EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000111826 (Gene tree)
Gene ID: 555814
Gene Symbol: zgc:174354
Alias: -
Full Name: zgc:174354
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1919 bases
Position: chr11:12450564-12452482
Accession: ZDB-GENE-080218-8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000155435	zf-CCHC_2	PF13696.6	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000159554	-	1007	-	ENSDARP00000133378	231 (aa)	-	A0A0R4IE39
ENSDART00000192041	-	525	XM_021479623	ENSDARP00000146599	174 (aa)	XP_021335298	A0A2R8Q6A9
ENSDART00000184520	-	837	-	ENSDARP00000155435	278 (aa)	-	A0A2R8QLX6

Gene Model

Click here to download ENSDARG00000111826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000111826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000111826	zgc:174354	100	97.842	ENSDARG00000116389	CR450764.8	100	97.842
ENSDARG00000111826	zgc:174354	100	98.561	ENSDARG00000070812	si:ch211-156l18.6	100	98.561
ENSDARG00000111826	zgc:174354	100	99.640	ENSDARG00000100754	CR450764.1	100	99.640
ENSDARG00000111826	zgc:174354	100	97.842	ENSDARG00000112365	zgc:174353	100	97.842
ENSDARG00000111826	zgc:174354	100	95.324	ENSDARG00000094196	si:dkey-27d5.10	100	95.324
ENSDARG00000111826	zgc:174354	100	98.561	ENSDARG00000115079	zgc:174353	100	98.561
ENSDARG00000111826	zgc:174354	100	97.842	ENSDARG00000094335	si:dkey-23f9.12	100	97.842
ENSDARG00000111826	zgc:174354	100	98.201	ENSDARG00000113994	zgc:174354	100	98.201
ENSDARG00000111826	zgc:174354	100	98.561	ENSDARG00000088552	si:dkey-23f9.13	100	98.561
ENSDARG00000111826	zgc:174354	100	98.201	ENSDARG00000110591	si:dkey-27d5.6	100	98.201
ENSDARG00000111826	zgc:174354	100	98.561	ENSDARG00000113889	zgc:174355	100	98.561

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000111826	zgc:174354	79	35.065	WBGene00009477	rbpl-1	51	31.088	Caenorhabditis_elegans
ENSDARG00000111826	zgc:174354	71	35.841	ENSCING00000017248	-	99	34.052	Ciona_intestinalis
ENSDARG00000111826	zgc:174354	68	36.792	ENSCSAVG00000002639	-	100	36.792	Ciona_savignyi
ENSDARG00000111826	zgc:174354	57	45.570	ENSELUG00000017972	-	59	47.967	Esox_lucius
ENSDARG00000111826	zgc:174354	85	49.789	ENSGMOG00000004819	-	100	49.789	Gadus_morhua
ENSDARG00000111826	zgc:174354	50	46.763	ENSGACG00000016781	-	51	47.154	Gasterosteus_aculeatus
ENSDARG00000111826	zgc:174354	79	37.603	ENSLBEG00000021906	-	100	39.076	Labrus_bergylta
ENSDARG00000111826	zgc:174354	84	50.207	ENSPFOG00000022154	-	59	49.367	Poecilia_formosa
ENSDARG00000111826	zgc:174354	83	30.451	YKL059C	-	59	30.741	Saccharomyces_cerevisiae
ENSDARG00000111826	zgc:174354	50	49.286	ENSSMAG00000008324	-	54	52.381	Scophthalmus_maximus
ENSDARG00000111826	zgc:174354	54	44.966	ENSTNIG00000005451	-	54	45.736	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0046872	metal ion binding	-	IEA	Function