EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSDARG00000105177 (Gene tree)
Gene ID
321868
Gene Symbol
ilf3b
Alias
ilf3|wu:fb37d07|wu:fb94b02|zgc:77030
Full Name
interleukin enhancer binding factor 3b
Gene Type
protein_coding
Species
Danio_rerio
Status
confidence
Strand
Plus strand
Length
37082 bases
Position
chr3:13842554-13879635
Accession
ZDB-GENE-030131-587
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSDARP00000140809DZFPF07528.142.6e-9411
ENSDARP00000148432DZFPF07528.142.6e-9411
ENSDARP00000130355DZFPF07528.144.3e-3511
ENSDARP00000138304DZFPF07528.144.3e-2411
ENSDARP00000140809dsrmPF00035.261.4e-2412
ENSDARP00000140809dsrmPF00035.261.4e-2422
ENSDARP00000148432dsrmPF00035.261.4e-2412
ENSDARP00000148432dsrmPF00035.261.4e-2422
ENSDARP00000138361dsrmPF00035.264.9e-1411
ENSDARP00000132586dsrmPF00035.268.7e-1411
ENSDARP00000138304dsrmPF00035.263e-0911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionpreZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
28381614Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transitionZGA & embryo2017 Apr 5Despic VDOI: 10.1101/gr.215954.116
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSDART00000164872-729-ENSDARP00000138304243 (aa)-A0A0R4IPU4
ENSDART00000158068-780-ENSDARP00000130355218 (aa)-A0A0R4IBM8
ENSDART00000162451-1360-ENSDARP00000138361214 (aa)-A0A0R4IRK1
ENSDART00000162317-3305XM_005163739ENSDARP00000140809833 (aa)XP_005163796A0A0R4IUQ9
ENSDART00000165808-801-ENSDARP00000129964191 (aa)-A0A0R4IBR5
ENSDART00000168315-1124-ENSDARP00000132586308 (aa)-A0A0R4IHG8
ENSDART00000184342-5157-ENSDARP00000148432833 (aa)-A0A0R4IUQ9
Gene Model
Click here to download ENSDARG00000105177's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000105177's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSDARG00000105177ilf3b9352.451ENSDARG00000071683zfr25356.098
ENSDARG00000105177ilf3b9750.661ENSDARG00000021455strbp9851.553
ENSDARG00000105177ilf3b9554.645ENSDARG00000058660ilf3a9951.046
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSDARG00000105177ilf3b10075.124ENSG00000129351ILF39975.781Homo_sapiens
ENSDARG00000105177ilf3b10085.572ENSAPOG00000011438ilf3b9382.258Acanthochromis_polyacanthus
ENSDARG00000105177ilf3b10075.124ENSAMEG00000011152ILF39960.478Ailuropoda_melanoleuca
ENSDARG00000105177ilf3b10083.085ENSACIG00000020521ilf3b9081.553Amphilophus_citrinellus
ENSDARG00000105177ilf3b10085.572ENSAOCG00000000579ilf3b9972.905Amphiprion_ocellaris
ENSDARG00000105177ilf3b10085.572ENSAPEG00000017659ilf3b9972.905Amphiprion_percula
ENSDARG00000105177ilf3b10084.577ENSATEG00000012555ilf3b9082.051Anabas_testudineus
ENSDARG00000105177ilf3b8184.577ENSATEG00000012690ilf3b8777.966Anabas_testudineus
ENSDARG00000105177ilf3b10074.129ENSACAG00000015632ILF39561.844Anolis_carolinensis
ENSDARG00000105177ilf3b10074.627ENSANAG00000026889ILF39272.222Aotus_nancymaae
ENSDARG00000105177ilf3b10084.080ENSACLG00000001608ilf3b10072.644Astatotilapia_calliptera
