EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000105293 (Gene tree)
Gene ID: 321872
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 4
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 9588 bases
Position: chr19:13410903-13420490
Accession: ZDB-GENE-030131-591
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000131436	RRM_1	PF00076.22	6.5e-32	1	2
ENSDARP00000131436	RRM_1	PF00076.22	6.5e-32	2	2
ENSDARP00000133139	RRM_1	PF00076.22	4.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000165033	-	1853	-	ENSDARP00000131436	366 (aa)	-	Q802Y1
ENSDART00000160531	-	1953	-	-	- (aa)	-	-
ENSDART00000168672	-	1124	-	ENSDARP00000133139	106 (aa)	-	A0A0R4IHP9

Gene Model

Click here to download ENSDARG00000105293's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03040	Spliceosome	KEGG
dre05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000105293's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000105293	srsf4	75	32.558	ENSDARG00000061478	igf2bp1	74	32.558
ENSDARG00000105293	srsf4	64	70.588	ENSDARG00000029818	srsf5a	93	58.871
ENSDARG00000105293	srsf4	70	44.156	ENSDARG00000035325	srsf7a	82	44.156
ENSDARG00000105293	srsf4	63	51.389	ENSDARG00000057691	srsf1a	91	45.198
ENSDARG00000105293	srsf4	68	76.389	ENSDARG00000016783	srsf6b	80	76.316
ENSDARG00000105293	srsf4	64	67.647	ENSDARG00000027734	srsf5b	88	56.800
ENSDARG00000105293	srsf4	70	45.455	ENSDARG00000101057	srsf7b	51	45.455
ENSDARG00000105293	srsf4	64	32.895	ENSDARG00000103672	cirbpa	51	31.915
ENSDARG00000105293	srsf4	69	46.053	ENSDARG00000025397	srsf3a	57	45.455
ENSDARG00000105293	srsf4	62	52.113	ENSDARG00000017843	srsf1b	67	45.930
ENSDARG00000105293	srsf4	52	48.333	ENSDARG00000008097	srsf9	73	43.158
ENSDARG00000105293	srsf4	69	46.053	ENSDARG00000100815	srsf3a	57	45.455
ENSDARG00000105293	srsf4	70	45.455	ENSDARG00000059360	srsf3b	62	45.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000105293	srsf4	79	83.333	ENSG00000116350	SRSF4	73	69.697	Homo_sapiens
ENSDARG00000105293	srsf4	66	94.286	ENSAPOG00000020244	srsf4	98	62.032	Acanthochromis_polyacanthus
ENSDARG00000105293	srsf4	80	74.118	ENSAPOG00000023399	-	60	71.429	Acanthochromis_polyacanthus
ENSDARG00000105293	srsf4	72	90.789	ENSACIG00000018649	srsf4	90	83.065	Amphilophus_citrinellus
ENSDARG00000105293	srsf4	66	94.286	ENSAOCG00000005997	srsf4	92	83.636	Amphiprion_ocellaris
ENSDARG00000105293	srsf4	66	94.286	ENSAPEG00000020870	-	71	83.516	Amphiprion_percula
ENSDARG00000105293	srsf4	63	94.030	ENSATEG00000005680	srsf4	60	84.066	Anabas_testudineus
ENSDARG00000105293	srsf4	72	75.000	ENSACLG00000021269	-	51	68.421	Astatotilapia_calliptera
ENSDARG00000105293	srsf4	72	92.105	ENSACLG00000003395	srsf4	98	85.915	Astatotilapia_calliptera
ENSDARG00000105293	srsf4	82	86.207	ENSAMXG00000034811	srsf4	98	83.099	Astyanax_mexicanus
ENSDARG00000105293	srsf4	66	61.429	WBGene00004698	rsp-1	97	46.528	Caenorhabditis_elegans
ENSDARG00000105293	srsf4	79	65.476	ENSCING00000012370	-	68	58.081	Ciona_intestinalis
ENSDARG00000105293	srsf4	73	66.234	ENSCING00000011362	-	65	56.757	Ciona_intestinalis
ENSDARG00000105293	srsf4	74	64.103	ENSCING00000020631	-	80	57.436	Ciona_intestinalis
ENSDARG00000105293	srsf4	71	62.667	ENSCING00000024718	-	56	55.440	Ciona_intestinalis
ENSDARG00000105293	srsf4	65	72.464	ENSCSAVG00000002581	-	66	65.730	Ciona_savignyi
ENSDARG00000105293	srsf4	72	92.105	ENSCSEG00000010058	srsf4	75	80.645	Cynoglossus_semilaevis
ENSDARG00000105293	srsf4	70	66.216	FBgn0004587	B52	95	59.690	Drosophila_melanogaster
ENSDARG00000105293	srsf4	80	65.517	ENSEBUG00000001681	srsf4	67	59.218	Eptatretus_burgeri
ENSDARG00000105293	srsf4	72	76.316	ENSELUG00000017551	srsf4	93	71.538	Esox_lucius
ENSDARG00000105293	srsf4	86	82.418	ENSFHEG00000007472	srsf4	98	82.418	Fundulus_heteroclitus
