
ENSDARG00000104587	srl	97	83.297	ENSPSIG00000008586	SRL	51	83.297	Pelodiscus_sinensis
ENSDARG00000104587	srl	94	76.298	ENSPMGG00000023505	-	100	76.298	Periophthalmus_magnuspinnatus
ENSDARG00000104587	srl	98	90.476	ENSPMGG00000021081	srl	99	90.476	Periophthalmus_magnuspinnatus
ENSDARG00000104587	srl	96	83.778	ENSPEMG00000015842	Srl	100	81.992	Peromyscus_maniculatus_bairdii
ENSDARG00000104587	srl	89	68.276	ENSPMAG00000004786	srl	99	68.276	Petromyzon_marinus
ENSDARG00000104587	srl	96	84.444	ENSPCIG00000012128	SRL	98	84.444	Phascolarctos_cinereus
ENSDARG00000104587	srl	100	90.476	ENSPFOG00000011408	srl	98	89.958	Poecilia_formosa
ENSDARG00000104587	srl	95	76.734	ENSPLAG00000002932	SRL	99	76.734	Poecilia_latipinna
ENSDARG00000104587	srl	98	90.239	ENSPLAG00000008017	srl	100	90.239	Poecilia_latipinna
ENSDARG00000104587	srl	97	74.786	ENSPMEG00000005890	SRL	61	74.786	Poecilia_mexicana
ENSDARG00000104587	srl	100	90.234	ENSPMEG00000006745	srl	100	90.239	Poecilia_mexicana
ENSDARG00000104587	srl	100	90.683	ENSPREG00000007751	srl	99	92.601	Poecilia_reticulata
ENSDARG00000104587	srl	96	77.506	ENSPREG00000000315	SRL	100	77.506	Poecilia_reticulata
ENSDARG00000104587	srl	89	86.158	ENSPPYG00000007053	SRL	98	86.158	Pongo_abelii
ENSDARG00000104587	srl	96	84.035	ENSPCAG00000003378	-	52	82.789	Procavia_capensis
ENSDARG00000104587	srl	97	83.260	ENSPCOG00000023135	SRL	99	85.349	Propithecus_coquereli
ENSDARG00000104587	srl	96	84.513	ENSPVAG00000006586	SRL	55	84.513	Pteropus_vampyrus
ENSDARG00000104587	srl	95	75.435	ENSPNYG00000003423	SRL	57	75.435	Pundamilia_nyererei
ENSDARG00000104587	srl	100	91.701	ENSPNYG00000001200	srl	100	91.701	Pundamilia_nyererei
ENSDARG00000104587	srl	100	93.361	ENSPNAG00000023106	srl	100	93.361	Pygocentrus_nattereri
ENSDARG00000104587	srl	94	75.737	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSDARG00000104587	srl	98	83.007	ENSRNOG00000005269	Srl	51	83.007	Rattus_norvegicus
ENSDARG00000104587	srl	98	82.135	ENSRBIG00000042358	SRL	51	82.135	Rhinopithecus_bieti
ENSDARG00000104587	srl	94	84.842	ENSSBOG00000029273	SRL	100	81.184	Saimiri_boliviensis_boliviensis
ENSDARG00000104587	srl	96	84.667	ENSSHAG00000011715	-	51	84.667	Sarcophilus_harrisii
ENSDARG00000104587	srl	94	79.505	ENSSFOG00015021327	SRL	50	79.111	Scleropages_formosus
ENSDARG00000104587	srl	100	90.702	ENSSFOG00015009773	srl	100	90.702	Scleropages_formosus
ENSDARG00000104587	srl	100	89.855	ENSSMAG00000016274	srl	98	92.601	Scophthalmus_maximus
ENSDARG00000104587	srl	94	76.484	ENSSMAG00000002232	SRL	50	76.484	Scophthalmus_maximus
ENSDARG00000104587	srl	94	93.694	ENSSDUG00000010808	srl	98	93.694	Seriola_dumerili
ENSDARG00000104587	srl	94	78.000	ENSSDUG00000009161	SRL	99	78.000	Seriola_dumerili
ENSDARG00000104587	srl	97	92.918	ENSSLDG00000022024	srl	100	91.511	Seriola_lalandi_dorsalis
ENSDARG00000104587	srl	94	77.632	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSDARG00000104587	srl	95	84.081	ENSSPUG00000016859	SRL	98	84.081	Sphenodon_punctatus
ENSDARG00000104587	srl	94	78.912	ENSSPAG00000014254	SRL	98	78.912	Stegastes_partitus
ENSDARG00000104587	srl	100	91.529	ENSSPAG00000019105	srl	100	91.529	Stegastes_partitus
ENSDARG00000104587	srl	96	84.257	ENSSSCG00000007949	SRL	99	84.152	Sus_scrofa
ENSDARG00000104587	srl	77	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSDARG00000104587	srl	94	84.091	ENSTGUG00000003951	-	97	84.091	Taeniopygia_guttata
ENSDARG00000104587	srl	100	89.627	ENSTRUG00000006005	srl	100	89.627	Takifugu_rubripes
ENSDARG00000104587	srl	89	79.475	ENSTRUG00000013310	SRL	55	79.475	Takifugu_rubripes
ENSDARG00000104587	srl	97	91.630	ENSTNIG00000009739	srl	100	89.149	Tetraodon_nigroviridis
ENSDARG00000104587	srl	96	83.556	ENSUAMG00000005701	SRL	56	83.556	Ursus_americanus
ENSDARG00000104587	srl	96	83.333	ENSUMAG00000002574	SRL	55	83.333	Ursus_maritimus
ENSDARG00000104587	srl	99	81.197	ENSXETG00000017313	srl	99	83.519	Xenopus_tropicalis
ENSDARG00000104587	srl	90	92.637	ENSXCOG00000010424	srl	97	92.637	Xiphophorus_couchianus
ENSDARG00000104587	srl	96	78.097	ENSXCOG00000014584	SRL	100	78.097	Xiphophorus_couchianus
ENSDARG00000104587	srl	97	75.427	ENSXMAG00000027598	SRL	64	75.427	Xiphophorus_maculatus
ENSDARG00000104587	srl	100	90.476	ENSXMAG00000004625	srl	95	90.476	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005525	GTP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component