ENSDARG00000105177ilf3b10085.572ENSAMXG00000020710ilf3b10078.100Astyanax_mexicanus
ENSDARG00000105177ilf3b10075.622ENSBTAG00000040076ILF39072.111Bos_taurus
ENSDARG00000105177ilf3b10074.627ENSCJAG00000006374ILF39272.025Callithrix_jacchus
ENSDARG00000105177ilf3b10075.124ENSCAFG00000017691ILF39960.613Canis_familiaris
ENSDARG00000105177ilf3b10075.124ENSCAFG00020024492ILF39172.154Canis_lupus_dingo
ENSDARG00000105177ilf3b10075.622ENSCHIG00000024731ILF310060.523Capra_hircus
ENSDARG00000105177ilf3b10075.622ENSTSYG00000000317ILF39171.759Carlito_syrichta
ENSDARG00000105177ilf3b10075.124ENSCAPG00000009767ILF39072.473Cavia_aperea
ENSDARG00000105177ilf3b10075.124ENSCPOG00000013726ILF38972.403Cavia_porcellus
ENSDARG00000105177ilf3b10074.627ENSCCAG00000019834ILF39272.222Cebus_capucinus
ENSDARG00000105177ilf3b10075.124ENSCATG00000023258ILF39172.308Cercocebus_atys
ENSDARG00000105177ilf3b10075.124ENSCLAG00000011537ILF39072.628Chinchilla_lanigera
ENSDARG00000105177ilf3b10075.124ENSCSAG00000006983ILF39172.308Chlorocebus_sabaeus
ENSDARG00000105177ilf3b9757.870ENSCHOG00000002009ILF37158.750Choloepus_hoffmanni
ENSDARG00000105177ilf3b10074.129ENSCPBG00000010274ILF38673.252Chrysemys_picta_bellii
ENSDARG00000105177ilf3b10075.124ENSCANG00000014037ILF39272.377Colobus_angolensis_palliatus
ENSDARG00000105177ilf3b10075.124ENSCGRG00001021577Ilf39072.403Cricetulus_griseus_chok1gshd
ENSDARG00000105177ilf3b10075.124ENSCGRG00000005960Ilf38972.334Cricetulus_griseus_crigri
ENSDARG00000105177ilf3b10080.597ENSCSEG00000016231ilf3b10068.535Cynoglossus_semilaevis
ENSDARG00000105177ilf3b10084.577ENSCVAG00000007840ilf3b9179.745Cyprinodon_variegatus
ENSDARG00000105177ilf3b10074.627ENSDNOG00000002518ILF39463.291Dasypus_novemcinctus
ENSDARG00000105177ilf3b10075.124ENSDORG00000015231Ilf39072.291Dipodomys_ordii
ENSDARG00000105177ilf3b8175.124ENSETEG00000015741ILF39259.325Echinops_telfairi
ENSDARG00000105177ilf3b10075.622ENSEASG00005008476ILF39072.093Equus_asinus_asinus
ENSDARG00000105177ilf3b10075.622ENSECAG00000017640ILF39462.369Equus_caballus
ENSDARG00000105177ilf3b10086.567ENSELUG00000000372ilf3b9283.386Esox_lucius
ENSDARG00000105177ilf3b10075.124ENSFCAG00000004887ILF39172.601Felis_catus
ENSDARG00000105177ilf3b9771.101ENSFALG00000013695ILF39854.820Ficedula_albicollis
ENSDARG00000105177ilf3b10074.627ENSFDAG00000012706ILF39071.851Fukomys_damarensis
ENSDARG00000105177ilf3b10082.090ENSFHEG00000009438ilf3b9179.745Fundulus_heteroclitus
ENSDARG00000105177ilf3b9679.167ENSGMOG00000018300ilf3b10077.778Gadus_morhua
ENSDARG00000105177ilf3b10077.419ENSGALG00000030351ILF38567.984Gallus_gallus
ENSDARG00000105177ilf3b10085.075ENSGAFG00000014161ilf3b10070.692Gambusia_affinis
ENSDARG00000105177ilf3b10082.587ENSGACG00000006270ilf3b10081.224Gasterosteus_aculeatus
ENSDARG00000105177ilf3b10074.129ENSGAGG00000001571ILF39071.121Gopherus_agassizii
ENSDARG00000105177ilf3b10075.124ENSGGOG00000004144ILF39172.308Gorilla_gorilla
