EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000105012 (Gene tree)
Gene ID: 550514
Gene Symbol: utp23
Alias: fc04b12|wu:fc04b12|zgc:110214
Full Name: UTP23%2C small subunit (SSU) processome component%2C homolog (yeast)
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 5703 bases
Position: chr19:45962016-45967718
Accession: ZDB-GENE-050417-353
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000130967	Fcf1	PF04900.12	5.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000169710	-	1052	XM_009294455	ENSDARP00000130967	257 (aa)	XP_009292730	A0A0R4IA74

Gene Model

Click here to download ENSDARG00000105012's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000105012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000105012	utp23	54	32.624	ENSDARG00000102333	fcf1	69	32.624

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000105012	utp23	90	60.173	ENSG00000147679	UTP23	96	68.182	Homo_sapiens
ENSDARG00000105012	utp23	86	77.376	ENSAPOG00000004620	utp23	91	75.983	Acanthochromis_polyacanthus
ENSDARG00000105012	utp23	61	71.519	ENSAPOG00000004608	-	78	69.880	Acanthochromis_polyacanthus
ENSDARG00000105012	utp23	53	32.117	ENSAPOG00000010473	fcf1	66	32.117	Acanthochromis_polyacanthus
ENSDARG00000105012	utp23	61	71.698	ENSAPOG00000013233	UTP23	71	70.060	Acanthochromis_polyacanthus
ENSDARG00000105012	utp23	81	61.538	ENSAMEG00000010317	UTP23	84	61.538	Ailuropoda_melanoleuca
ENSDARG00000105012	utp23	96	76.096	ENSACIG00000013638	utp23	95	76.096	Amphilophus_citrinellus
ENSDARG00000105012	utp23	53	31.387	ENSAOCG00000003752	fcf1	66	31.387	Amphiprion_ocellaris
ENSDARG00000105012	utp23	88	76.856	ENSAOCG00000016307	utp23	91	76.856	Amphiprion_ocellaris
ENSDARG00000105012	utp23	53	31.387	ENSAPEG00000011644	fcf1	68	30.469	Amphiprion_percula
ENSDARG00000105012	utp23	81	78.947	ENSAPEG00000018976	utp23	83	78.947	Amphiprion_percula
ENSDARG00000105012	utp23	98	74.409	ENSATEG00000007509	utp23	90	80.702	Anabas_testudineus
ENSDARG00000105012	utp23	81	63.462	ENSACAG00000011061	UTP23	82	63.462	Anolis_carolinensis
ENSDARG00000105012	utp23	85	60.550	ENSANAG00000036252	-	81	60.577	Aotus_nancymaae
ENSDARG00000105012	utp23	85	61.009	ENSANAG00000025273	-	84	61.058	Aotus_nancymaae
ENSDARG00000105012	utp23	94	71.488	ENSAMXG00000020989	utp23	89	70.796	Astyanax_mexicanus
ENSDARG00000105012	utp23	83	61.502	ENSBTAG00000040422	UTP23	84	60.577	Bos_taurus
ENSDARG00000105012	utp23	84	44.037	WBGene00016411	C34E10.10	84	41.860	Caenorhabditis_elegans
ENSDARG00000105012	utp23	85	61.009	ENSCJAG00000005903	UTP23	84	61.058	Callithrix_jacchus
ENSDARG00000105012	utp23	81	62.019	ENSCAFG00000000821	UTP23	84	62.019	Canis_familiaris
ENSDARG00000105012	utp23	81	62.019	ENSCAFG00020004174	UTP23	84	62.019	Canis_lupus_dingo
