EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000109510 (Gene tree)
Gene ID: 406422
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog b
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 11367 bases
Position: chr12:3287783-3299149
Accession: ZDB-GENE-040426-2164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000152353	AD	PF09793.9	6.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000182032	-	1198	-	ENSDARP00000152353	196 (aa)	-	Q6PBA2

Gene Model

Click here to download ENSDARG00000109510's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000109510's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000109510	lsm12b	100	86.735	ENSDARG00000028848	lsm12a	100	86.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000109510	lsm12b	100	85.204	ENSG00000161654	LSM12	100	85.204	Homo_sapiens
ENSDARG00000109510	lsm12b	100	95.918	ENSAPOG00000007907	lsm12b	100	95.918	Acanthochromis_polyacanthus
ENSDARG00000109510	lsm12b	100	83.417	ENSAMEG00000018321	LSM12	100	83.417	Ailuropoda_melanoleuca
ENSDARG00000109510	lsm12b	100	93.367	ENSACIG00000008538	lsm12b	100	93.367	Amphilophus_citrinellus
ENSDARG00000109510	lsm12b	100	95.408	ENSAOCG00000021847	lsm12b	88	95.408	Amphiprion_ocellaris
ENSDARG00000109510	lsm12b	100	95.408	ENSAPEG00000002252	lsm12b	100	95.408	Amphiprion_percula
ENSDARG00000109510	lsm12b	100	93.878	ENSATEG00000005705	lsm12b	100	93.878	Anabas_testudineus
ENSDARG00000109510	lsm12b	100	85.204	ENSACAG00000004618	LSM12	100	85.204	Anolis_carolinensis
ENSDARG00000109510	lsm12b	100	85.204	ENSANAG00000029011	LSM12	100	85.204	Aotus_nancymaae
ENSDARG00000109510	lsm12b	100	93.878	ENSACLG00000026332	lsm12b	100	93.878	Astatotilapia_calliptera
ENSDARG00000109510	lsm12b	100	93.878	ENSAMXG00000032952	lsm12b	100	93.878	Astyanax_mexicanus
ENSDARG00000109510	lsm12b	100	84.184	ENSAMXG00000036117	lsm12a	91	84.184	Astyanax_mexicanus
ENSDARG00000109510	lsm12b	100	85.204	ENSBTAG00000016252	LSM12	100	85.204	Bos_taurus
ENSDARG00000109510	lsm12b	100	85.204	ENSCJAG00000048480	LSM12	100	85.204	Callithrix_jacchus
ENSDARG00000109510	lsm12b	100	85.204	ENSCAFG00000014379	LSM12	92	85.204	Canis_familiaris
ENSDARG00000109510	lsm12b	100	85.204	ENSCAFG00020012173	LSM12	100	85.204	Canis_lupus_dingo
ENSDARG00000109510	lsm12b	100	85.204	ENSCHIG00000018175	LSM12	100	85.204	Capra_hircus
ENSDARG00000109510	lsm12b	100	85.204	ENSTSYG00000036361	LSM12	100	85.204	Carlito_syrichta
ENSDARG00000109510	lsm12b	83	81.481	ENSCAPG00000009647	LSM12	89	81.481	Cavia_aperea
ENSDARG00000109510	lsm12b	100	84.184	ENSCPOG00000012860	LSM12	100	84.184	Cavia_porcellus
ENSDARG00000109510	lsm12b	100	85.204	ENSCCAG00000032905	LSM12	100	85.204	Cebus_capucinus
ENSDARG00000109510	lsm12b	100	85.204	ENSCATG00000030577	-	100	85.204	Cercocebus_atys
ENSDARG00000109510	lsm12b	100	84.694	ENSCLAG00000015759	LSM12	100	84.694	Chinchilla_lanigera
ENSDARG00000109510	lsm12b	100	85.204	ENSCSAG00000003486	LSM12	100	85.204	Chlorocebus_sabaeus
