EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000107511 (Gene tree)
Gene ID: 100537552
Gene Symbol: lyn
Alias: zgc:92124
Full Name: LYN proto-oncogene%2C Src family tyrosine kinase
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 39719 bases
Position: chr2:27611956-27651674
Accession: ZDB-GENE-040912-7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000116188	Methyltransf_15	PF09445.10	4.8e-43	1	1
ENSDARP00000144467	Methyltransf_15	PF09445.10	1.1e-41	1	1
ENSDARP00000116188	UPF0020	PF01170.18	1.6e-07	1	1
ENSDARP00000144467	UPF0020	PF01170.18	5.5e-06	1	1
ENSDARP00000116188	Met_10	PF02475.16	8.1e-07	1	1
ENSDARP00000144467	Met_10	PF02475.16	1.1e-05	1	1
ENSDARP00000116188	Methyltransf_31	PF13847.6	1.1e-07	1	1
ENSDARP00000144467	Methyltransf_31	PF13847.6	9.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000177402	-	4511	XM_003197865	ENSDARP00000144467	800 (aa)	XP_003197913	A0A286YB74
ENSDART00000144826	-	760	-	ENSDARP00000116188	181 (aa)	-	F1R4S6

Gene Model

Click here to download ENSDARG00000107511's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000107511's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000107511	lyn	99	73.333	ENSG00000137574	TGS1	98	38.550	Homo_sapiens
ENSDARG00000107511	lyn	82	78.523	ENSAPOG00000004321	-	99	42.282	Acanthochromis_polyacanthus
ENSDARG00000107511	lyn	99	72.928	ENSAMEG00000001781	TGS1	98	37.428	Ailuropoda_melanoleuca
ENSDARG00000107511	lyn	99	81.768	ENSAOCG00000022799	lyn	99	43.503	Amphiprion_ocellaris
ENSDARG00000107511	lyn	99	81.768	ENSAPEG00000019723	TGS1	96	45.652	Amphiprion_percula
ENSDARG00000107511	lyn	69	75.397	ENSATEG00000005927	lyn	92	41.448	Anabas_testudineus
ENSDARG00000107511	lyn	81	66.892	ENSAPLG00000006073	-	94	39.793	Anas_platyrhynchos
ENSDARG00000107511	lyn	99	72.778	ENSACAG00000017988	TGS1	90	38.084	Anolis_carolinensis
ENSDARG00000107511	lyn	99	69.444	ENSANAG00000035525	TGS1	98	37.170	Aotus_nancymaae
ENSDARG00000107511	lyn	99	81.111	ENSACLG00000000261	lyn	99	44.873	Astatotilapia_calliptera
ENSDARG00000107511	lyn	99	85.000	ENSAMXG00000014086	lyn	99	54.337	Astyanax_mexicanus
ENSDARG00000107511	lyn	99	71.667	ENSBTAG00000005898	TGS1	98	38.259	Bos_taurus
ENSDARG00000107511	lyn	99	73.333	ENSCJAG00000016657	TGS1	97	38.337	Callithrix_jacchus
ENSDARG00000107511	lyn	99	72.928	ENSCAFG00000007011	TGS1	98	37.471	Canis_familiaris
ENSDARG00000107511	lyn	99	68.889	ENSCAFG00020015485	TGS1	98	36.594	Canis_lupus_dingo
ENSDARG00000107511	lyn	99	71.667	ENSCHIG00000013976	TGS1	98	38.347	Capra_hircus