ENSDARG00000105177ilf3b10084.080ENSHBUG00000019941ilf3b10072.644Haplochromis_burtoni
ENSDARG00000105177ilf3b9868.950ENSHGLG00000018011-9064.174Heterocephalus_glaber_female
ENSDARG00000105177ilf3b10074.627ENSHGLG00000019494-9072.006Heterocephalus_glaber_female
ENSDARG00000105177ilf3b9865.138ENSHGLG00000015334-9258.814Heterocephalus_glaber_female
ENSDARG00000105177ilf3b9957.377ENSHGLG00000017093-8955.748Heterocephalus_glaber_female
ENSDARG00000105177ilf3b10056.055ENSHGLG00100011979-8358.320Heterocephalus_glaber_male
ENSDARG00000105177ilf3b9868.837ENSHGLG00100003442-6965.481Heterocephalus_glaber_male
ENSDARG00000105177ilf3b10074.627ENSHGLG00100007068-9071.851Heterocephalus_glaber_male
ENSDARG00000105177ilf3b9953.744ENSHGLG00100016819-8669.565Heterocephalus_glaber_male
ENSDARG00000105177ilf3b9865.138ENSHGLG00100007409-9257.098Heterocephalus_glaber_male
ENSDARG00000105177ilf3b10077.114ENSHCOG00000019528ilf3b10067.783Hippocampus_comes
ENSDARG00000105177ilf3b10086.070ENSIPUG00000007610ilf310076.218Ictalurus_punctatus
ENSDARG00000105177ilf3b10075.124ENSSTOG00000007786ILF39072.473Ictidomys_tridecemlineatus
ENSDARG00000105177ilf3b10074.627ENSJJAG00000013051-9072.274Jaculus_jaculus
ENSDARG00000105177ilf3b10066.304ENSJJAG00000020378-6565.067Jaculus_jaculus
ENSDARG00000105177ilf3b10082.587ENSKMAG00000010770ilf3b9181.081Kryptolebias_marmoratus
ENSDARG00000105177ilf3b10083.582ENSLBEG00000023354ilf3b9079.779Labrus_bergylta
ENSDARG00000105177ilf3b8163.682ENSLBEG00000002708-9462.287Labrus_bergylta
ENSDARG00000105177ilf3b10080.597ENSLACG00000003810ILF310060.305Latimeria_chalumnae
ENSDARG00000105177ilf3b10086.070ENSLOCG00000008430ilf3b10069.977Lepisosteus_oculatus
ENSDARG00000105177ilf3b10075.622ENSLAFG00000021667ILF39960.240Loxodonta_africana
ENSDARG00000105177ilf3b10075.124ENSMFAG00000039557ILF39172.308Macaca_fascicularis
ENSDARG00000105177ilf3b10075.124ENSMMUG00000014673ILF39172.308Macaca_mulatta
ENSDARG00000105177ilf3b10075.124ENSMNEG00000042707ILF39172.308Macaca_nemestrina
ENSDARG00000105177ilf3b10075.124ENSMLEG00000042847ILF39172.784Mandrillus_leucophaeus
ENSDARG00000105177ilf3b10083.582ENSMAMG00000010601ilf3b9482.297Mastacembelus_armatus
ENSDARG00000105177ilf3b10084.080ENSMZEG00005002368ilf3b9181.575Maylandia_zebra
ENSDARG00000105177ilf3b10075.622ENSMAUG00000020405Ilf39461.556Mesocricetus_auratus
ENSDARG00000105177ilf3b10074.627ENSMICG00000009694ILF39271.713Microcebus_murinus
ENSDARG00000105177ilf3b10076.119ENSMOCG00000018740Ilf39072.826Microtus_ochrogaster
ENSDARG00000105177ilf3b9880.841ENSMMOG00000006290ilf3b9173.906Mola_mola
ENSDARG00000105177ilf3b10074.129ENSMODG00000005911ILF39958.779Monodelphis_domestica
ENSDARG00000105177ilf3b10085.075ENSMALG00000002228ilf3b9082.643Monopterus_albus
ENSDARG00000105177ilf3b10075.622MGP_CAROLIEiJ_G0031871Ilf39072.713Mus_caroli
ENSDARG00000105177ilf3b10075.622ENSMUSG00000032178Ilf39770.552Mus_musculus
