EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000105083 (Gene tree)
Gene ID: 553422
Gene Symbol: chd5
Alias: -
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 76188 bases
Position: chr11:29574743-29650930
Accession: ZDB-GENE-120314-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000135126	ResIII	PF04851.15	3.7e-08	1	1
ENSDARP00000154248	ResIII	PF04851.15	4e-08	1	1
ENSDARP00000152266	ResIII	PF04851.15	4.1e-08	1	1
ENSDARP00000133704	ResIII	PF04851.15	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000193935	-	8704	-	ENSDARP00000154248	1602 (aa)	-	A0A2R8QGR4
ENSDART00000191646	-	8788	-	ENSDARP00000152266	1630 (aa)	-	A0A2R8QC65
ENSDART00000166969	-	9290	XM_003199497	ENSDARP00000133704	1980 (aa)	XP_003199545	A0A0R4IJ89
ENSDART00000162587	-	8620	-	ENSDARP00000135126	1574 (aa)	-	A0A0R4IM65

Gene Model

Click here to download ENSDARG00000105083's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000105083's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000105083	chd5	94	71.598	ENSDARG00000025789	chd4b	93	68.430
ENSDARG00000105083	chd5	97	76.066	ENSDARG00000021405	chd3	96	71.918
ENSDARG00000105083	chd5	95	71.578	ENSDARG00000063535	chd4a	92	69.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000105083	chd5	97	79.031	ENSG00000116254	CHD5	96	82.220	Homo_sapiens
ENSDARG00000105083	chd5	97	78.129	ENSAMEG00000009880	CHD5	98	76.114	Ailuropoda_melanoleuca
ENSDARG00000105083	chd5	99	86.594	ENSACIG00000012582	chd5	99	85.792	Amphilophus_citrinellus
ENSDARG00000105083	chd5	100	87.264	ENSAOCG00000020356	chd5	99	84.842	Amphiprion_ocellaris
ENSDARG00000105083	chd5	95	77.086	ENSAPLG00000015475	CHD5	95	74.560	Anas_platyrhynchos
ENSDARG00000105083	chd5	97	77.175	ENSACAG00000002441	CHD5	99	73.383	Anolis_carolinensis
ENSDARG00000105083	chd5	91	79.352	ENSANAG00000001078	CHD5	91	78.028	Aotus_nancymaae
ENSDARG00000105083	chd5	97	80.428	ENSACLG00000003012	chd5	99	79.594	Astatotilapia_calliptera
ENSDARG00000105083	chd5	90	92.493	ENSAMXG00000008921	chd5	98	89.377	Astyanax_mexicanus
ENSDARG00000105083	chd5	97	78.214	ENSBTAG00000040477	CHD5	99	77.302	Bos_taurus
ENSDARG00000105083	chd5	97	78.911	ENSCJAG00000000101	CHD5	96	76.983	Callithrix_jacchus
ENSDARG00000105083	chd5	97	79.605	ENSCAFG00000019545	CHD5	99	77.892	Canis_familiaris
ENSDARG00000105083	chd5	97	81.067	ENSCAFG00020008689	CHD5	93	78.408	Canis_lupus_dingo
ENSDARG00000105083	chd5	98	78.165	ENSCHIG00000015027	CHD5	94	76.461	Capra_hircus
ENSDARG00000105083	chd5	97	76.604	ENSTSYG00000033991	CHD5	97	74.172	Carlito_syrichta
ENSDARG00000105083	chd5	97	80.742	ENSCAPG00000009294	CHD5	98	78.526	Cavia_aperea
ENSDARG00000105083	chd5	97	80.742	ENSCPOG00000025080	CHD5	98	78.526	Cavia_porcellus
ENSDARG00000105083	chd5	97	79.845	ENSCCAG00000024756	CHD5	96	76.827	Cebus_capucinus
ENSDARG00000105083	chd5	97	78.847	ENSCATG00000043011	CHD5	94	77.981	Cercocebus_atys
ENSDARG00000105083	chd5	97	81.120	ENSCLAG00000010589	CHD5	98	78.950	Chinchilla_lanigera
ENSDARG00000105083	chd5	97	78.974	ENSCSAG00000000733	CHD5	96	77.268	Chlorocebus_sabaeus
ENSDARG00000105083	chd5	100	78.576	ENSCPBG00000019363	CHD5	99	77.844	Chrysemys_picta_bellii
ENSDARG00000105083	chd5	98	78.365	ENSCANG00000032302	CHD5	97	76.827	Colobus_angolensis_palliatus
ENSDARG00000105083	chd5	51	82.224	ENSCGRG00001011042	Chd5	99	80.657	Cricetulus_griseus_chok1gshd
ENSDARG00000105083	chd5	97	80.455	ENSCGRG00000011341	Chd5	98	78.761	Cricetulus_griseus_crigri
