EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000110591 (Gene tree)
Gene ID: -
Gene Symbol: si:dkey-27d5.6
Alias: -
Full Name: si:dkey-27d5.6
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1918 bases
Position: chr11:12470089-12472006
Accession: ZDB-GENE-141216-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000098190	zf-CCHC_2	PF13696.6	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000186965	-	525	-	ENSDARP00000145396	174 (aa)	-	A0A2R8PWS2
ENSDART00000160558	-	1007	-	ENSDARP00000136058	231 (aa)	-	A0A0R4IJQ3
ENSDART00000113175	-	837	-	ENSDARP00000098190	278 (aa)	-	E7EZH1

Gene Model

Click here to download ENSDARG00000110591's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000110591's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000110591	si:dkey-27d5.6	100	98.561	ENSDARG00000115079	zgc:174353	100	98.561
ENSDARG00000110591	si:dkey-27d5.6	100	98.201	ENSDARG00000116389	CR450764.8	100	98.201
ENSDARG00000110591	si:dkey-27d5.6	100	94.964	ENSDARG00000094196	si:dkey-27d5.10	100	94.964
ENSDARG00000110591	si:dkey-27d5.6	100	97.482	ENSDARG00000070812	si:ch211-156l18.6	100	97.482
ENSDARG00000110591	si:dkey-27d5.6	100	98.201	ENSDARG00000088552	si:dkey-23f9.13	100	98.201
ENSDARG00000110591	si:dkey-27d5.6	100	98.561	ENSDARG00000100754	CR450764.1	100	98.561
ENSDARG00000110591	si:dkey-27d5.6	100	98.201	ENSDARG00000111826	zgc:174354	100	98.201
ENSDARG00000110591	si:dkey-27d5.6	100	97.842	ENSDARG00000113994	zgc:174354	100	97.842
ENSDARG00000110591	si:dkey-27d5.6	100	97.842	ENSDARG00000112365	zgc:174353	100	97.842
ENSDARG00000110591	si:dkey-27d5.6	100	97.482	ENSDARG00000094335	si:dkey-23f9.12	100	97.482
ENSDARG00000110591	si:dkey-27d5.6	100	98.921	ENSDARG00000113889	zgc:174355	100	98.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000110591	si:dkey-27d5.6	80	34.894	WBGene00009477	rbpl-1	51	31.579	Caenorhabditis_elegans
ENSDARG00000110591	si:dkey-27d5.6	71	36.283	ENSCING00000017248	-	99	34.483	Ciona_intestinalis
ENSDARG00000110591	si:dkey-27d5.6	68	37.264	ENSCSAVG00000002639	-	100	37.264	Ciona_savignyi
ENSDARG00000110591	si:dkey-27d5.6	57	44.937	ENSELUG00000017972	-	59	47.154	Esox_lucius
ENSDARG00000110591	si:dkey-27d5.6	85	50.211	ENSGMOG00000004819	-	100	50.211	Gadus_morhua
ENSDARG00000110591	si:dkey-27d5.6	50	46.043	ENSGACG00000016781	-	51	46.341	Gasterosteus_aculeatus
ENSDARG00000110591	si:dkey-27d5.6	79	39.095	ENSLBEG00000021906	-	100	40.586	Labrus_bergylta
ENSDARG00000110591	si:dkey-27d5.6	84	50.207	ENSPFOG00000022154	-	59	49.789	Poecilia_formosa
ENSDARG00000110591	si:dkey-27d5.6	50	48.571	ENSSMAG00000008324	-	54	51.587	Scophthalmus_maximus
ENSDARG00000110591	si:dkey-27d5.6	54	44.295	ENSTNIG00000005451	-	54	44.961	Tetraodon_nigroviridis