ENSDARG00000105012	utp23	83	61.502	ENSCHIG00000019828	UTP23	84	60.577	Capra_hircus
ENSDARG00000105012	utp23	83	61.972	ENSTSYG00000001644	UTP23	84	61.058	Carlito_syrichta
ENSDARG00000105012	utp23	83	62.441	ENSCPOG00000034561	UTP23	77	61.538	Cavia_porcellus
ENSDARG00000105012	utp23	81	62.019	ENSCCAG00000030228	UTP23	84	62.019	Cebus_capucinus
ENSDARG00000105012	utp23	85	61.009	ENSCATG00000035129	UTP23	84	61.058	Cercocebus_atys
ENSDARG00000105012	utp23	81	60.096	ENSCLAG00000005108	-	84	60.096	Chinchilla_lanigera
ENSDARG00000105012	utp23	89	53.043	ENSCLAG00000000531	-	91	53.365	Chinchilla_lanigera
ENSDARG00000105012	utp23	85	61.468	ENSCSAG00000010933	UTP23	84	61.538	Chlorocebus_sabaeus
ENSDARG00000105012	utp23	81	61.538	ENSCHOG00000003145	UTP23	83	61.538	Choloepus_hoffmanni
ENSDARG00000105012	utp23	86	66.818	ENSCPBG00000001634	UTP23	88	64.545	Chrysemys_picta_bellii
ENSDARG00000105012	utp23	54	31.429	ENSCING00000018434	-	62	32.812	Ciona_intestinalis
ENSDARG00000105012	utp23	81	51.429	ENSCING00000012577	-	94	48.325	Ciona_intestinalis
ENSDARG00000105012	utp23	54	31.429	ENSCSAVG00000004997	-	65	32.812	Ciona_savignyi
ENSDARG00000105012	utp23	81	50.481	ENSCSAVG00000003273	-	95	50.481	Ciona_savignyi
ENSDARG00000105012	utp23	85	61.468	ENSCANG00000028461	UTP23	78	61.538	Colobus_angolensis_palliatus
ENSDARG00000105012	utp23	81	59.615	ENSCGRG00001005218	Utp23	84	59.615	Cricetulus_griseus_chok1gshd
ENSDARG00000105012	utp23	85	79.452	ENSCSEG00000011409	utp23	88	78.414	Cynoglossus_semilaevis
ENSDARG00000105012	utp23	94	75.309	ENSCVAG00000003180	utp23	94	74.793	Cyprinodon_variegatus
ENSDARG00000105012	utp23	81	62.019	ENSDNOG00000033602	UTP23	83	62.019	Dasypus_novemcinctus
ENSDARG00000105012	utp23	90	53.247	ENSDORG00000029054	-	81	52.273	Dipodomys_ordii
ENSDARG00000105012	utp23	81	44.076	FBgn0031361	CG17652	83	43.961	Drosophila_melanogaster
ENSDARG00000105012	utp23	93	58.159	ENSETEG00000015401	-	83	60.096	Echinops_telfairi
ENSDARG00000105012	utp23	92	43.220	ENSETEG00000017109	-	88	44.248	Echinops_telfairi
ENSDARG00000105012	utp23	83	53.521	ENSEBUG00000009876	utp23	90	51.923	Eptatretus_burgeri
ENSDARG00000105012	utp23	81	62.500	ENSEASG00005023141	UTP23	84	61.538	Equus_asinus_asinus
ENSDARG00000105012	utp23	81	62.019	ENSECAG00000026844	UTP23	84	62.019	Equus_caballus
ENSDARG00000105012	utp23	83	61.033	ENSEEUG00000004503	UTP23	84	60.096	Erinaceus_europaeus
ENSDARG00000105012	utp23	88	76.549	ENSELUG00000005602	utp23	90	76.549	Esox_lucius
ENSDARG00000105012	utp23	83	61.972	ENSFCAG00000036051	UTP23	84	61.538	Felis_catus
ENSDARG00000105012	utp23	81	62.500	ENSFALG00000002299	UTP23	83	61.058	Ficedula_albicollis
ENSDARG00000105012	utp23	81	61.058	ENSFDAG00000021034	UTP23	83	61.058	Fukomys_damarensis
ENSDARG00000105012	utp23	88	78.414	ENSFHEG00000008581	utp23	82	80.769	Fundulus_heteroclitus
