EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000104919 (Gene tree)
Gene ID: 565454
Gene Symbol: si:ch211-153b23.3
Alias: -
Full Name: si:ch211-153b23.3
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 7265 bases
Position: chr14:11430796-11438060
Accession: ZDB-GENE-141216-408
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000129937	Sua5_yciO_yrdC	PF01300.18	3e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165275	-	3256	XM_009307784	ENSDARP00000129937	880 (aa)	XP_009306059	A0A0R4IB24

Gene Model

Click here to download ENSDARG00000104919's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000104919's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000104919	si:ch211-153b23.3	58	32.381	ENSAPOG00000006144	si:ch211-153b23.4	60	32.381	Acanthochromis_polyacanthus
ENSDARG00000104919	si:ch211-153b23.3	58	32.381	ENSAPOG00000006178	si:ch211-153b23.4	59	32.381	Acanthochromis_polyacanthus
ENSDARG00000104919	si:ch211-153b23.3	93	86.310	ENSACIG00000006968	si:ch211-153b23.3	100	86.310	Amphilophus_citrinellus
ENSDARG00000104919	si:ch211-153b23.3	84	30.092	ENSACIG00000006997	si:ch211-153b23.4	85	30.092	Amphilophus_citrinellus
ENSDARG00000104919	si:ch211-153b23.3	99	70.707	ENSAOCG00000010974	si:ch211-153b23.3	100	70.707	Amphiprion_ocellaris
ENSDARG00000104919	si:ch211-153b23.3	99	70.516	ENSAPEG00000014700	si:ch211-153b23.3	100	70.516	Amphiprion_percula
ENSDARG00000104919	si:ch211-153b23.3	99	71.605	ENSATEG00000004956	si:ch211-153b23.3	100	71.605	Anabas_testudineus
ENSDARG00000104919	si:ch211-153b23.3	50	37.215	ENSAPLG00000013596	-	51	36.468	Anas_platyrhynchos
ENSDARG00000104919	si:ch211-153b23.3	99	70.707	ENSACLG00000005894	si:ch211-153b23.3	100	70.595	Astatotilapia_calliptera
ENSDARG00000104919	si:ch211-153b23.3	99	77.588	ENSAMXG00000038564	si:ch211-153b23.3	99	77.588	Astyanax_mexicanus
ENSDARG00000104919	si:ch211-153b23.3	99	70.707	ENSCSEG00000014853	si:ch211-153b23.3	100	70.707	Cynoglossus_semilaevis
ENSDARG00000104919	si:ch211-153b23.3	74	31.091	ENSCSEG00000014838	si:ch211-153b23.4	77	31.091	Cynoglossus_semilaevis
ENSDARG00000104919	si:ch211-153b23.3	74	31.899	ENSCVAG00000021145	si:ch211-153b23.4	80	31.899	Cyprinodon_variegatus
ENSDARG00000104919	si:ch211-153b23.3	99	70.462	ENSCVAG00000021124	si:ch211-153b23.3	100	70.462	Cyprinodon_variegatus
ENSDARG00000104919	si:ch211-153b23.3	78	77.778	ENSELUG00000004912	si:ch211-153b23.3	98	77.778	Esox_lucius
ENSDARG00000104919	si:ch211-153b23.3	74	31.241	ENSFHEG00000010001	si:ch211-153b23.4	81	30.988	Fundulus_heteroclitus
ENSDARG00000104919	si:ch211-153b23.3	100	70.964	ENSFHEG00000010030	si:ch211-153b23.3	100	70.964	Fundulus_heteroclitus
ENSDARG00000104919	si:ch211-153b23.3	100	70.964	ENSGAFG00000007455	si:ch211-153b23.3	100	70.964	Gambusia_affinis
ENSDARG00000104919	si:ch211-153b23.3	50	34.624	ENSGAGG00000024601	-	57	34.624	Gopherus_agassizii
ENSDARG00000104919	si:ch211-153b23.3	99	70.819	ENSHBUG00000001760	si:ch211-153b23.3	100	70.707	Haplochromis_burtoni
ENSDARG00000104919	si:ch211-153b23.3	100	79.682	ENSIPUG00000015213	si:ch211-153b23.3	100	79.682	Ictalurus_punctatus
ENSDARG00000104919	si:ch211-153b23.3	74	30.689	ENSKMAG00000006829	si:ch211-153b23.4	79	30.735	Kryptolebias_marmoratus
ENSDARG00000104919	si:ch211-153b23.3	100	69.663	ENSKMAG00000006792	si:ch211-153b23.3	100	69.663	Kryptolebias_marmoratus
ENSDARG00000104919	si:ch211-153b23.3	100	70.805	ENSLBEG00000026324	si:ch211-153b23.3	100	70.805	Labrus_bergylta
ENSDARG00000104919	si:ch211-153b23.3	94	58.873	ENSLACG00000005800	-	99	58.711	Latimeria_chalumnae
ENSDARG00000104919	si:ch211-153b23.3	50	36.927	ENSLACG00000017592	si:ch211-153b23.4	51	36.927	Latimeria_chalumnae
ENSDARG00000104919	si:ch211-153b23.3	84	65.957	ENSLOCG00000015063	si:ch211-153b23.3	98	65.957	Lepisosteus_oculatus
ENSDARG00000104919	si:ch211-153b23.3	74	30.119	ENSMAMG00000009358	si:ch211-153b23.4	79	30.370	Mastacembelus_armatus
ENSDARG00000104919	si:ch211-153b23.3	74	30.267	ENSMAMG00000009277	si:ch211-153b23.4	78	30.267	Mastacembelus_armatus