ENSDARG00000107511	lyn	99	73.333	ENSTSYG00000000171	TGS1	98	38.717	Carlito_syrichta
ENSDARG00000107511	lyn	99	71.667	ENSCAPG00000013732	TGS1	79	41.456	Cavia_aperea
ENSDARG00000107511	lyn	99	74.444	ENSCPOG00000009713	TGS1	98	39.205	Cavia_porcellus
ENSDARG00000107511	lyn	99	72.222	ENSCCAG00000030476	TGS1	97	38.364	Cebus_capucinus
ENSDARG00000107511	lyn	99	73.333	ENSCATG00000035375	TGS1	98	38.182	Cercocebus_atys
ENSDARG00000107511	lyn	99	73.333	ENSCLAG00000009468	TGS1	98	38.002	Chinchilla_lanigera
ENSDARG00000107511	lyn	70	65.625	ENSCSAG00000014611	TGS1	99	34.783	Chlorocebus_sabaeus
ENSDARG00000107511	lyn	99	61.667	ENSCHOG00000001462	TGS1	98	35.862	Choloepus_hoffmanni
ENSDARG00000107511	lyn	99	68.889	ENSCPBG00000004958	TGS1	98	38.608	Chrysemys_picta_bellii
ENSDARG00000107511	lyn	97	59.091	ENSCING00000013683	-	72	60.476	Ciona_intestinalis
ENSDARG00000107511	lyn	98	56.497	ENSCSAVG00000011154	-	69	56.808	Ciona_savignyi
ENSDARG00000107511	lyn	99	72.778	ENSCANG00000041389	TGS1	98	37.273	Colobus_angolensis_palliatus
ENSDARG00000107511	lyn	99	70.000	ENSCGRG00001019470	Tgs1	98	36.921	Cricetulus_griseus_chok1gshd
ENSDARG00000107511	lyn	99	72.222	ENSCGRG00000008981	Tgs1	98	37.544	Cricetulus_griseus_crigri
ENSDARG00000107511	lyn	99	72.928	ENSDNOG00000008353	TGS1	98	38.330	Dasypus_novemcinctus
ENSDARG00000107511	lyn	99	72.222	ENSDORG00000012484	Tgs1	98	38.184	Dipodomys_ordii
ENSDARG00000107511	lyn	81	66.438	ENSETEG00000005126	TGS1	71	35.902	Echinops_telfairi
ENSDARG00000107511	lyn	99	74.860	ENSEBUG00000013120	-	82	49.512	Eptatretus_burgeri
ENSDARG00000107511	lyn	68	66.667	ENSEASG00005016371	TGS1	93	35.165	Equus_asinus_asinus
ENSDARG00000107511	lyn	99	72.778	ENSECAG00000019399	TGS1	98	38.383	Equus_caballus
ENSDARG00000107511	lyn	64	84.375	ENSEEUG00000001735	TGS1	68	84.375	Erinaceus_europaeus
ENSDARG00000107511	lyn	99	86.111	ENSELUG00000012537	lyn	99	50.642	Esox_lucius
ENSDARG00000107511	lyn	99	72.778	ENSFCAG00000011478	TGS1	98	37.673	Felis_catus
ENSDARG00000107511	lyn	99	76.667	ENSFALG00000010249	TGS1	99	42.007	Ficedula_albicollis
ENSDARG00000107511	lyn	99	74.444	ENSFDAG00000011405	TGS1	98	38.813	Fukomys_damarensis
ENSDARG00000107511	lyn	81	78.912	ENSGMOG00000015087	-	95	78.571	Gadus_morhua
ENSDARG00000107511	lyn	99	74.444	ENSGALG00000015340	TGS1	97	39.712	Gallus_gallus
ENSDARG00000107511	lyn	99	81.215	ENSGACG00000014724	-	99	75.299	Gasterosteus_aculeatus
ENSDARG00000107511	lyn	99	70.000	ENSGAGG00000019590	TGS1	98	38.074	Gopherus_agassizii
ENSDARG00000107511	lyn	99	73.333	ENSGGOG00000008624	TGS1	98	38.506	Gorilla_gorilla