ENSDARG00000109510	lsm12b	56	85.321	ENSCHOG00000001198	LSM12	100	85.321	Choloepus_hoffmanni
ENSDARG00000109510	lsm12b	100	86.224	ENSCPBG00000027105	LSM12	100	86.224	Chrysemys_picta_bellii
ENSDARG00000109510	lsm12b	100	85.204	ENSCANG00000043328	LSM12	100	85.204	Colobus_angolensis_palliatus
ENSDARG00000109510	lsm12b	100	85.204	ENSCGRG00001002094	Lsm12	100	85.204	Cricetulus_griseus_chok1gshd
ENSDARG00000109510	lsm12b	89	77.586	ENSCGRG00000004316	Lsm12	98	77.586	Cricetulus_griseus_crigri
ENSDARG00000109510	lsm12b	100	93.878	ENSCSEG00000008434	lsm12b	100	93.878	Cynoglossus_semilaevis
ENSDARG00000109510	lsm12b	100	94.388	ENSCVAG00000008755	lsm12b	100	94.388	Cyprinodon_variegatus
ENSDARG00000109510	lsm12b	100	85.204	ENSDNOG00000002418	LSM12	91	85.204	Dasypus_novemcinctus
ENSDARG00000109510	lsm12b	100	85.204	ENSDORG00000016381	Lsm12	100	85.204	Dipodomys_ordii
ENSDARG00000109510	lsm12b	73	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSDARG00000109510	lsm12b	83	34.940	FBgn0030364	Lsm12	76	34.940	Drosophila_melanogaster
ENSDARG00000109510	lsm12b	88	75.723	ENSETEG00000011012	-	99	75.723	Echinops_telfairi
ENSDARG00000109510	lsm12b	100	84.694	ENSETEG00000008374	LSM12	100	84.694	Echinops_telfairi
ENSDARG00000109510	lsm12b	85	67.066	ENSEBUG00000016299	lsm12a	92	67.066	Eptatretus_burgeri
ENSDARG00000109510	lsm12b	100	85.204	ENSEASG00005010155	LSM12	100	85.204	Equus_asinus_asinus
ENSDARG00000109510	lsm12b	100	85.204	ENSECAG00000009071	LSM12	100	85.204	Equus_caballus
ENSDARG00000109510	lsm12b	78	85.621	ENSEEUG00000002419	-	100	85.621	Erinaceus_europaeus
ENSDARG00000109510	lsm12b	100	90.306	ENSELUG00000000256	-	100	90.306	Esox_lucius
ENSDARG00000109510	lsm12b	100	92.347	ENSELUG00000015538	lsm12b	100	87.755	Esox_lucius
ENSDARG00000109510	lsm12b	100	85.204	ENSFCAG00000037021	LSM12	100	85.204	Felis_catus
ENSDARG00000109510	lsm12b	76	85.135	ENSFDAG00000008954	LSM12	87	85.135	Fukomys_damarensis
ENSDARG00000109510	lsm12b	100	93.367	ENSFHEG00000019913	lsm12b	100	93.367	Fundulus_heteroclitus
ENSDARG00000109510	lsm12b	81	93.671	ENSGMOG00000015449	lsm12b	100	93.671	Gadus_morhua
ENSDARG00000109510	lsm12b	78	86.275	ENSGALG00000039803	LSM12	100	86.275	Gallus_gallus
ENSDARG00000109510	lsm12b	100	93.878	ENSGAFG00000011829	lsm12b	100	93.878	Gambusia_affinis
ENSDARG00000109510	lsm12b	81	94.304	ENSGACG00000003428	lsm12b	100	94.304	Gasterosteus_aculeatus
ENSDARG00000109510	lsm12b	100	85.714	ENSGAGG00000021965	LSM12	100	85.714	Gopherus_agassizii
ENSDARG00000109510	lsm12b	100	85.204	ENSGGOG00000010589	-	100	85.204	Gorilla_gorilla
ENSDARG00000109510	lsm12b	85	94.012	ENSHBUG00000007667	lsm12b	74	94.012	Haplochromis_burtoni
ENSDARG00000109510	lsm12b	100	85.204	ENSHGLG00000011411	LSM12	100	85.204	Heterocephalus_glaber_female
ENSDARG00000109510	lsm12b	79	85.065	ENSHGLG00100000241	LSM12	82	85.065	Heterocephalus_glaber_male
ENSDARG00000109510	lsm12b	100	93.367	ENSHCOG00000002094	lsm12b	100	93.367	Hippocampus_comes