ENSDARG00000105293	srsf4	74	91.026	ENSGMOG00000012906	srsf4	57	87.363	Gadus_morhua
ENSDARG00000105293	srsf4	79	89.286	ENSGAFG00000018496	srsf4	65	78.889	Gambusia_affinis
ENSDARG00000105293	srsf4	90	80.000	ENSGACG00000002389	srsf4	56	86.264	Gasterosteus_aculeatus
ENSDARG00000105293	srsf4	72	75.000	ENSHBUG00000011326	-	51	68.421	Haplochromis_burtoni
ENSDARG00000105293	srsf4	72	92.105	ENSHBUG00000016897	-	71	92.308	Haplochromis_burtoni
ENSDARG00000105293	srsf4	78	92.424	ENSHCOG00000012540	srsf4	96	92.424	Hippocampus_comes
ENSDARG00000105293	srsf4	80	88.235	ENSKMAG00000013631	srsf4	82	75.238	Kryptolebias_marmoratus
ENSDARG00000105293	srsf4	69	91.781	ENSLBEG00000017163	-	72	92.308	Labrus_bergylta
ENSDARG00000105293	srsf4	68	76.389	ENSLOCG00000001442	-	50	70.213	Lepisosteus_oculatus
ENSDARG00000105293	srsf4	74	92.308	ENSMAMG00000004888	srsf4	98	85.915	Mastacembelus_armatus
ENSDARG00000105293	srsf4	72	92.105	ENSMZEG00005026275	srsf4	99	65.067	Maylandia_zebra
ENSDARG00000105293	srsf4	72	92.105	ENSMZEG00005025078	-	70	92.308	Maylandia_zebra
ENSDARG00000105293	srsf4	77	86.747	ENSMMOG00000013653	srsf4	96	85.915	Mola_mola
ENSDARG00000105293	srsf4	79	83.333	ENSMODG00000011052	SRSF4	56	82.418	Monodelphis_domestica
ENSDARG00000105293	srsf4	82	70.115	ENSMALG00000010062	-	91	70.115	Monopterus_albus
ENSDARG00000105293	srsf4	81	88.372	ENSMALG00000013392	srsf4	91	85.915	Monopterus_albus
ENSDARG00000105293	srsf4	72	92.105	ENSNBRG00000014840	-	73	92.308	Neolamprologus_brichardi
ENSDARG00000105293	srsf4	80	62.353	ENSNLEG00000030787	-	62	65.385	Nomascus_leucogenys
ENSDARG00000105293	srsf4	66	94.286	ENSONIG00000013730	srsf4	99	62.148	Oreochromis_niloticus
ENSDARG00000105293	srsf4	66	94.286	ENSORLG00000028783	-	78	86.047	Oryzias_latipes
ENSDARG00000105293	srsf4	66	94.286	ENSORLG00020016052	srsf4	66	86.813	Oryzias_latipes_hni
ENSDARG00000105293	srsf4	78	88.406	ENSORLG00015007566	srsf4	98	89.706	Oryzias_latipes_hsok
ENSDARG00000105293	srsf4	66	94.286	ENSOMEG00000005541	srsf4	51	86.813	Oryzias_melastigma
ENSDARG00000105293	srsf4	72	93.421	ENSPMGG00000013436	srsf4	95	81.102	Periophthalmus_magnuspinnatus
ENSDARG00000105293	srsf4	72	67.105	ENSPMAG00000009397	srsf4	68	63.934	Petromyzon_marinus
ENSDARG00000105293	srsf4	79	89.286	ENSPLAG00000008812	srsf4	78	89.855	Poecilia_latipinna
ENSDARG00000105293	srsf4	80	88.235	ENSPMEG00000023638	srsf4	97	89.855	Poecilia_mexicana
ENSDARG00000105293	srsf4	79	89.286	ENSPREG00000009639	srsf4	51	87.363	Poecilia_reticulata
ENSDARG00000105293	srsf4	66	94.286	ENSPNYG00000003796	srsf4	56	87.912	Pundamilia_nyererei
ENSDARG00000105293	srsf4	74	93.590	ENSPNAG00000023844	srsf4	54	87.912	Pygocentrus_nattereri
ENSDARG00000105293	srsf4	50	77.358	ENSSHAG00000012407	SRSF4	51	80.132	Sarcophilus_harrisii
ENSDARG00000105293	srsf4	79	89.286	ENSSFOG00015020292	srsf4	76	88.889	Scleropages_formosus
ENSDARG00000105293	srsf4	66	94.286	ENSSMAG00000001707	srsf4	50	83.784	Scophthalmus_maximus
ENSDARG00000105293	srsf4	50	73.770	ENSSLDG00000009745	srsf4	62	72.678	Seriola_lalandi_dorsalis
ENSDARG00000105293	srsf4	72	81.579	ENSSPUG00000019124	-	85	81.579	Sphenodon_punctatus
ENSDARG00000105293	srsf4	90	82.105	ENSSPAG00000014538	srsf4	83	82.258	Stegastes_partitus
ENSDARG00000105293	srsf4	72	90.789	ENSTRUG00000011891	srsf4	82	63.175	Takifugu_rubripes
ENSDARG00000105293	srsf4	74	91.026	ENSTNIG00000005573	srsf4	83	65.528	Tetraodon_nigroviridis
ENSDARG00000105293	srsf4	80	88.235	ENSXCOG00000018826	srsf4	89	83.898	Xiphophorus_couchianus
ENSDARG00000105293	srsf4	72	75.000	ENSXCOG00000003212	-	55	68.783	Xiphophorus_couchianus
ENSDARG00000105293	srsf4	80	87.059	ENSXMAG00000021549	-	66	92.308	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0045292	mRNA cis splicing, via spliceosome	21873635.	IBA	Process