EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000105037 (Gene tree)
Gene ID
445404
Gene Symbol
snrpf
Alias
snrpfl
Full Name
small nuclear ribonucleoprotein polypeptide F
Gene Type
protein_coding
Species
Danio_rerio
Status
putative
Strand
Plus strand
Length
3342 bases
Position
chr7:19374683-19378024
Accession
ZDB-GENE-040930-9
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000134257LSMPF01423.221.6e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000162700-623-ENSDARP0000013425788 (aa)-A0A0R4IHJ1
Gene Model
Click here to download ENSDARG00000105037's gene model file
Pathways
Pathway IDPathway NameSource
dre03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000105037's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000105037snrpf7748.529ENSDARG00000036995lsm68348.529
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000105037snrpf10095.455ENSG00000139343SNRPF10095.455Homo_sapiens
ENSDARG00000105037snrpf9997.701ENSAPOG00000003377snrpf6697.701Acanthochromis_polyacanthus
ENSDARG00000105037snrpf8982.051ENSAMEG00000018718-8783.117Ailuropoda_melanoleuca
ENSDARG00000105037snrpf9995.402ENSAMEG00000002166-10095.402Ailuropoda_melanoleuca
ENSDARG00000105037snrpf9897.674ENSACIG00000013216snrpf9997.674Amphilophus_citrinellus
ENSDARG00000105037snrpf9897.674ENSAOCG00000015108snrpf9997.674Amphiprion_ocellaris
ENSDARG00000105037snrpf9897.674ENSAPEG00000022022snrpf9997.674Amphiprion_percula
ENSDARG00000105037snrpf9897.674ENSATEG00000022625snrpf9097.674Anabas_testudineus
ENSDARG00000105037snrpf9994.253ENSACAG00000014073SNRPF9894.253Anolis_carolinensis
ENSDARG00000105037snrpf8386.301ENSANAG00000020297-6586.301Aotus_nancymaae
ENSDARG00000105037snrpf10095.455ENSANAG00000032845SNRPF10095.455Aotus_nancymaae
ENSDARG00000105037snrpf8866.234ENSANAG00000025860-8564.935Aotus_nancymaae
ENSDARG00000105037snrpf9897.674ENSACLG00000016066snrpf9997.674Astatotilapia_calliptera
ENSDARG00000105037snrpf8894.805ENSAMXG00000007421snrpf8794.805Astyanax_mexicanus
ENSDARG00000105037snrpf10095.455ENSBTAG00000016271SNRPF10095.455Bos_taurus
ENSDARG00000105037snrpf9188.750ENSBTAG00000050012-9388.312Bos_taurus
ENSDARG00000105037snrpf9069.620WBGene00004918snr-58571.622Caenorhabditis_elegans
ENSDARG00000105037snrpf10095.455ENSCJAG00000002705-10095.455Callithrix_jacchus
ENSDARG00000105037snrpf10095.455ENSCAFG00000006395-7795.455Canis_familiaris
ENSDARG00000105037snrpf8586.667ENSCAFG00000031151-8589.333Canis_familiaris
ENSDARG00000105037snrpf8586.667ENSCAFG00020010823-8589.333Canis_lupus_dingo
ENSDARG00000105037snrpf9183.750ENSCAFG00020013161-7491.667Canis_lupus_dingo
ENSDARG00000105037snrpf8889.744ENSTSYG00000036502-8789.744Carlito_syrichta
ENSDARG00000105037snrpf8881.818ENSTSYG00000030635-8781.818Carlito_syrichta
ENSDARG00000105037snrpf9489.157ENSTSYG00000031636-6190.667Carlito_syrichta
ENSDARG00000105037snrpf9995.402ENSCAPG00000007242SNRPF10095.402Cavia_aperea
ENSDARG00000105037snrpf10095.455ENSCPOG00000013898SNRPF10095.455Cavia_porcellus
ENSDARG00000105037snrpf10084.091ENSCCAG00000033627-5984.416Cebus_capucinus
ENSDARG00000105037snrpf10095.455ENSCCAG00000037378-10095.455Cebus_capucinus