ENSDARG00000109510	lsm12b	99	82.474	ENSIPUG00000008936	lsm12a	99	82.474	Ictalurus_punctatus
ENSDARG00000109510	lsm12b	100	94.388	ENSIPUG00000014800	lsm12	100	94.388	Ictalurus_punctatus
ENSDARG00000109510	lsm12b	100	85.204	ENSSTOG00000007403	LSM12	100	85.204	Ictidomys_tridecemlineatus
ENSDARG00000109510	lsm12b	96	75.789	ENSJJAG00000011793	-	100	75.789	Jaculus_jaculus
ENSDARG00000109510	lsm12b	100	85.204	ENSJJAG00000004364	-	100	85.204	Jaculus_jaculus
ENSDARG00000109510	lsm12b	80	74.214	ENSJJAG00000014652	-	95	74.214	Jaculus_jaculus
ENSDARG00000109510	lsm12b	85	94.611	ENSKMAG00000007704	lsm12b	56	94.611	Kryptolebias_marmoratus
ENSDARG00000109510	lsm12b	100	95.918	ENSLBEG00000027999	lsm12b	100	95.918	Labrus_bergylta
ENSDARG00000109510	lsm12b	100	87.245	ENSLACG00000015981	LSM12	100	87.245	Latimeria_chalumnae
ENSDARG00000109510	lsm12b	100	90.306	ENSLOCG00000013079	lsm12b	99	90.306	Lepisosteus_oculatus
ENSDARG00000109510	lsm12b	100	85.204	ENSLAFG00000005202	LSM12	100	85.204	Loxodonta_africana
ENSDARG00000109510	lsm12b	100	85.204	ENSMFAG00000031376	LSM12	100	85.204	Macaca_fascicularis
ENSDARG00000109510	lsm12b	100	85.204	ENSMMUG00000006804	LSM12	100	85.204	Macaca_mulatta
ENSDARG00000109510	lsm12b	100	85.204	ENSMNEG00000030594	-	100	85.204	Macaca_nemestrina
ENSDARG00000109510	lsm12b	100	85.204	ENSMLEG00000039934	LSM12	100	85.204	Mandrillus_leucophaeus
ENSDARG00000109510	lsm12b	100	94.898	ENSMAMG00000004279	lsm12b	100	94.898	Mastacembelus_armatus
ENSDARG00000109510	lsm12b	100	93.878	ENSMZEG00005005754	lsm12b	100	93.878	Maylandia_zebra
ENSDARG00000109510	lsm12b	100	85.204	ENSMICG00000037219	LSM12	100	85.204	Microcebus_murinus
ENSDARG00000109510	lsm12b	100	85.204	ENSMOCG00000019878	-	100	85.204	Microtus_ochrogaster
ENSDARG00000109510	lsm12b	100	72.959	ENSMOCG00000017015	-	86	72.959	Microtus_ochrogaster
ENSDARG00000109510	lsm12b	100	94.898	ENSMMOG00000020848	lsm12b	100	94.898	Mola_mola
ENSDARG00000109510	lsm12b	100	94.898	ENSMALG00000007578	lsm12b	100	94.898	Monopterus_albus
ENSDARG00000109510	lsm12b	100	84.694	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.694	Mus_caroli
ENSDARG00000109510	lsm12b	100	85.204	ENSMUSG00000020922	Lsm12	100	85.204	Mus_musculus
ENSDARG00000109510	lsm12b	100	78.404	MGP_PahariEiJ_G0018371	Lsm12	100	78.404	Mus_pahari
ENSDARG00000109510	lsm12b	100	84.694	MGP_SPRETEiJ_G0018084	Lsm12	100	84.694	Mus_spretus
ENSDARG00000109510	lsm12b	100	85.714	ENSMLUG00000006391	LSM12	100	85.714	Myotis_lucifugus
ENSDARG00000109510	lsm12b	100	85.204	ENSNGAG00000001870	Lsm12	100	85.204	Nannospalax_galili
ENSDARG00000109510	lsm12b	100	57.635	ENSNGAG00000015429	-	100	57.635	Nannospalax_galili
ENSDARG00000109510	lsm12b	100	93.878	ENSNBRG00000006266	lsm12b	100	93.878	Neolamprologus_brichardi
ENSDARG00000109510	lsm12b	100	85.204	ENSNLEG00000005580	-	100	85.204	Nomascus_leucogenys
ENSDARG00000109510	lsm12b	85	84.940	ENSMEUG00000007501	-	100	84.940	Notamacropus_eugenii
ENSDARG00000109510	lsm12b	100	85.204	ENSOPRG00000008552	LSM12	100	85.204	Ochotona_princeps
