EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000111388 (Gene tree)
Gene ID: -
Gene Symbol: CABZ01068469.1
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 14113 bases
Position: chr4:1388965-1403077
Accession: 569006
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000154595	MIF4G	PF02854.19	3.8e-53	1	2
ENSDARP00000154595	MIF4G	PF02854.19	3.8e-53	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000189813	CABZ01068469.1-201	1413	XM_017355122	ENSDARP00000154595	470 (aa)	XP_017210611	A0A2R8QNG1

Gene Model

Click here to download ENSDARG00000111388's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000111388's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000111388	CABZ01068469.1	95	83.512	ENSCVAG00000006167	UPF2	79	82.826	Cyprinodon_variegatus
ENSDARG00000111388	CABZ01068469.1	88	81.206	MGP_CAROLIEiJ_G0023157	Upf2	58	79.208	Mus_caroli
ENSDARG00000111388	CABZ01068469.1	88	81.206	ENSMUSG00000043241	Upf2	58	79.208	Mus_musculus
ENSDARG00000111388	CABZ01068469.1	88	81.439	MGP_PahariEiJ_G0019217	Upf2	58	79.538	Mus_pahari
ENSDARG00000111388	CABZ01068469.1	88	81.206	MGP_SPRETEiJ_G0024075	Upf2	58	79.208	Mus_spretus
ENSDARG00000111388	CABZ01068469.1	88	81.481	ENSOANG00000019744	-	90	80.131	Ornithorhynchus_anatinus
ENSDARG00000111388	CABZ01068469.1	88	80.974	ENSPPYG00000002089	-	54	79.565	Pongo_abelii
ENSDARG00000111388	CABZ01068469.1	88	81.439	ENSRNOG00000023593	Upf2	79	80.131	Rattus_norvegicus
ENSDARG00000111388	CABZ01068469.1	88	81.206	ENSSSCG00000011117	-	56	79.913	Sus_scrofa
ENSDARG00000111388	CABZ01068469.1	55	77.528	ENSTGUG00000015714	-	66	77.481	Taeniopygia_guttata