ENSDARG00000107511	lyn	73	72.932	ENSHBUG00000003518	lyn	100	43.594	Haplochromis_burtoni
ENSDARG00000107511	lyn	72	69.697	ENSHGLG00000000284	TGS1	83	90.625	Heterocephalus_glaber_female
ENSDARG00000107511	lyn	99	83.425	ENSHCOG00000014161	lyn	99	44.192	Hippocampus_comes
ENSDARG00000107511	lyn	99	84.444	ENSIPUG00000002294	tgs1	99	49.042	Ictalurus_punctatus
ENSDARG00000107511	lyn	99	73.333	ENSSTOG00000009597	TGS1	98	38.453	Ictidomys_tridecemlineatus
ENSDARG00000107511	lyn	99	68.333	ENSJJAG00000016239	Tgs1	98	38.921	Jaculus_jaculus
ENSDARG00000107511	lyn	99	79.444	ENSKMAG00000019371	-	99	41.149	Kryptolebias_marmoratus
ENSDARG00000107511	lyn	99	81.111	ENSLBEG00000027341	-	99	46.154	Labrus_bergylta
ENSDARG00000107511	lyn	99	68.333	ENSLACG00000008074	TGS1	98	37.860	Latimeria_chalumnae
ENSDARG00000107511	lyn	99	81.111	ENSLOCG00000005492	lyn	98	44.264	Lepisosteus_oculatus
ENSDARG00000107511	lyn	99	70.718	ENSLAFG00000015386	TGS1	98	36.848	Loxodonta_africana
ENSDARG00000107511	lyn	99	73.333	ENSMFAG00000029838	TGS1	98	38.002	Macaca_fascicularis
ENSDARG00000107511	lyn	99	68.889	ENSMMUG00000005478	TGS1	98	37.156	Macaca_mulatta
ENSDARG00000107511	lyn	99	73.333	ENSMNEG00000023719	TGS1	98	37.773	Macaca_nemestrina
ENSDARG00000107511	lyn	99	73.333	ENSMLEG00000034807	TGS1	98	38.182	Mandrillus_leucophaeus
ENSDARG00000107511	lyn	99	81.215	ENSMAMG00000009542	TGS1	99	42.407	Mastacembelus_armatus
ENSDARG00000107511	lyn	99	81.111	ENSMZEG00005015681	lyn	99	44.753	Maylandia_zebra
ENSDARG00000107511	lyn	99	71.823	ENSMGAG00000010966	TGS1	91	40.897	Meleagris_gallopavo
ENSDARG00000107511	lyn	99	73.333	ENSMAUG00000009875	Tgs1	98	38.921	Mesocricetus_auratus
ENSDARG00000107511	lyn	99	73.333	ENSMICG00000011199	TGS1	98	38.851	Microcebus_murinus
ENSDARG00000107511	lyn	99	72.778	ENSMOCG00000019560	Tgs1	98	36.716	Microtus_ochrogaster
ENSDARG00000107511	lyn	99	72.973	ENSMMOG00000021495	lyn	74	74.886	Mola_mola
ENSDARG00000107511	lyn	99	74.444	ENSMODG00000009174	TGS1	87	43.597	Monodelphis_domestica
ENSDARG00000107511	lyn	99	82.320	ENSMALG00000021440	lyn	99	46.400	Monopterus_albus
ENSDARG00000107511	lyn	99	72.778	MGP_CAROLIEiJ_G0025779	-	97	37.340	Mus_caroli
ENSDARG00000107511	lyn	99	61.667	MGP_CAROLIEiJ_G0025780	-	96	33.914	Mus_caroli
ENSDARG00000107511	lyn	99	72.778	ENSMUSG00000028233	Tgs1	97	36.860	Mus_musculus
ENSDARG00000107511	lyn	99	61.667	MGP_PahariEiJ_G0023902	-	96	34.177	Mus_pahari
ENSDARG00000107511	lyn	99	72.778	MGP_PahariEiJ_G0023901	-	97	37.907	Mus_pahari
ENSDARG00000107511	lyn	99	61.667	MGP_SPRETEiJ_G0026726	-	62	65.116	Mus_spretus