ENSDARG00000105037snrpf10094.318ENSCCAG00000017356-10094.318Cebus_capucinus
ENSDARG00000105037snrpf10095.455ENSCLAG00000007200SNRPF10095.455Chinchilla_lanigera
ENSDARG00000105037snrpf10095.455ENSCSAG00000003602-7095.455Chlorocebus_sabaeus
ENSDARG00000105037snrpf7593.939ENSCHOG00000009392SNRPF10093.939Choloepus_hoffmanni
ENSDARG00000105037snrpf10084.091ENSCPBG00000001985-8985.714Chrysemys_picta_bellii
ENSDARG00000105037snrpf10085.227ENSCPBG00000026463-8785.714Chrysemys_picta_bellii
ENSDARG00000105037snrpf9989.655ENSCPBG00000024287-6090.789Chrysemys_picta_bellii
ENSDARG00000105037snrpf8887.013ENSCPBG00000006227-8787.013Chrysemys_picta_bellii
ENSDARG00000105037snrpf9985.057ENSCSAVG00000007498-8486.842Ciona_savignyi
ENSDARG00000105037snrpf8887.013ENSCGRG00001008965-5887.013Cricetulus_griseus_chok1gshd
ENSDARG00000105037snrpf10095.455ENSCGRG00001017100-10095.455Cricetulus_griseus_chok1gshd
ENSDARG00000105037snrpf10095.455ENSCGRG00000000336-10095.455Cricetulus_griseus_crigri
ENSDARG00000105037snrpf9387.805ENSCGRG00000018878-9487.013Cricetulus_griseus_crigri
ENSDARG00000105037snrpf10096.591ENSCSEG00000004748snrpf10096.591Cynoglossus_semilaevis
ENSDARG00000105037snrpf9997.701ENSCVAG00000000397snrpf6797.701Cyprinodon_variegatus
ENSDARG00000105037snrpf8879.221ENSDNOG00000049373-6579.221Dasypus_novemcinctus
ENSDARG00000105037snrpf10094.318ENSDNOG00000048989-7794.318Dasypus_novemcinctus
ENSDARG00000105037snrpf10095.455ENSDNOG00000043775-5595.455Dasypus_novemcinctus
ENSDARG00000105037snrpf8485.135ENSDORG00000025351-10085.135Dipodomys_ordii
ENSDARG00000105037snrpf6991.803ENSDORG00000029740-7291.803Dipodomys_ordii
ENSDARG00000105037snrpf9875.581FBgn0000426SmF8378.667Drosophila_melanogaster
ENSDARG00000105037snrpf10095.455ENSETEG00000001558-10095.455Echinops_telfairi
ENSDARG00000105037snrpf9573.810ENSEBUG00000001793-7284.058Eptatretus_burgeri
ENSDARG00000105037snrpf10095.455ENSECAG00000019817SNRPF7095.455Equus_caballus
ENSDARG00000105037snrpf9995.402ENSEEUG00000013509SNRPF10095.402Erinaceus_europaeus
ENSDARG00000105037snrpf10092.045ENSELUG00000007737RUXF8693.506Esox_lucius
ENSDARG00000105037snrpf10095.455ENSELUG00000003121RUXF10095.455Esox_lucius
ENSDARG00000105037snrpf9874.419ENSFCAG00000031148-6971.429Felis_catus
ENSDARG00000105037snrpf8871.429ENSFCAG00000021942-8771.429Felis_catus
ENSDARG00000105037snrpf10095.455ENSFCAG00000029966-10095.455Felis_catus
ENSDARG00000105037snrpf9995.402ENSFALG00000010799SNRPF9995.402Ficedula_albicollis
ENSDARG00000105037snrpf10095.455ENSFDAG00000002831-10095.455Fukomys_damarensis
ENSDARG00000105037snrpf9997.701ENSFHEG00000003240snrpf7597.701Fundulus_heteroclitus
ENSDARG00000105037snrpf9997.701ENSGMOG00000007741snrpf10097.701Gadus_morhua
ENSDARG00000105037snrpf10095.455ENSGALG00000011409SNRPF10095.455Gallus_gallus
ENSDARG00000105037snrpf9897.674ENSGAFG00000016187snrpf9797.674Gambusia_affinis
ENSDARG00000105037snrpf9996.552ENSGACG00000020055snrpf10096.552Gasterosteus_aculeatus
ENSDARG00000105037snrpf7085.484ENSGAGG00000011163-8688.235Gopherus_agassizii