ENSDARG00000104919	si:ch211-153b23.3	99	71.445	ENSMAMG00000009328	si:ch211-153b23.3	100	71.445	Mastacembelus_armatus
ENSDARG00000104919	si:ch211-153b23.3	99	70.819	ENSMZEG00005011450	si:ch211-153b23.3	100	70.707	Maylandia_zebra
ENSDARG00000104919	si:ch211-153b23.3	54	35.158	ENSMGAG00000005478	-	56	35.158	Meleagris_gallopavo
ENSDARG00000104919	si:ch211-153b23.3	99	71.044	ENSMMOG00000004436	si:ch211-153b23.3	100	71.044	Mola_mola
ENSDARG00000104919	si:ch211-153b23.3	99	71.044	ENSNBRG00000013370	si:ch211-153b23.3	100	70.932	Neolamprologus_brichardi
ENSDARG00000104919	si:ch211-153b23.3	99	70.608	ENSORLG00000006161	si:ch211-153b23.3	99	70.608	Oryzias_latipes
ENSDARG00000104919	si:ch211-153b23.3	97	69.686	ENSORLG00020000910	si:ch211-153b23.3	100	69.686	Oryzias_latipes_hni
ENSDARG00000104919	si:ch211-153b23.3	97	69.302	ENSORLG00015003698	si:ch211-153b23.3	100	69.302	Oryzias_latipes_hsok
ENSDARG00000104919	si:ch211-153b23.3	99	70.225	ENSOMEG00000007661	si:ch211-153b23.3	99	70.225	Oryzias_melastigma
ENSDARG00000104919	si:ch211-153b23.3	50	35.111	ENSPKIG00000014429	si:ch211-153b23.4	53	35.111	Paramormyrops_kingsleyae
ENSDARG00000104919	si:ch211-153b23.3	99	52.902	ENSPKIG00000021029	-	99	52.902	Paramormyrops_kingsleyae
ENSDARG00000104919	si:ch211-153b23.3	97	72.579	ENSPKIG00000022450	si:ch211-153b23.3	100	72.579	Paramormyrops_kingsleyae
ENSDARG00000104919	si:ch211-153b23.3	89	76.596	ENSPMGG00000001311	si:ch211-153b23.3	99	76.596	Periophthalmus_magnuspinnatus
ENSDARG00000104919	si:ch211-153b23.3	74	31.231	ENSPFOG00000012164	si:ch211-153b23.4	91	31.231	Poecilia_formosa
ENSDARG00000104919	si:ch211-153b23.3	100	71.605	ENSPFOG00000012289	si:ch211-153b23.3	100	71.605	Poecilia_formosa
ENSDARG00000104919	si:ch211-153b23.3	99	71.251	ENSPLAG00000016320	si:ch211-153b23.3	100	71.251	Poecilia_latipinna
ENSDARG00000104919	si:ch211-153b23.3	74	30.804	ENSPLAG00000016295	si:ch211-153b23.4	80	30.804	Poecilia_latipinna
ENSDARG00000104919	si:ch211-153b23.3	100	71.044	ENSPMEG00000008884	si:ch211-153b23.3	100	71.044	Poecilia_mexicana
ENSDARG00000104919	si:ch211-153b23.3	99	70.819	ENSPNYG00000000251	si:ch211-153b23.3	100	70.707	Pundamilia_nyererei
ENSDARG00000104919	si:ch211-153b23.3	100	80.272	ENSPNAG00000019592	si:ch211-153b23.3	100	80.272	Pygocentrus_nattereri
ENSDARG00000104919	si:ch211-153b23.3	69	53.635	ENSSFOG00015009030	-	96	53.635	Scleropages_formosus
ENSDARG00000104919	si:ch211-153b23.3	50	35.242	ENSSFOG00015010891	si:ch211-153b23.4	52	35.242	Scleropages_formosus
ENSDARG00000104919	si:ch211-153b23.3	50	34.444	ENSSFOG00015003920	-	50	34.444	Scleropages_formosus
ENSDARG00000104919	si:ch211-153b23.3	100	74.802	ENSSFOG00015010910	si:ch211-153b23.3	100	74.802	Scleropages_formosus
ENSDARG00000104919	si:ch211-153b23.3	99	71.879	ENSSMAG00000005446	si:ch211-153b23.3	100	71.879	Scophthalmus_maximus
ENSDARG00000104919	si:ch211-153b23.3	99	72.054	ENSSLDG00000008629	si:ch211-153b23.3	100	72.054	Seriola_lalandi_dorsalis
ENSDARG00000104919	si:ch211-153b23.3	54	35.639	ENSTGUG00000005499	-	56	35.639	Taeniopygia_guttata
ENSDARG00000104919	si:ch211-153b23.3	99	69.134	ENSTRUG00000020530	si:ch211-153b23.3	100	69.704	Takifugu_rubripes
ENSDARG00000104919	si:ch211-153b23.3	100	64.892	ENSTNIG00000008962	si:ch211-153b23.3	100	64.892	Tetraodon_nigroviridis
ENSDARG00000104919	si:ch211-153b23.3	100	71.605	ENSXMAG00000029318	si:ch211-153b23.3	100	71.605	Xiphophorus_maculatus
ENSDARG00000104919	si:ch211-153b23.3	74	31.744	ENSXMAG00000021388	si:ch211-153b23.4	77	31.744	Xiphophorus_maculatus
ENSDARG00000104919	si:ch211-153b23.3	74	31.493	ENSXMAG00000009416	-	76	31.493	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	21873635.	IBA	Function
GO:0003725	double-stranded RNA binding	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006450	regulation of translational fidelity	21873635.	IBA	Process
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016779	nucleotidyltransferase activity	21873635.	IBA	Function