ENSDARG00000105012	utp23	92	72.034	ENSGMOG00000015495	utp23	95	73.894	Gadus_morhua
ENSDARG00000105012	utp23	86	63.182	ENSGALG00000032400	UTP23	89	61.818	Gallus_gallus
ENSDARG00000105012	utp23	88	79.654	ENSGAFG00000002063	utp23	89	79.654	Gambusia_affinis
ENSDARG00000105012	utp23	95	71.311	ENSGACG00000002979	utp23	98	71.311	Gasterosteus_aculeatus
ENSDARG00000105012	utp23	85	61.468	ENSGGOG00000013203	UTP23	84	61.538	Gorilla_gorilla
ENSDARG00000105012	utp23	83	80.841	ENSHBUG00000023376	utp23	82	80.383	Haplochromis_burtoni
ENSDARG00000105012	utp23	80	53.398	ENSHGLG00000008717	-	84	53.398	Heterocephalus_glaber_female
ENSDARG00000105012	utp23	81	57.692	ENSHGLG00000020901	-	78	57.692	Heterocephalus_glaber_female
ENSDARG00000105012	utp23	81	60.096	ENSHGLG00000004025	UTP23	83	60.096	Heterocephalus_glaber_female
ENSDARG00000105012	utp23	79	52.941	ENSHGLG00100012817	-	100	53.778	Heterocephalus_glaber_male
ENSDARG00000105012	utp23	81	60.096	ENSHGLG00100018875	UTP23	83	60.096	Heterocephalus_glaber_male
ENSDARG00000105012	utp23	94	74.274	ENSHCOG00000007006	utp23	84	77.885	Hippocampus_comes
ENSDARG00000105012	utp23	99	72.374	ENSIPUG00000014437	utp23	89	77.974	Ictalurus_punctatus
ENSDARG00000105012	utp23	81	60.577	ENSSTOG00000001411	UTP23	89	60.000	Ictidomys_tridecemlineatus
ENSDARG00000105012	utp23	89	76.724	ENSKMAG00000002262	utp23	82	79.426	Kryptolebias_marmoratus
ENSDARG00000105012	utp23	98	72.414	ENSLBEG00000012819	utp23	81	79.524	Labrus_bergylta
ENSDARG00000105012	utp23	53	31.387	ENSLBEG00000000146	fcf1	66	31.387	Labrus_bergylta
ENSDARG00000105012	utp23	86	70.000	ENSLACG00000014611	UTP23	88	70.000	Latimeria_chalumnae
ENSDARG00000105012	utp23	93	72.269	ENSLOCG00000003289	utp23	89	70.354	Lepisosteus_oculatus
ENSDARG00000105012	utp23	91	57.447	ENSLAFG00000001282	UTP23	84	60.096	Loxodonta_africana
ENSDARG00000105012	utp23	85	61.468	ENSMFAG00000003374	UTP23	84	61.538	Macaca_fascicularis
ENSDARG00000105012	utp23	85	61.468	ENSMMUG00000020284	UTP23	84	61.538	Macaca_mulatta
ENSDARG00000105012	utp23	85	61.468	ENSMNEG00000028668	UTP23	84	61.538	Macaca_nemestrina
ENSDARG00000105012	utp23	85	61.468	ENSMLEG00000032668	UTP23	78	61.538	Mandrillus_leucophaeus
ENSDARG00000105012	utp23	94	78.189	ENSMAMG00000003259	utp23	91	79.386	Mastacembelus_armatus
ENSDARG00000105012	utp23	83	80.841	ENSMZEG00005026398	utp23	82	80.383	Maylandia_zebra
ENSDARG00000105012	utp23	86	63.636	ENSMGAG00000012472	UTP23	89	62.273	Meleagris_gallopavo
ENSDARG00000105012	utp23	81	62.019	ENSMICG00000034720	UTP23	84	62.019	Microcebus_murinus
ENSDARG00000105012	utp23	88	75.983	ENSMMOG00000014498	utp23	91	76.754	Mola_mola
ENSDARG00000105012	utp23	87	58.482	ENSMODG00000004140	UTP23	89	58.482	Monodelphis_domestica
ENSDARG00000105012	utp23	95	77.551	ENSMALG00000010867	utp23	100	72.222	Monopterus_albus