ENSDARG00000105037snrpf8181.690ENSGAGG00000014132-8381.690Gopherus_agassizii
ENSDARG00000105037snrpf7390.625ENSGAGG00000020974-5487.879Gopherus_agassizii
ENSDARG00000105037snrpf9286.420ENSGAGG00000022991-8088.571Gopherus_agassizii
ENSDARG00000105037snrpf8688.158ENSGAGG00000012945-6989.610Gopherus_agassizii
ENSDARG00000105037snrpf9876.744ENSGGOG00000039936-8374.026Gorilla_gorilla
ENSDARG00000105037snrpf10095.455ENSGGOG00000001127-10095.455Gorilla_gorilla
ENSDARG00000105037snrpf9272.840ENSGGOG00000039564-9071.429Gorilla_gorilla
ENSDARG00000105037snrpf10095.455ENSHGLG00000009108SNRPF10095.455Heterocephalus_glaber_female
ENSDARG00000105037snrpf10094.318ENSHGLG00000021172-10094.318Heterocephalus_glaber_female
ENSDARG00000105037snrpf10094.318ENSHGLG00100019596-10094.318Heterocephalus_glaber_male
ENSDARG00000105037snrpf9995.402ENSHGLG00100008103-10095.402Heterocephalus_glaber_male
ENSDARG00000105037snrpf7486.111ENSHCOG00000018663snrpf5586.111Hippocampus_comes
ENSDARG00000105037snrpf10097.727ENSIPUG00000018994snrpf10097.727Ictalurus_punctatus
ENSDARG00000105037snrpf10095.455ENSSTOG00000010434-10095.455Ictidomys_tridecemlineatus
ENSDARG00000105037snrpf7888.406ENSJJAG00000004828-8689.655Jaculus_jaculus
ENSDARG00000105037snrpf10095.455ENSJJAG00000011272-10095.455Jaculus_jaculus
ENSDARG00000105037snrpf10077.273ENSJJAG00000004558-8977.922Jaculus_jaculus
ENSDARG00000105037snrpf10080.682ENSJJAG00000010502-8981.818Jaculus_jaculus
ENSDARG00000105037snrpf10096.591ENSKMAG00000013566snrpf10096.591Kryptolebias_marmoratus
ENSDARG00000105037snrpf10096.591ENSLBEG00000008800snrpf10096.591Labrus_bergylta
ENSDARG00000105037snrpf10094.318ENSLACG00000002456-7494.318Latimeria_chalumnae
ENSDARG00000105037snrpf10095.455ENSLOCG00000015744snrpf10095.455Lepisosteus_oculatus
ENSDARG00000105037snrpf9995.402ENSLAFG00000017426SNRPF9995.402Loxodonta_africana
ENSDARG00000105037snrpf9896.512ENSMAMG00000016593snrpf9996.512Mastacembelus_armatus
ENSDARG00000105037snrpf9897.674ENSMZEG00005014701snrpf9997.674Maylandia_zebra
ENSDARG00000105037snrpf9895.349ENSMGAG00000011453-7695.349Meleagris_gallopavo
ENSDARG00000105037snrpf8890.909ENSMAUG00000008799-8790.909Mesocricetus_auratus
ENSDARG00000105037snrpf9770.588ENSMAUG00000010289-6690.385Mesocricetus_auratus
ENSDARG00000105037snrpf8694.737ENSMAUG00000016909-10094.737Mesocricetus_auratus
ENSDARG00000105037snrpf8694.737ENSMAUG00000019737-10094.737Mesocricetus_auratus
ENSDARG00000105037snrpf8888.312ENSMICG00000030494-6088.312Microcebus_murinus
ENSDARG00000105037snrpf10095.455ENSMICG00000012153-10095.455Microcebus_murinus
ENSDARG00000105037snrpf8881.818ENSMOCG00000022166-8281.818Microtus_ochrogaster
ENSDARG00000105037snrpf10095.455ENSMOCG00000020437Snrpf10095.455Microtus_ochrogaster
ENSDARG00000105037snrpf8078.571ENSMOCG00000020220-8778.571Microtus_ochrogaster
ENSDARG00000105037snrpf9996.552ENSMMOG00000007127snrpf10096.552Mola_mola
ENSDARG00000105037snrpf10095.455ENSMODG00000008091SNRPF7595.455Monodelphis_domestica
ENSDARG00000105037snrpf9897.674ENSMALG00000012328snrpf9997.674Monopterus_albus
ENSDARG00000105037snrpf10095.455MGP_CAROLIEiJ_G0015735-10095.455Mus_caroli