ENSDARG00000105177ilf3b10075.622MGP_PahariEiJ_G0014737Ilf39072.713Mus_pahari
ENSDARG00000105177ilf3b10075.622MGP_SPRETEiJ_G0032995Ilf39072.713Mus_spretus
ENSDARG00000105177ilf3b10075.124ENSMPUG00000006205ILF39960.483Mustela_putorius_furo
ENSDARG00000105177ilf3b10074.627ENSMLUG00000008365ILF39960.131Myotis_lucifugus
ENSDARG00000105177ilf3b10074.627ENSNGAG00000009786-9072.473Nannospalax_galili
ENSDARG00000105177ilf3b10066.667ENSNGAG00000015146-8663.060Nannospalax_galili
ENSDARG00000105177ilf3b8184.080ENSNBRG00000010095ilf3b9167.254Neolamprologus_brichardi
ENSDARG00000105177ilf3b9977.368ENSNBRG00000010130-7376.562Neolamprologus_brichardi
ENSDARG00000105177ilf3b9774.093ENSNLEG00000012290ILF39271.473Nomascus_leucogenys
ENSDARG00000105177ilf3b8677.551ENSMEUG00000012684ILF38266.667Notamacropus_eugenii
ENSDARG00000105177ilf3b10079.104ENSOPRG00000014990ILF39561.468Ochotona_princeps
ENSDARG00000105177ilf3b9775.000ENSODEG00000015951ILF39365.812Octodon_degus
ENSDARG00000105177ilf3b10084.080ENSONIG00000008081ilf3b10071.724Oreochromis_niloticus
ENSDARG00000105177ilf3b5671.533ENSOANG00000028346-9472.464Ornithorhynchus_anatinus
ENSDARG00000105177ilf3b10074.627ENSOCUG00000013990ILF39462.688Oryctolagus_cuniculus
ENSDARG00000105177ilf3b10084.946ENSORLG00000016379ilf3b9178.922Oryzias_latipes
ENSDARG00000105177ilf3b10083.871ENSORLG00020022000ilf3b10069.419Oryzias_latipes_hni
ENSDARG00000105177ilf3b10084.946ENSORLG00015015108ilf3b9179.239Oryzias_latipes_hsok
ENSDARG00000105177ilf3b10083.871ENSOMEG00000017273ilf3b9179.840Oryzias_melastigma
ENSDARG00000105177ilf3b10067.204ENSOGAG00000030527-9158.713Otolemur_garnettii
ENSDARG00000105177ilf3b10075.124ENSOGAG00000015244-9960.784Otolemur_garnettii
ENSDARG00000105177ilf3b10075.622ENSOARG00000016982ILF39960.812Ovis_aries
ENSDARG00000105177ilf3b10075.124ENSPPAG00000040547ILF39172.308Pan_paniscus
ENSDARG00000105177ilf3b10075.124ENSPPRG00000021486ILF39272.473Panthera_pardus
ENSDARG00000105177ilf3b10075.124ENSPTIG00000021627ILF39172.154Panthera_tigris_altaica
ENSDARG00000105177ilf3b10075.124ENSPTRG00000010480ILF39172.308Pan_troglodytes
ENSDARG00000105177ilf3b10075.124ENSPANG00000014995ILF39272.334Papio_anubis
ENSDARG00000105177ilf3b10084.000ENSPKIG00000007019ilf3b9278.268Paramormyrops_kingsleyae
ENSDARG00000105177ilf3b9970.000ENSPKIG00000008409-10070.000Paramormyrops_kingsleyae
ENSDARG00000105177ilf3b10074.129ENSPSIG00000008298ILF39557.610Pelodiscus_sinensis
ENSDARG00000105177ilf3b10079.412ENSPMGG00000001413ilf3b10068.611Periophthalmus_magnuspinnatus
ENSDARG00000105177ilf3b10075.622ENSPEMG00000000465-9072.403Peromyscus_maniculatus_bairdii
ENSDARG00000105177ilf3b10074.129ENSPCIG00000015447ILF39071.894Phascolarctos_cinereus
ENSDARG00000105177ilf3b10084.577ENSPFOG00000001014ilf3b9280.671Poecilia_formosa
ENSDARG00000105177ilf3b10084.577ENSPLAG00000018261ilf3b9280.671Poecilia_latipinna
ENSDARG00000105177ilf3b10084.577ENSPMEG00000013635ilf3b9280.671Poecilia_mexicana