ENSDARG00000105012	utp23	81	59.135	MGP_CAROLIEiJ_G0019781	Utp23	84	59.135	Mus_caroli
ENSDARG00000105012	utp23	81	59.330	ENSMUSG00000022313	Utp23	84	59.809	Mus_musculus
ENSDARG00000105012	utp23	81	58.852	MGP_SPRETEiJ_G0020678	Utp23	81	59.330	Mus_spretus
ENSDARG00000105012	utp23	85	61.009	ENSMPUG00000000987	UTP23	88	61.009	Mustela_putorius_furo
ENSDARG00000105012	utp23	81	60.577	ENSMLUG00000004345	UTP23	84	60.577	Myotis_lucifugus
ENSDARG00000105012	utp23	83	81.776	ENSNBRG00000012946	utp23	82	81.340	Neolamprologus_brichardi
ENSDARG00000105012	utp23	85	60.550	ENSNLEG00000032995	UTP23	77	60.577	Nomascus_leucogenys
ENSDARG00000105012	utp23	83	60.563	ENSMEUG00000001566	UTP23	89	59.615	Notamacropus_eugenii
ENSDARG00000105012	utp23	84	60.829	ENSOPRG00000011227	UTP23	87	60.829	Ochotona_princeps
ENSDARG00000105012	utp23	91	60.000	ENSODEG00000018881	-	83	61.058	Octodon_degus
ENSDARG00000105012	utp23	64	77.108	ENSONIG00000013525	utp23	80	76.398	Oreochromis_niloticus
ENSDARG00000105012	utp23	87	46.875	ENSOANG00000004878	UTP23	87	47.393	Ornithorhynchus_anatinus
ENSDARG00000105012	utp23	83	61.033	ENSOCUG00000007541	UTP23	84	60.096	Oryctolagus_cuniculus
ENSDARG00000105012	utp23	94	79.098	ENSORLG00000001784	utp23	87	81.448	Oryzias_latipes
ENSDARG00000105012	utp23	94	78.689	ENSORLG00020009731	utp23	87	80.995	Oryzias_latipes_hni
ENSDARG00000105012	utp23	98	76.078	ENSORLG00015016970	utp23	87	80.995	Oryzias_latipes_hsok
ENSDARG00000105012	utp23	88	78.947	ENSOMEG00000008767	utp23	82	81.340	Oryzias_melastigma
ENSDARG00000105012	utp23	85	59.193	ENSOGAG00000017024	UTP23	84	61.058	Otolemur_garnettii
ENSDARG00000105012	utp23	83	61.502	ENSOARG00000010483	UTP23	84	60.577	Ovis_aries
ENSDARG00000105012	utp23	85	61.468	ENSPPAG00000028660	UTP23	84	61.538	Pan_paniscus
ENSDARG00000105012	utp23	83	61.972	ENSPPRG00000024902	UTP23	84	61.538	Panthera_pardus
ENSDARG00000105012	utp23	83	61.972	ENSPTIG00000019925	UTP23	84	61.538	Panthera_tigris_altaica
ENSDARG00000105012	utp23	90	60.173	ENSPTRG00000020521	UTP23	86	60.173	Pan_troglodytes
ENSDARG00000105012	utp23	85	61.468	ENSPANG00000011559	UTP23	84	61.538	Papio_anubis
ENSDARG00000105012	utp23	91	74.786	ENSPKIG00000018790	utp23	95	74.890	Paramormyrops_kingsleyae
ENSDARG00000105012	utp23	86	67.273	ENSPSIG00000013132	UTP23	88	65.000	Pelodiscus_sinensis
ENSDARG00000105012	utp23	88	71.806	ENSPMGG00000019770	utp23	90	71.806	Periophthalmus_magnuspinnatus
ENSDARG00000105012	utp23	87	58.036	ENSPCIG00000018598	UTP23	87	58.036	Phascolarctos_cinereus
ENSDARG00000105012	utp23	88	79.386	ENSPFOG00000003590	utp23	90	79.386	Poecilia_formosa
ENSDARG00000105012	utp23	88	79.825	ENSPLAG00000017925	utp23	90	79.825	Poecilia_latipinna
ENSDARG00000105012	utp23	88	79.825	ENSPMEG00000006728	utp23	90	79.825	Poecilia_mexicana