ENSDARG00000105037snrpf10095.455ENSMUSG00000020018Snrpf10095.455Mus_musculus
ENSDARG00000105037snrpf10095.455MGP_PahariEiJ_G0031350Snrpf10095.455Mus_pahari
ENSDARG00000105037snrpf10095.455MGP_SPRETEiJ_G0016553Snrpf10095.455Mus_spretus
ENSDARG00000105037snrpf10095.455ENSMPUG00000007176-7795.455Mustela_putorius_furo
ENSDARG00000105037snrpf10095.455ENSMLUG00000027932-8195.455Myotis_lucifugus
ENSDARG00000105037snrpf9995.402ENSMLUG00000013577-10095.402Myotis_lucifugus
ENSDARG00000105037snrpf10095.455ENSMLUG00000026149-8195.455Myotis_lucifugus
ENSDARG00000105037snrpf10095.455ENSMLUG00000029201-8195.455Myotis_lucifugus
ENSDARG00000105037snrpf10076.136ENSMLUG00000026269-7174.026Myotis_lucifugus
ENSDARG00000105037snrpf10095.455ENSNGAG00000024292-10095.455Nannospalax_galili
ENSDARG00000105037snrpf7487.692ENSNGAG00000005851-7187.097Nannospalax_galili
ENSDARG00000105037snrpf9997.701ENSNBRG00000011682snrpf8797.701Neolamprologus_brichardi
ENSDARG00000105037snrpf8668.421ENSMEUG00000000671SNRPF8768.421Notamacropus_eugenii
ENSDARG00000105037snrpf10095.455ENSODEG00000010328-10095.455Octodon_degus
ENSDARG00000105037snrpf10094.318ENSOCUG00000010925SNRPF7694.318Oryctolagus_cuniculus
ENSDARG00000105037snrpf8694.737ENSORLG00020008216snrpf8794.737Oryzias_latipes_hni
ENSDARG00000105037snrpf8694.737ENSORLG00015007418snrpf8794.737Oryzias_latipes_hsok
ENSDARG00000105037snrpf9896.512ENSOMEG00000003018snrpf9996.512Oryzias_melastigma
ENSDARG00000105037snrpf8893.506ENSOGAG00000030323-8793.506Otolemur_garnettii
ENSDARG00000105037snrpf10095.455ENSOARG00000011853-7595.455Ovis_aries
ENSDARG00000105037snrpf9272.840ENSPPAG00000037479-9171.429Pan_paniscus
ENSDARG00000105037snrpf9876.744ENSPPAG00000037544-8374.026Pan_paniscus
ENSDARG00000105037snrpf10095.455ENSPPRG00000005875-10095.455Panthera_pardus
ENSDARG00000105037snrpf9873.256ENSPPRG00000007449-7772.727Panthera_pardus
ENSDARG00000105037snrpf9875.581ENSPTIG00000005117-8972.727Panthera_tigris_altaica
ENSDARG00000105037snrpf10095.455ENSPTIG00000007520SNRPF10095.455Panthera_tigris_altaica
ENSDARG00000105037snrpf9272.840ENSPTRG00000047717-9171.429Pan_troglodytes
ENSDARG00000105037snrpf9876.744ENSPTRG00000043814-8374.026Pan_troglodytes
ENSDARG00000105037snrpf9997.701ENSPKIG00000014784snrpf9397.701Paramormyrops_kingsleyae
ENSDARG00000105037snrpf9995.402ENSPSIG00000016462SNRPF9995.402Pelodiscus_sinensis
ENSDARG00000105037snrpf9996.552ENSPMGG00000023548snrpf10096.552Periophthalmus_magnuspinnatus
ENSDARG00000105037snrpf10095.455ENSPEMG00000023326Snrpf10095.455Peromyscus_maniculatus_bairdii
ENSDARG00000105037snrpf9897.674ENSPLAG00000023932snrpf9997.674Poecilia_latipinna
ENSDARG00000105037snrpf9897.674ENSPMEG00000003377snrpf9997.674Poecilia_mexicana
ENSDARG00000105037snrpf9897.674ENSPREG00000022635snrpf9797.674Poecilia_reticulata
ENSDARG00000105037snrpf10095.455ENSPPYG00000004847-10095.455Pongo_abelii
ENSDARG00000105037snrpf10095.455ENSPCOG00000023833-10095.455Propithecus_coquereli
ENSDARG00000105037snrpf10095.455ENSPVAG00000009036SNRPF10095.455Pteropus_vampyrus
ENSDARG00000105037snrpf9897.674ENSPNYG00000021712snrpf9997.674Pundamilia_nyererei