ENSDARG00000107511	lyn	99	72.778	MGP_SPRETEiJ_G0026727	-	97	37.718	Mus_spretus
ENSDARG00000107511	lyn	68	66.667	ENSMPUG00000010475	TGS1	98	33.869	Mustela_putorius_furo
ENSDARG00000107511	lyn	99	72.376	ENSMLUG00000014857	TGS1	98	37.844	Myotis_lucifugus
ENSDARG00000107511	lyn	99	73.333	ENSNGAG00000019532	Tgs1	98	38.780	Nannospalax_galili
ENSDARG00000107511	lyn	99	73.333	ENSNLEG00000001101	TGS1	98	38.312	Nomascus_leucogenys
ENSDARG00000107511	lyn	99	74.444	ENSMEUG00000001697	TGS1	95	37.422	Notamacropus_eugenii
ENSDARG00000107511	lyn	81	66.438	ENSODEG00000002948	TGS1	80	39.062	Octodon_degus
ENSDARG00000107511	lyn	99	79.006	ENSONIG00000006339	lyn	99	42.819	Oreochromis_niloticus
ENSDARG00000107511	lyn	99	73.333	ENSOANG00000021853	TGS1	98	39.082	Ornithorhynchus_anatinus
ENSDARG00000107511	lyn	99	72.222	ENSOCUG00000017522	TGS1	98	37.209	Oryctolagus_cuniculus
ENSDARG00000107511	lyn	99	80.663	ENSORLG00000004299	lyn	96	44.284	Oryzias_latipes
ENSDARG00000107511	lyn	99	80.663	ENSORLG00020004200	lyn	96	44.656	Oryzias_latipes_hni
ENSDARG00000107511	lyn	99	80.663	ENSORLG00015007251	lyn	95	46.311	Oryzias_latipes_hsok
ENSDARG00000107511	lyn	99	81.215	ENSOMEG00000020174	lyn	99	43.923	Oryzias_melastigma
ENSDARG00000107511	lyn	99	71.585	ENSOGAG00000012572	TGS1	98	38.328	Otolemur_garnettii
ENSDARG00000107511	lyn	99	70.492	ENSOARG00000014613	TGS1	98	38.665	Ovis_aries
ENSDARG00000107511	lyn	99	73.333	ENSPPAG00000039058	TGS1	98	38.603	Pan_paniscus
ENSDARG00000107511	lyn	99	72.778	ENSPPRG00000000677	TGS1	98	37.879	Panthera_pardus
ENSDARG00000107511	lyn	99	72.778	ENSPTIG00000005122	TGS1	98	37.646	Panthera_tigris_altaica
ENSDARG00000107511	lyn	99	73.333	ENSPTRG00000020262	TGS1	98	38.391	Pan_troglodytes
ENSDARG00000107511	lyn	99	73.333	ENSPANG00000018910	TGS1	98	38.128	Papio_anubis
ENSDARG00000107511	lyn	99	82.222	ENSPKIG00000005454	lyn	80	51.994	Paramormyrops_kingsleyae
ENSDARG00000107511	lyn	99	71.667	ENSPSIG00000014983	TGS1	99	39.130	Pelodiscus_sinensis
ENSDARG00000107511	lyn	99	79.781	ENSPMGG00000012711	lyn	87	79.724	Periophthalmus_magnuspinnatus
ENSDARG00000107511	lyn	99	73.333	ENSPEMG00000007957	Tgs1	98	36.532	Peromyscus_maniculatus_bairdii
ENSDARG00000107511	lyn	99	75.000	ENSPCIG00000016232	TGS1	97	37.896	Phascolarctos_cinereus
ENSDARG00000107511	lyn	99	78.022	ENSPFOG00000001545	-	99	43.939	Poecilia_formosa
ENSDARG00000107511	lyn	68	75.806	ENSPREG00000012261	-	99	36.908	Poecilia_reticulata
ENSDARG00000107511	lyn	99	73.333	ENSPPYG00000018597	TGS1	98	38.002	Pongo_abelii