ENSDARG00000109510	lsm12b	99	84.536	ENSODEG00000017998	-	99	84.536	Octodon_degus
ENSDARG00000109510	lsm12b	100	77.041	ENSODEG00000007886	-	74	77.041	Octodon_degus
ENSDARG00000109510	lsm12b	100	93.878	ENSONIG00000007933	lsm12b	100	93.878	Oreochromis_niloticus
ENSDARG00000109510	lsm12b	99	80.000	ENSOCUG00000024823	-	100	80.000	Oryctolagus_cuniculus
ENSDARG00000109510	lsm12b	99	81.026	ENSOCUG00000021254	-	100	81.026	Oryctolagus_cuniculus
ENSDARG00000109510	lsm12b	99	79.487	ENSOCUG00000027889	-	100	79.487	Oryctolagus_cuniculus
ENSDARG00000109510	lsm12b	100	83.417	ENSOCUG00000008566	-	100	83.417	Oryctolagus_cuniculus
ENSDARG00000109510	lsm12b	100	94.898	ENSORLG00000011310	lsm12b	100	94.898	Oryzias_latipes
ENSDARG00000109510	lsm12b	100	94.898	ENSORLG00020002060	lsm12b	92	94.898	Oryzias_latipes_hni
ENSDARG00000109510	lsm12b	100	94.898	ENSORLG00015001647	lsm12b	92	94.898	Oryzias_latipes_hsok
ENSDARG00000109510	lsm12b	100	94.898	ENSOMEG00000006184	lsm12b	92	94.898	Oryzias_melastigma
ENSDARG00000109510	lsm12b	100	85.204	ENSOGAG00000010489	LSM12	100	85.204	Otolemur_garnettii
ENSDARG00000109510	lsm12b	100	82.178	ENSOARG00000006589	LSM12	100	82.178	Ovis_aries
ENSDARG00000109510	lsm12b	100	76.020	ENSPPAG00000034974	-	100	76.020	Pan_paniscus
ENSDARG00000109510	lsm12b	100	85.204	ENSPPRG00000023420	LSM12	100	85.204	Panthera_pardus
ENSDARG00000109510	lsm12b	72	84.545	ENSPTIG00000014850	-	100	84.545	Panthera_tigris_altaica
ENSDARG00000109510	lsm12b	78	85.621	ENSPTIG00000012704	-	82	85.621	Panthera_tigris_altaica
ENSDARG00000109510	lsm12b	100	85.204	ENSPTRG00000009261	LSM12	100	85.204	Pan_troglodytes
ENSDARG00000109510	lsm12b	100	85.204	ENSPANG00000021315	-	100	85.204	Papio_anubis
ENSDARG00000109510	lsm12b	100	83.163	ENSPKIG00000017932	-	100	83.163	Paramormyrops_kingsleyae
ENSDARG00000109510	lsm12b	100	91.837	ENSPKIG00000021058	lsm12b	100	91.837	Paramormyrops_kingsleyae
ENSDARG00000109510	lsm12b	100	94.388	ENSPMGG00000021344	lsm12b	100	94.388	Periophthalmus_magnuspinnatus
ENSDARG00000109510	lsm12b	100	85.204	ENSPEMG00000012199	Lsm12	100	85.204	Peromyscus_maniculatus_bairdii
ENSDARG00000109510	lsm12b	89	68.571	ENSPMAG00000005461	lsm12a	99	68.571	Petromyzon_marinus
ENSDARG00000109510	lsm12b	100	85.204	ENSPCIG00000020244	LSM12	100	85.204	Phascolarctos_cinereus
ENSDARG00000109510	lsm12b	100	92.857	ENSPFOG00000015930	lsm12b	100	92.857	Poecilia_formosa
ENSDARG00000109510	lsm12b	100	92.857	ENSPLAG00000021089	lsm12b	100	92.857	Poecilia_latipinna
ENSDARG00000109510	lsm12b	100	92.857	ENSPMEG00000012961	lsm12b	100	92.857	Poecilia_mexicana
ENSDARG00000109510	lsm12b	87	93.567	ENSPREG00000010236	lsm12b	95	93.567	Poecilia_reticulata
ENSDARG00000109510	lsm12b	100	85.204	ENSPPYG00000008344	LSM12	100	85.204	Pongo_abelii
ENSDARG00000109510	lsm12b	81	85.535	ENSPCAG00000008790	LSM12	100	85.535	Procavia_capensis
ENSDARG00000109510	lsm12b	100	85.204	ENSPCOG00000027951	LSM12	100	85.204	Propithecus_coquereli