ENSDARG00000105037snrpf9896.512ENSPNAG00000019117snrpf9996.512Pygocentrus_nattereri
ENSDARG00000105037snrpf10095.455ENSRNOG00000005556Snrpf10095.455Rattus_norvegicus
ENSDARG00000105037snrpf8892.208ENSRBIG00000030414-8792.208Rhinopithecus_bieti
ENSDARG00000105037snrpf8892.208ENSRROG00000021975-8792.208Rhinopithecus_roxellana
ENSDARG00000105037snrpf8258.904YPR182WSMX38358.904Saccharomyces_cerevisiae
ENSDARG00000105037snrpf8880.519ENSSBOG00000032297-8680.519Saimiri_boliviensis_boliviensis
ENSDARG00000105037snrpf10094.318ENSSBOG00000012868-10094.318Saimiri_boliviensis_boliviensis
ENSDARG00000105037snrpf8875.000ENSSBOG00000027638-8875.000Saimiri_boliviensis_boliviensis
ENSDARG00000105037snrpf10095.455ENSSBOG00000036179-10095.455Saimiri_boliviensis_boliviensis
ENSDARG00000105037snrpf9995.402ENSSHAG00000012294SNRPF7795.402Sarcophilus_harrisii
ENSDARG00000105037snrpf7596.970ENSSFOG00015021523snrpf9696.970Scleropages_formosus
ENSDARG00000105037snrpf10095.455ENSSMAG00000005533snrpf9995.455Scophthalmus_maximus
ENSDARG00000105037snrpf7697.015ENSSDUG00000016283snrpf7797.015Seriola_dumerili
ENSDARG00000105037snrpf9369.512ENSSLDG00000003885-9072.368Seriola_lalandi_dorsalis
ENSDARG00000105037snrpf10096.591ENSSLDG00000005119snrpf10096.591Seriola_lalandi_dorsalis
ENSDARG00000105037snrpf9895.349ENSSPUG00000014590-9995.349Sphenodon_punctatus
ENSDARG00000105037snrpf9997.701ENSSPAG00000003283snrpf9797.701Stegastes_partitus
ENSDARG00000105037snrpf10095.455ENSSSCG00000000895SNRPF10095.455Sus_scrofa
ENSDARG00000105037snrpf8195.775ENSTRUG00000014956snrpf10095.775Takifugu_rubripes
ENSDARG00000105037snrpf10096.591ENSTNIG00000012672snrpf10096.591Tetraodon_nigroviridis
ENSDARG00000105037snrpf8868.831ENSTTRG00000006070SNRPF8768.831Tursiops_truncatus
ENSDARG00000105037snrpf10095.455ENSUAMG00000008176-10095.455Ursus_americanus
ENSDARG00000105037snrpf10082.955ENSUAMG00000001101-8884.416Ursus_americanus
ENSDARG00000105037snrpf10095.455ENSUMAG00000003528-10095.455Ursus_maritimus
ENSDARG00000105037snrpf8884.416ENSUMAG00000006177-8884.416Ursus_maritimus
ENSDARG00000105037snrpf10095.455ENSVPAG00000008712-10095.455Vicugna_pacos
ENSDARG00000105037snrpf9187.500ENSVVUG00000023821-9687.013Vulpes_vulpes
ENSDARG00000105037snrpf8672.368ENSXETG00000021630snrpf8772.368Xenopus_tropicalis
ENSDARG00000105037snrpf9897.674ENSXCOG00000013860snrpf9797.674Xiphophorus_couchianus
ENSDARG00000105037snrpf9897.674ENSXMAG00000015448snrpf9997.674Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000387spliceosomal snRNP assembly-IEAProcess
GO:0000398mRNA splicing, via spliceosome-IEAProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding-IEAFunction
GO:0005634nucleus-IEAComponent
GO:0005681spliceosomal complex-IEAComponent
GO:0005685U1 snRNP21873635.IBAComponent
GO:0005732small nucleolar ribonucleoprotein complex-IEAComponent
GO:0006397mRNA processing-IEAProcess
GO:0008380RNA splicing-IEAProcess
GO:0019012virion-IEAComponent
GO:0019013viral nucleocapsid-IEAComponent
GO:0071013catalytic step 2 spliceosome21873635.IBAComponent

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us