ENSDARG00000105012	utp23	84	80.734	ENSPREG00000002478	utp23	85	80.734	Poecilia_reticulata
ENSDARG00000105012	utp23	90	60.606	ENSPPYG00000018831	UTP23	92	60.606	Pongo_abelii
ENSDARG00000105012	utp23	81	60.096	ENSPCAG00000009093	UTP23	84	60.096	Procavia_capensis
ENSDARG00000105012	utp23	86	60.455	ENSPVAG00000002661	UTP23	88	60.455	Pteropus_vampyrus
ENSDARG00000105012	utp23	83	80.374	ENSPNYG00000017636	utp23	82	79.904	Pundamilia_nyererei
ENSDARG00000105012	utp23	84	74.537	ENSPNAG00000024538	utp23	93	75.330	Pygocentrus_nattereri
ENSDARG00000105012	utp23	81	59.615	ENSRNOG00000004387	Utp23	84	59.615	Rattus_norvegicus
ENSDARG00000105012	utp23	85	61.468	ENSRBIG00000026267	UTP23	84	61.538	Rhinopithecus_bieti
ENSDARG00000105012	utp23	85	61.468	ENSRROG00000028593	UTP23	84	61.538	Rhinopithecus_roxellana
ENSDARG00000105012	utp23	81	62.019	ENSSBOG00000018914	UTP23	84	62.019	Saimiri_boliviensis_boliviensis
ENSDARG00000105012	utp23	63	52.147	ENSSHAG00000015399	UTP23	83	52.147	Sarcophilus_harrisii
ENSDARG00000105012	utp23	88	74.779	ENSSFOG00015009226	utp23	98	74.779	Scleropages_formosus
ENSDARG00000105012	utp23	98	72.941	ENSSMAG00000020390	utp23	82	77.990	Scophthalmus_maximus
ENSDARG00000105012	utp23	93	77.500	ENSSDUG00000020272	utp23	95	78.070	Seriola_dumerili
ENSDARG00000105012	utp23	92	77.731	ENSSLDG00000000393	utp23	95	77.632	Seriola_lalandi_dorsalis
ENSDARG00000105012	utp23	83	68.545	ENSSPUG00000011572	UTP23	84	67.788	Sphenodon_punctatus
ENSDARG00000105012	utp23	88	78.603	ENSSPAG00000013890	utp23	92	78.603	Stegastes_partitus
ENSDARG00000105012	utp23	83	61.972	ENSSSCG00000030493	UTP23	83	61.058	Sus_scrofa
ENSDARG00000105012	utp23	95	59.592	ENSTGUG00000012316	-	97	58.367	Taeniopygia_guttata
ENSDARG00000105012	utp23	81	61.058	ENSTGUG00000015403	-	88	59.615	Taeniopygia_guttata
ENSDARG00000105012	utp23	93	71.488	ENSTRUG00000023365	utp23	95	71.488	Takifugu_rubripes
ENSDARG00000105012	utp23	79	60.784	ENSTBEG00000008655	UTP23	83	60.784	Tupaia_belangeri
ENSDARG00000105012	utp23	83	61.502	ENSTTRG00000015295	UTP23	84	60.577	Tursiops_truncatus
ENSDARG00000105012	utp23	81	61.058	ENSUMAG00000020439	UTP23	84	61.058	Ursus_maritimus
ENSDARG00000105012	utp23	83	60.563	ENSVPAG00000009358	UTP23	84	59.615	Vicugna_pacos
ENSDARG00000105012	utp23	81	62.019	ENSVVUG00000015307	UTP23	84	62.019	Vulpes_vulpes
ENSDARG00000105012	utp23	81	60.577	ENSXETG00000020781	utp23	98	59.671	Xenopus_tropicalis
ENSDARG00000105012	utp23	88	79.039	ENSXCOG00000019504	utp23	90	79.039	Xiphophorus_couchianus
ENSDARG00000105012	utp23	88	79.039	ENSXMAG00000014058	utp23	90	79.039	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0032040	small-subunit processome	-	IEA	Component
GO:0070181	small ribosomal subunit rRNA binding	21873635.	IBA	Function