EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000104807 (Gene tree)
Gene ID: 108190743
Gene Symbol: si:ch73-221f6.3
Alias: -
Full Name: si:ch73-221f6.3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4897 bases
Position: chr1:58613972-58618868
Accession: ZDB-GENE-121214-21
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	1	7
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	2	7
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	3	7
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	4	7
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	5	7
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	6	7
ENSDARP00000140138	zf-C2H2	PF00096.26	5.5e-43	7	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	1	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	2	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	3	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	4	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	5	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	6	7
ENSDARP00000141221	zf-C2H2	PF00096.26	8.6e-43	7	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	1	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	2	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	3	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	4	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	5	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	6	7
ENSDARP00000138299	zf-C2H2	PF00096.26	2.3e-42	7	7
ENSDARP00000140138	zf-met	PF12874.7	1.2e-11	1	3
ENSDARP00000140138	zf-met	PF12874.7	1.2e-11	2	3
ENSDARP00000140138	zf-met	PF12874.7	1.2e-11	3	3
ENSDARP00000141221	zf-met	PF12874.7	1.8e-11	1	3
ENSDARP00000141221	zf-met	PF12874.7	1.8e-11	2	3
ENSDARP00000141221	zf-met	PF12874.7	1.8e-11	3	3
ENSDARP00000138299	zf-met	PF12874.7	4.5e-11	1	3
ENSDARP00000138299	zf-met	PF12874.7	4.5e-11	2	3
ENSDARP00000138299	zf-met	PF12874.7	4.5e-11	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000162849	-	1431	-	ENSDARP00000140138	477 (aa)	-	A0A0R4IUE4
ENSDART00000162460	-	2056	XM_017357165	ENSDARP00000141221	494 (aa)	XP_017212654	A0A0R4IUU9
ENSDART00000167354	-	1605	-	ENSDARP00000138299	534 (aa)	-	A0A0R4IPB2

Gene Model

Click here to download ENSDARG00000104807's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000104807's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000104807	si:ch73-221f6.3	100	80.368	ENSDARG00000090836	si:ch211-191d2.2	100	80.808
ENSDARG00000104807	si:ch73-221f6.3	68	48.197	ENSDARG00000099731	CABZ01066719.1	95	47.896
ENSDARG00000104807	si:ch73-221f6.3	100	86.535	ENSDARG00000104904	si:ch73-221f6.1	100	85.686
ENSDARG00000104807	si:ch73-221f6.3	65	46.885	ENSDARG00000091679	FO704858.1	95	46.885
ENSDARG00000104807	si:ch73-221f6.3	73	38.292	ENSDARG00000078159	zgc:175284	88	38.611
ENSDARG00000104807	si:ch73-221f6.3	100	78.706	ENSDARG00000104783	si:ch73-221f6.4	99	78.571
ENSDARG00000104807	si:ch73-221f6.3	69	43.348	ENSDARG00000113011	zgc:113102	93	43.348
ENSDARG00000104807	si:ch73-221f6.3	100	75.096	ENSDARG00000096528	si:ch73-236c18.9	100	74.088
ENSDARG00000104807	si:ch73-221f6.3	71	45.783	ENSDARG00000104798	BX510922.2	92	45.509
ENSDARG00000104807	si:ch73-221f6.3	90	45.205	ENSDARG00000105295	LO017784.1	97	44.776
ENSDARG00000104807	si:ch73-221f6.3	64	48.438	ENSDARG00000103777	znf1001	100	48.438
ENSDARG00000104807	si:ch73-221f6.3	68	48.197	ENSDARG00000099890	CU207221.2	98	48.197
ENSDARG00000104807	si:ch73-221f6.3	64	46.230	ENSDARG00000100803	zgc:173517	95	46.104
ENSDARG00000104807	si:ch73-221f6.3	65	43.226	ENSDARG00000105074	BX000701.2	93	45.329
ENSDARG00000104807	si:ch73-221f6.3	65	44.194	ENSDARG00000099172	BX000701.1	84	44.089
ENSDARG00000104807	si:ch73-221f6.3	65	44.516	ENSDARG00000115857	znf1001	95	44.516
ENSDARG00000104807	si:ch73-221f6.3	65	44.156	ENSDARG00000102411	CR847850.1	94	44.196
ENSDARG00000104807	si:ch73-221f6.3	69	45.583	ENSDARG00000077712	zgc:113886	99	45.583
ENSDARG00000104807	si:ch73-221f6.3	65	44.516	ENSDARG00000102401	znf1001	95	44.516
ENSDARG00000104807	si:ch73-221f6.3	65	44.681	ENSDARG00000098248	CABZ01081730.1	90	44.681

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000104807	si:ch73-221f6.3	73	35.714	ENSAPEG00000013088	-	83	38.380	Amphiprion_percula
ENSDARG00000104807	si:ch73-221f6.3	58	45.022	ENSFHEG00000018619	-	54	45.022	Fundulus_heteroclitus
ENSDARG00000104807	si:ch73-221f6.3	64	40.239	ENSFHEG00000000374	-	64	40.157	Fundulus_heteroclitus
ENSDARG00000104807	si:ch73-221f6.3	82	43.028	ENSGAFG00000013457	-	64	42.688	Gambusia_affinis
ENSDARG00000104807	si:ch73-221f6.3	65	42.960	ENSGAFG00000001156	-	60	43.701	Gambusia_affinis
ENSDARG00000104807	si:ch73-221f6.3	65	40.656	ENSGAFG00000013605	-	94	40.656	Gambusia_affinis
ENSDARG00000104807	si:ch73-221f6.3	64	45.545	ENSGAFG00000013969	-	94	45.098	Gambusia_affinis
ENSDARG00000104807	si:ch73-221f6.3	59	43.775	ENSKMAG00000009648	-	74	43.775	Kryptolebias_marmoratus
ENSDARG00000104807	si:ch73-221f6.3	68	41.343	ENSLOCG00000004661	-	99	41.343	Lepisosteus_oculatus
ENSDARG00000104807	si:ch73-221f6.3	71	37.698	ENSMZEG00005010497	-	53	38.739	Maylandia_zebra
ENSDARG00000104807	si:ch73-221f6.3	64	51.562	ENSMZEG00005010514	-	78	51.562	Maylandia_zebra
ENSDARG00000104807	si:ch73-221f6.3	82	39.095	ENSORLG00015016085	-	95	44.138	Oryzias_latipes_hsok
ENSDARG00000104807	si:ch73-221f6.3	74	44.014	ENSORLG00015014916	-	96	44.014	Oryzias_latipes_hsok
ENSDARG00000104807	si:ch73-221f6.3	74	46.753	ENSOMEG00000023820	-	82	46.753	Oryzias_melastigma
ENSDARG00000104807	si:ch73-221f6.3	89	44.086	ENSPFOG00000015002	-	67	44.086	Poecilia_formosa
ENSDARG00000104807	si:ch73-221f6.3	64	43.056	ENSPMEG00000005460	-	100	43.056	Poecilia_mexicana
ENSDARG00000104807	si:ch73-221f6.3	89	44.444	ENSPMEG00000022356	-	67	44.444	Poecilia_mexicana
ENSDARG00000104807	si:ch73-221f6.3	66	52.261	ENSPNAG00000007266	-	100	50.000	Pygocentrus_nattereri
ENSDARG00000104807	si:ch73-221f6.3	76	37.993	ENSXCOG00000003093	-	89	36.913	Xiphophorus_couchianus