ENSDARG00000105177ilf3b10084.577ENSPREG00000013654ilf3b9280.511Poecilia_reticulata
ENSDARG00000105177ilf3b10075.124ENSPPYG00000029648ILF39462.019Pongo_abelii
ENSDARG00000105177ilf3b10075.124ENSPCAG00000003315ILF37172.713Procavia_capensis
ENSDARG00000105177ilf3b10075.124ENSPCOG00000019611ILF39272.446Propithecus_coquereli
ENSDARG00000105177ilf3b10077.838ENSPVAG00000012152ILF39170.511Pteropus_vampyrus
ENSDARG00000105177ilf3b10084.080ENSPNYG00000002063ilf3b9181.417Pundamilia_nyererei
ENSDARG00000105177ilf3b10085.572ENSPNAG00000008276ilf3b10077.278Pygocentrus_nattereri
ENSDARG00000105177ilf3b10075.622ENSRNOG00000022741Ilf39461.601Rattus_norvegicus
ENSDARG00000105177ilf3b10075.124ENSRBIG00000038846ILF39963.771Rhinopithecus_bieti
ENSDARG00000105177ilf3b10075.124ENSRROG00000031702ILF39172.136Rhinopithecus_roxellana
ENSDARG00000105177ilf3b10074.627ENSSBOG00000027756ILF39272.222Saimiri_boliviensis_boliviensis
ENSDARG00000105177ilf3b10074.129ENSSHAG00000001712ILF39161.628Sarcophilus_harrisii
ENSDARG00000105177ilf3b10083.085ENSSFOG00015014881ilf3b9378.660Scleropages_formosus
ENSDARG00000105177ilf3b10081.592ENSSFOG00015008720-9266.705Scleropages_formosus
ENSDARG00000105177ilf3b10084.577ENSSMAG00000002392ilf3b9181.201Scophthalmus_maximus
ENSDARG00000105177ilf3b10085.075ENSSDUG00000008684ilf3b10072.905Seriola_dumerili
ENSDARG00000105177ilf3b10085.075ENSSLDG00000017171ilf3b10072.957Seriola_lalandi_dorsalis
ENSDARG00000105177ilf3b9972.848ENSSARG00000007303ILF36375.502Sorex_araneus
ENSDARG00000105177ilf3b10085.572ENSSPAG00000018249ilf3b9972.299Stegastes_partitus
ENSDARG00000105177ilf3b10075.124ENSSSCG00000013638ILF38674.754Sus_scrofa
ENSDARG00000105177ilf3b10074.129ENSTGUG00000013676ILF39965.464Taeniopygia_guttata
ENSDARG00000105177ilf3b10080.597ENSTRUG00000010961ilf3b8877.833Takifugu_rubripes
ENSDARG00000105177ilf3b9679.167ENSTNIG00000008329ilf3b10056.078Tetraodon_nigroviridis
ENSDARG00000105177ilf3b9678.919ENSTTRG00000016632ILF39952.345Tursiops_truncatus
ENSDARG00000105177ilf3b10075.124ENSUAMG00000017664ILF39172.222Ursus_americanus
ENSDARG00000105177ilf3b10075.124ENSUMAG00000025049ILF39072.473Ursus_maritimus
ENSDARG00000105177ilf3b9759.259ENSVPAG00000009089ILF39059.074Vicugna_pacos
ENSDARG00000105177ilf3b10075.124ENSVVUG00000017504ILF39960.613Vulpes_vulpes
ENSDARG00000105177ilf3b9774.302ENSXETG00000011651ilf310054.357Xenopus_tropicalis
ENSDARG00000105177ilf3b10084.080ENSXMAG00000008854ilf3b10070.843Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0003725double-stranded RNA binding21873635.IBAFunction
GO:0003725double-stranded RNA binding-IEAFunction
GO:0003727single-stranded RNA binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-IEAComponent
GO:0005730nucleolus-IEAComponent
GO:0005737cytoplasm-IEAComponent
GO:0017091AU-rich element binding-ISSFunction
GO:0051607defense response to virus-IEAProcess

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