ENSDARG00000105083	chd5	92	83.202	ENSDNOG00000046342	CHD5	96	73.438	Dasypus_novemcinctus
ENSDARG00000105083	chd5	97	80.547	ENSDORG00000005923	Chd5	98	78.685	Dipodomys_ordii
ENSDARG00000105083	chd5	88	92.093	ENSEASG00005021464	CHD5	95	90.338	Equus_asinus_asinus
ENSDARG00000105083	chd5	86	92.093	ENSECAG00000025043	CHD5	95	90.338	Equus_caballus
ENSDARG00000105083	chd5	74	85.253	ENSEEUG00000002772	CHD5	73	84.332	Erinaceus_europaeus
ENSDARG00000105083	chd5	96	88.408	ENSELUG00000010742	chd5	94	88.446	Esox_lucius
ENSDARG00000105083	chd5	97	79.477	ENSFCAG00000006319	CHD5	96	77.510	Felis_catus
ENSDARG00000105083	chd5	97	78.734	ENSFALG00000009740	CHD5	97	76.050	Ficedula_albicollis
ENSDARG00000105083	chd5	97	79.974	ENSFDAG00000012881	CHD5	95	77.435	Fukomys_damarensis
ENSDARG00000105083	chd5	97	79.098	ENSGALG00000000747	CHD5	96	77.668	Gallus_gallus
ENSDARG00000105083	chd5	57	87.323	ENSGACG00000004389	chd5	97	87.323	Gasterosteus_aculeatus
ENSDARG00000105083	chd5	91	85.714	ENSGAGG00000001590	CHD5	97	92.000	Gopherus_agassizii
ENSDARG00000105083	chd5	97	79.031	ENSGGOG00000000708	CHD5	98	76.724	Gorilla_gorilla
ENSDARG00000105083	chd5	97	80.794	ENSHBUG00000013453	chd5	99	79.852	Haplochromis_burtoni
ENSDARG00000105083	chd5	97	80.612	ENSHGLG00000018184	CHD5	99	77.035	Heterocephalus_glaber_female
ENSDARG00000105083	chd5	97	73.172	ENSHGLG00100013261	CHD5	95	71.808	Heterocephalus_glaber_male
ENSDARG00000105083	chd5	99	87.604	ENSIPUG00000005446	chd5	99	86.714	Ictalurus_punctatus
ENSDARG00000105083	chd5	97	80.702	ENSSTOG00000002778	CHD5	98	78.507	Ictidomys_tridecemlineatus
ENSDARG00000105083	chd5	97	80.794	ENSJJAG00000019072	Chd5	96	78.833	Jaculus_jaculus
ENSDARG00000105083	chd5	100	85.968	ENSLOCG00000004944	chd5	99	83.342	Lepisosteus_oculatus
ENSDARG00000105083	chd5	97	79.701	ENSLAFG00000006348	CHD5	100	77.231	Loxodonta_africana
ENSDARG00000105083	chd5	99	77.771	ENSMFAG00000033993	CHD5	99	77.874	Macaca_fascicularis
ENSDARG00000105083	chd5	98	80.180	ENSMMUG00000016838	CHD5	97	77.784	Macaca_mulatta
ENSDARG00000105083	chd5	98	78.365	ENSMNEG00000040044	CHD5	96	77.135	Macaca_nemestrina
ENSDARG00000105083	chd5	99	75.296	ENSMLEG00000039166	CHD5	98	74.015	Mandrillus_leucophaeus
ENSDARG00000105083	chd5	97	79.961	ENSMZEG00005000841	chd5	94	87.134	Maylandia_zebra
ENSDARG00000105083	chd5	97	79.505	ENSMGAG00000001055	CHD5	96	77.587	Meleagris_gallopavo
ENSDARG00000105083	chd5	96	82.319	ENSMICG00000017862	CHD5	96	79.932	Microcebus_murinus
ENSDARG00000105083	chd5	97	80.429	ENSMOCG00000011049	Chd5	96	78.394	Microtus_ochrogaster
ENSDARG00000105083	chd5	96	64.547	ENSMODG00000006294	CHD5	76	80.854	Monodelphis_domestica
ENSDARG00000105083	chd5	100	87.563	ENSMALG00000002831	chd5	98	85.422	Monopterus_albus
ENSDARG00000105083	chd5	97	78.813	MGP_CAROLIEiJ_G0026857	Chd5	96	77.465	Mus_caroli
ENSDARG00000105083	chd5	97	80.261	ENSMUSG00000005045	Chd5	96	78.738	Mus_musculus
ENSDARG00000105083	chd5	97	79.974	MGP_PahariEiJ_G0029205	Chd5	96	78.496	Mus_pahari
ENSDARG00000105083	chd5	97	80.261	MGP_SPRETEiJ_G0027850	Chd5	96	78.886	Mus_spretus
ENSDARG00000105083	chd5	97	78.019	ENSMPUG00000007122	CHD5	97	75.725	Mustela_putorius_furo
ENSDARG00000105083	chd5	99	76.776	ENSNGAG00000019812	Chd5	94	76.587	Nannospalax_galili
ENSDARG00000105083	chd5	97	76.977	ENSNLEG00000010320	CHD5	98	74.754	Nomascus_leucogenys
ENSDARG00000105083	chd5	90	74.550	ENSOPRG00000004304	CHD5	85	74.084	Ochotona_princeps
ENSDARG00000105083	chd5	97	81.197	ENSODEG00000010262	CHD5	98	78.875	Octodon_degus
