EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000104904 (Gene tree)
Gene ID: 103909514
Gene Symbol: si:ch73-221f6.1
Alias: -
Full Name: si:ch73-221f6.1
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 4811 bases
Position: chr1:58601680-58606490
Accession: ZDB-GENE-121214-41
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	1	7
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	2	7
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	3	7
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	4	7
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	5	7
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	6	7
ENSDARP00000131504	zf-C2H2	PF00096.26	8.3e-41	7	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	1	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	2	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	3	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	4	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	5	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	6	7
ENSDARP00000134950	zf-C2H2	PF00096.26	8.8e-41	7	7
ENSDARP00000131504	zf-met	PF12874.7	5.5e-13	1	2
ENSDARP00000131504	zf-met	PF12874.7	5.5e-13	2	2
ENSDARP00000134950	zf-met	PF12874.7	5.8e-13	1	2
ENSDARP00000134950	zf-met	PF12874.7	5.8e-13	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000158425	-	1527	-	ENSDARP00000131504	508 (aa)	-	A0A0G2KGR9
ENSDART00000171332	-	2104	XM_009295902	ENSDARP00000134950	510 (aa)	XP_009294177	A0A0R4IIY6

Gene Model

Click here to download ENSDARG00000104904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000104904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000104904	si:ch73-221f6.1	61	43.658	ENSDARG00000102401	znf1001	95	45.659
ENSDARG00000104904	si:ch73-221f6.1	61	47.876	ENSDARG00000103777	znf1001	100	47.876
ENSDARG00000104904	si:ch73-221f6.1	74	38.564	ENSDARG00000097928	si:ch73-40a17.4	93	41.503
ENSDARG00000104904	si:ch73-221f6.1	61	47.436	ENSDARG00000090740	zmp:0000001003	100	47.436
ENSDARG00000104904	si:ch73-221f6.1	61	43.658	ENSDARG00000115857	znf1001	95	45.659
ENSDARG00000104904	si:ch73-221f6.1	65	48.710	ENSDARG00000099890	CU207221.2	99	48.710
ENSDARG00000104904	si:ch73-221f6.1	63	43.894	ENSDARG00000105074	BX000701.2	91	43.894
ENSDARG00000104904	si:ch73-221f6.1	100	85.686	ENSDARG00000104807	si:ch73-221f6.3	100	86.535
ENSDARG00000104904	si:ch73-221f6.1	62	45.886	ENSDARG00000091679	FO704858.1	99	46.104
ENSDARG00000104904	si:ch73-221f6.1	61	46.528	ENSDARG00000113011	zgc:113102	94	46.528
ENSDARG00000104904	si:ch73-221f6.1	61	46.531	ENSDARG00000103530	zgc:113102	92	46.531
ENSDARG00000104904	si:ch73-221f6.1	88	44.814	ENSDARG00000105295	LO017784.1	96	44.776
ENSDARG00000104904	si:ch73-221f6.1	99	79.840	ENSDARG00000104783	si:ch73-221f6.4	99	79.441
ENSDARG00000104904	si:ch73-221f6.1	100	75.862	ENSDARG00000096528	si:ch73-236c18.9	100	76.245
ENSDARG00000104904	si:ch73-221f6.1	98	78.112	ENSDARG00000090836	si:ch211-191d2.2	100	78.514
ENSDARG00000104904	si:ch73-221f6.1	75	40.351	ENSDARG00000099172	BX000701.1	92	41.914
ENSDARG00000104904	si:ch73-221f6.1	61	46.129	ENSDARG00000099731	CABZ01066719.1	95	46.129
ENSDARG00000104904	si:ch73-221f6.1	67	46.099	ENSDARG00000100803	zgc:173517	98	46.099
ENSDARG00000104904	si:ch73-221f6.1	61	44.012	ENSDARG00000077712	zgc:113886	97	47.419

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000104904	si:ch73-221f6.1	65	44.000	ENSACIG00000008886	znf1164	91	44.000	Amphilophus_citrinellus
ENSDARG00000104904	si:ch73-221f6.1	65	45.161	ENSACIG00000007882	-	81	45.161	Amphilophus_citrinellus
ENSDARG00000104904	si:ch73-221f6.1	74	47.321	ENSAMXG00000029660	-	52	47.321	Astyanax_mexicanus
ENSDARG00000104904	si:ch73-221f6.1	61	41.538	ENSFHEG00000013152	-	64	41.538	Fundulus_heteroclitus
ENSDARG00000104904	si:ch73-221f6.1	61	37.652	ENSMZEG00005025568	-	79	37.652	Maylandia_zebra
ENSDARG00000104904	si:ch73-221f6.1	66	35.897	ENSMALG00000008638	-	59	35.897	Monopterus_albus
ENSDARG00000104904	si:ch73-221f6.1	74	43.421	ENSPLAG00000016561	zgc:113348	79	40.385	Poecilia_latipinna
ENSDARG00000104904	si:ch73-221f6.1	73	38.415	ENSSPAG00000009426	-	81	38.415	Stegastes_partitus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0046872	metal ion binding	-	IEA	Function