ENSDARG00000109510	lsm12b	100	84.694	ENSPVAG00000013706	LSM12	100	84.694	Pteropus_vampyrus
ENSDARG00000109510	lsm12b	100	93.878	ENSPNYG00000003386	lsm12b	100	93.878	Pundamilia_nyererei
ENSDARG00000109510	lsm12b	100	92.347	ENSPNAG00000004186	lsm12b	100	92.347	Pygocentrus_nattereri
ENSDARG00000109510	lsm12b	100	83.163	ENSPNAG00000018435	lsm12a	100	83.163	Pygocentrus_nattereri
ENSDARG00000109510	lsm12b	100	85.204	ENSRNOG00000020894	Lsm12	100	85.204	Rattus_norvegicus
ENSDARG00000109510	lsm12b	100	85.204	ENSRBIG00000027910	LSM12	100	85.204	Rhinopithecus_bieti
ENSDARG00000109510	lsm12b	99	52.577	ENSRROG00000000537	-	99	52.577	Rhinopithecus_roxellana
ENSDARG00000109510	lsm12b	100	85.204	ENSRROG00000045530	-	100	85.204	Rhinopithecus_roxellana
ENSDARG00000109510	lsm12b	100	85.204	ENSSBOG00000025310	LSM12	100	85.204	Saimiri_boliviensis_boliviensis
ENSDARG00000109510	lsm12b	81	84.177	ENSSHAG00000014914	LSM12	100	84.177	Sarcophilus_harrisii
ENSDARG00000109510	lsm12b	100	91.837	ENSSFOG00015020392	lsm12a	100	91.837	Scleropages_formosus
ENSDARG00000109510	lsm12b	100	91.837	ENSSFOG00015009612	lsm12	100	91.837	Scleropages_formosus
ENSDARG00000109510	lsm12b	100	94.898	ENSSMAG00000008089	lsm12b	100	94.898	Scophthalmus_maximus
ENSDARG00000109510	lsm12b	100	95.408	ENSSDUG00000012711	lsm12b	100	95.408	Seriola_dumerili
ENSDARG00000109510	lsm12b	100	95.408	ENSSLDG00000007404	lsm12b	100	95.408	Seriola_lalandi_dorsalis
ENSDARG00000109510	lsm12b	78	85.621	ENSSARG00000005537	LSM12	100	85.621	Sorex_araneus
ENSDARG00000109510	lsm12b	100	86.224	ENSSPUG00000011984	LSM12	100	86.224	Sphenodon_punctatus
ENSDARG00000109510	lsm12b	100	95.408	ENSSPAG00000017058	lsm12b	100	95.408	Stegastes_partitus
ENSDARG00000109510	lsm12b	100	85.204	ENSSSCG00000032394	LSM12	100	85.204	Sus_scrofa
ENSDARG00000109510	lsm12b	100	93.878	ENSTRUG00000007121	lsm12b	100	93.878	Takifugu_rubripes
ENSDARG00000109510	lsm12b	100	93.878	ENSTNIG00000014436	lsm12b	100	93.878	Tetraodon_nigroviridis
ENSDARG00000109510	lsm12b	100	83.163	ENSTBEG00000012392	-	100	83.163	Tupaia_belangeri
ENSDARG00000109510	lsm12b	100	84.694	ENSTBEG00000012523	-	100	84.694	Tupaia_belangeri
ENSDARG00000109510	lsm12b	100	85.204	ENSTTRG00000010433	LSM12	100	85.204	Tursiops_truncatus
ENSDARG00000109510	lsm12b	100	85.204	ENSUAMG00000006313	LSM12	100	85.204	Ursus_americanus
ENSDARG00000109510	lsm12b	81	82.911	ENSUMAG00000012987	LSM12	90	82.911	Ursus_maritimus
ENSDARG00000109510	lsm12b	100	80.102	ENSVPAG00000011145	LSM12	100	80.102	Vicugna_pacos
ENSDARG00000109510	lsm12b	100	85.204	ENSVVUG00000017581	LSM12	100	85.204	Vulpes_vulpes
ENSDARG00000109510	lsm12b	82	61.491	ENSXETG00000003371	lsm12	78	61.491	Xenopus_tropicalis
ENSDARG00000109510	lsm12b	100	93.878	ENSXCOG00000003994	lsm12b	100	93.878	Xiphophorus_couchianus
ENSDARG00000109510	lsm12b	100	93.878	ENSXMAG00000020950	lsm12b	100	93.878	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0008150	biological_process	-	ND	Process
GO:0016070	RNA metabolic process	21873635.	IBA	Process