ENSDARG00000105083	chd5	100	85.374	ENSONIG00000000619	chd5	98	82.810	Oreochromis_niloticus
ENSDARG00000105083	chd5	100	66.356	ENSOANG00000001819	CHD5	97	66.561	Ornithorhynchus_anatinus
ENSDARG00000105083	chd5	97	78.937	ENSOGAG00000005703	CHD5	96	76.178	Otolemur_garnettii
ENSDARG00000105083	chd5	95	77.438	ENSOARG00000013425	CHD5	95	76.019	Ovis_aries
ENSDARG00000105083	chd5	97	79.031	ENSPPAG00000034048	CHD5	98	76.736	Pan_paniscus
ENSDARG00000105083	chd5	97	78.431	ENSPPRG00000009453	CHD5	96	76.663	Panthera_pardus
ENSDARG00000105083	chd5	97	70.595	ENSPTIG00000013926	CHD5	97	71.699	Panthera_tigris_altaica
ENSDARG00000105083	chd5	97	79.031	ENSPTRG00000000075	CHD5	96	76.736	Pan_troglodytes
ENSDARG00000105083	chd5	98	78.365	ENSPANG00000006765	CHD5	96	77.188	Papio_anubis
ENSDARG00000105083	chd5	95	84.441	ENSPKIG00000004282	chd5	94	90.123	Paramormyrops_kingsleyae
ENSDARG00000105083	chd5	97	73.203	ENSPSIG00000006414	CHD5	99	71.719	Pelodiscus_sinensis
ENSDARG00000105083	chd5	58	86.966	ENSPEMG00000014799	Chd5	97	81.854	Peromyscus_maniculatus_bairdii
ENSDARG00000105083	chd5	100	79.785	ENSPCIG00000028310	CHD5	94	78.138	Phascolarctos_cinereus
ENSDARG00000105083	chd5	88	97.436	ENSPLAG00000005343	chd5	96	84.096	Poecilia_latipinna
ENSDARG00000105083	chd5	94	83.487	ENSPPYG00000001952	CHD5	96	81.830	Pongo_abelii
ENSDARG00000105083	chd5	97	79.669	ENSPCOG00000022930	CHD5	96	77.067	Propithecus_coquereli
ENSDARG00000105083	chd5	99	85.549	ENSPNYG00000003183	chd5	99	85.071	Pundamilia_nyererei
ENSDARG00000105083	chd5	97	78.662	ENSRNOG00000011268	Chd5	97	77.112	Rattus_norvegicus
ENSDARG00000105083	chd5	99	78.098	ENSRBIG00000032140	CHD5	99	75.545	Rhinopithecus_bieti
ENSDARG00000105083	chd5	98	78.689	ENSRROG00000041146	CHD5	96	76.927	Rhinopithecus_roxellana
ENSDARG00000105083	chd5	97	79.212	ENSSBOG00000001955	CHD5	99	78.877	Saimiri_boliviensis_boliviensis
ENSDARG00000105083	chd5	97	72.745	ENSSHAG00000018641	CHD5	99	71.466	Sarcophilus_harrisii
ENSDARG00000105083	chd5	100	86.604	ENSSFOG00015006296	chd5	99	84.010	Scleropages_formosus
ENSDARG00000105083	chd5	91	93.011	ENSSDUG00000017526	chd5	96	88.259	Seriola_dumerili
ENSDARG00000105083	chd5	88	88.235	ENSSPUG00000010622	CHD5	98	70.757	Sphenodon_punctatus
ENSDARG00000105083	chd5	97	78.675	ENSSSCG00000003366	CHD5	99	78.240	Sus_scrofa
ENSDARG00000105083	chd5	94	77.822	ENSTGUG00000002634	-	100	74.650	Taeniopygia_guttata
ENSDARG00000105083	chd5	51	87.094	ENSTNIG00000004346	chd5	99	86.686	Tetraodon_nigroviridis
ENSDARG00000105083	chd5	97	79.703	ENSTTRG00000010468	CHD5	96	77.438	Tursiops_truncatus
ENSDARG00000105083	chd5	100	79.217	ENSUAMG00000024509	CHD5	95	90.291	Ursus_americanus
ENSDARG00000105083	chd5	97	76.542	ENSUMAG00000024173	CHD5	98	74.194	Ursus_maritimus
ENSDARG00000105083	chd5	97	80.013	ENSVVUG00000026480	CHD5	93	91.133	Vulpes_vulpes
ENSDARG00000105083	chd5	97	77.850	ENSXETG00000002904	chd5	99	72.885	Xenopus_tropicalis
ENSDARG00000105083	chd5	55	88.370	ENSXCOG00000014202	chd5	99	84.711	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006325	chromatin organization	-	IEA	Process
GO:0007051	spindle organization	-	IEA	Process
GO:0007098	centrosome cycle	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016581	NuRD complex	-	IEA	Component
GO:0043044	ATP-dependent chromatin remodeling	26092436.	IDA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0048703	embryonic viscerocranium morphogenesis	26092436.	IMP	Process
GO:0060322	head development	26092436.	IMP	Process