ENSDARG00000107511	lyn	99	72.778	ENSPCAG00000000143	TGS1	98	37.788	Procavia_capensis
ENSDARG00000107511	lyn	99	73.889	ENSPCOG00000013537	TGS1	98	37.529	Propithecus_coquereli
ENSDARG00000107511	lyn	99	72.778	ENSPVAG00000016399	TGS1	85	74.074	Pteropus_vampyrus
ENSDARG00000107511	lyn	99	81.111	ENSPNYG00000023004	lyn	93	45.050	Pundamilia_nyererei
ENSDARG00000107511	lyn	99	86.111	ENSPNAG00000022249	lyn	99	54.728	Pygocentrus_nattereri
ENSDARG00000107511	lyn	99	75.000	ENSRNOG00000008156	Tgs1	98	37.355	Rattus_norvegicus
ENSDARG00000107511	lyn	99	70.000	ENSRBIG00000041893	TGS1	98	36.384	Rhinopithecus_bieti
ENSDARG00000107511	lyn	99	73.333	ENSRROG00000035127	TGS1	98	37.785	Rhinopithecus_roxellana
ENSDARG00000107511	lyn	97	38.710	YPL157W	-	68	39.437	Saccharomyces_cerevisiae
ENSDARG00000107511	lyn	82	70.946	ENSSBOG00000024469	TGS1	98	36.623	Saimiri_boliviensis_boliviensis
ENSDARG00000107511	lyn	99	74.586	ENSSHAG00000012878	TGS1	97	38.176	Sarcophilus_harrisii
ENSDARG00000107511	lyn	99	80.556	ENSSFOG00015001308	tgs1	96	44.718	Scleropages_formosus
ENSDARG00000107511	lyn	99	82.222	ENSSMAG00000019469	lyn	99	46.651	Scophthalmus_maximus
ENSDARG00000107511	lyn	99	77.128	ENSSLDG00000009024	lyn	88	78.027	Seriola_lalandi_dorsalis
ENSDARG00000107511	lyn	82	68.243	ENSSPUG00000009398	-	87	68.456	Sphenodon_punctatus
ENSDARG00000107511	lyn	81	78.378	ENSSPAG00000002170	lyn	97	43.114	Stegastes_partitus
ENSDARG00000107511	lyn	56	71.569	ENSSSCG00000006251	TGS1	97	34.304	Sus_scrofa
ENSDARG00000107511	lyn	99	73.333	ENSTGUG00000011050	TGS1	100	38.668	Taeniopygia_guttata
ENSDARG00000107511	lyn	99	71.271	ENSTRUG00000009532	lyn	73	67.692	Takifugu_rubripes
ENSDARG00000107511	lyn	99	81.667	ENSTNIG00000018133	lyn	98	43.799	Tetraodon_nigroviridis
ENSDARG00000107511	lyn	82	80.000	ENSTBEG00000010953	TGS1	83	80.000	Tupaia_belangeri
ENSDARG00000107511	lyn	99	72.222	ENSTTRG00000017239	TGS1	79	40.954	Tursiops_truncatus
ENSDARG00000107511	lyn	99	68.889	ENSUAMG00000027718	TGS1	98	37.011	Ursus_americanus
ENSDARG00000107511	lyn	68	67.480	ENSUMAG00000009761	TGS1	98	34.262	Ursus_maritimus
ENSDARG00000107511	lyn	99	73.481	ENSVPAG00000001166	TGS1	84	41.783	Vicugna_pacos
ENSDARG00000107511	lyn	68	67.480	ENSVVUG00000017821	TGS1	98	34.521	Vulpes_vulpes
ENSDARG00000107511	lyn	99	65.556	ENSXETG00000005648	tgs1	99	36.678	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	21873635.	IBA	Component
GO:0036261	7-methylguanosine cap hypermethylation	21873635.	IBA	Process
GO:0071164	RNA trimethylguanosine synthase activity	21873635.	IBA	Function