EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSDARG00000112579 (Gene tree)
Gene ID: 450027
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 19065 bases
Position: chr9:29985010-30004074
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000018592	CMS1	PF14617.6	4.1e-30	1	1
ENSDARP00000018592	DEAD	PF00270.29	1.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000020743	-	1054	XM_021478644	ENSDARP00000018592	292 (aa)	XP_021334319	F1QIT7
ENSDART00000188199	-	1804	-	ENSDARP00000156333	352 (aa)	-	B0S5V7

Gene Model

Click here to download ENSDARG00000112579's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000112579's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000112579	cmss1	100	47.119	ENSG00000184220	CMSS1	98	61.250	Homo_sapiens
ENSDARG00000112579	cmss1	70	73.892	ENSAPOG00000010604	cmss1	82	73.892	Acanthochromis_polyacanthus
ENSDARG00000112579	cmss1	84	50.407	ENSAMEG00000004092	CMSS1	88	51.724	Ailuropoda_melanoleuca
ENSDARG00000112579	cmss1	70	60.591	ENSACIG00000021854	cmss1	96	56.589	Amphilophus_citrinellus
ENSDARG00000112579	cmss1	100	63.014	ENSAOCG00000013361	cmss1	100	63.014	Amphiprion_ocellaris
ENSDARG00000112579	cmss1	100	62.329	ENSAPEG00000005829	cmss1	100	62.329	Amphiprion_percula
ENSDARG00000112579	cmss1	100	62.329	ENSATEG00000008209	cmss1	100	62.585	Anabas_testudineus
ENSDARG00000112579	cmss1	79	56.710	ENSAPLG00000010542	CMSS1	99	56.710	Anas_platyrhynchos
ENSDARG00000112579	cmss1	86	51.587	ENSACAG00000011065	CMSS1	84	53.680	Anolis_carolinensis
ENSDARG00000112579	cmss1	100	44.951	ENSANAG00000023565	CMSS1	100	45.847	Aotus_nancymaae
ENSDARG00000112579	cmss1	100	58.923	ENSACLG00000027294	cmss1	100	59.524	Astatotilapia_calliptera
ENSDARG00000112579	cmss1	100	64.094	ENSAMXG00000002046	cmss1	100	63.973	Astyanax_mexicanus
ENSDARG00000112579	cmss1	100	47.000	ENSBTAG00000013663	CMSS1	100	47.458	Bos_taurus
ENSDARG00000112579	cmss1	100	48.822	ENSCJAG00000000610	CMSS1	100	47.841	Callithrix_jacchus
ENSDARG00000112579	cmss1	84	50.407	ENSCAFG00000009230	CMSS1	73	54.950	Canis_familiaris
ENSDARG00000112579	cmss1	84	50.407	ENSCAFG00020009464	-	82	52.814	Canis_lupus_dingo
ENSDARG00000112579	cmss1	69	53.960	ENSCAFG00020024156	-	63	53.960	Canis_lupus_dingo
ENSDARG00000112579	cmss1	82	52.941	ENSCHIG00000013003	CMSS1	82	53.247	Capra_hircus
ENSDARG00000112579	cmss1	84	51.626	ENSTSYG00000009266	CMSS1	87	53.247	Carlito_syrichta
ENSDARG00000112579	cmss1	72	46.667	ENSCAPG00000013584	CMSS1	87	49.462	Cavia_aperea
ENSDARG00000112579	cmss1	100	47.959	ENSCPOG00000014680	CMSS1	100	46.667	Cavia_porcellus
ENSDARG00000112579	cmss1	100	46.254	ENSCCAG00000034685	CMSS1	100	47.508	Cebus_capucinus
ENSDARG00000112579	cmss1	100	46.918	ENSCATG00000031980	CMSS1	100	47.475	Cercocebus_atys
ENSDARG00000112579	cmss1	79	52.155	ENSCLAG00000011241	CMSS1	97	52.814	Chinchilla_lanigera
ENSDARG00000112579	cmss1	79	52.586	ENSCSAG00000006024	CMSS1	92	52.381	Chlorocebus_sabaeus
ENSDARG00000112579	cmss1	100	35.644	ENSCHOG00000012098	CMSS1	100	36.700	Choloepus_hoffmanni
ENSDARG00000112579	cmss1	65	39.791	ENSCING00000014848	-	100	39.037	Ciona_intestinalis
ENSDARG00000112579	cmss1	100	46.918	ENSCANG00000031337	CMSS1	100	47.811	Colobus_angolensis_palliatus
ENSDARG00000112579	cmss1	100	46.575	ENSCGRG00001014305	Cmss1	100	45.946	Cricetulus_griseus_chok1gshd
ENSDARG00000112579	cmss1	84	49.593	ENSCGRG00000006722	Cmss1	88	51.948	Cricetulus_griseus_crigri
ENSDARG00000112579	cmss1	100	59.259	ENSCSEG00000004958	cmss1	100	61.953	Cynoglossus_semilaevis
ENSDARG00000112579	cmss1	100	57.679	ENSCVAG00000005039	cmss1	100	58.446	Cyprinodon_variegatus
ENSDARG00000112579	cmss1	79	53.017	ENSDNOG00000040418	CMSS1	82	52.814	Dasypus_novemcinctus
ENSDARG00000112579	cmss1	100	47.279	ENSDORG00000010461	Cmss1	100	47.333	Dipodomys_ordii
ENSDARG00000112579	cmss1	80	51.915	ENSEASG00005010966	CMSS1	92	54.950	Equus_asinus_asinus
ENSDARG00000112579	cmss1	79	52.586	ENSECAG00000015662	CMSS1	99	53.247	Equus_caballus
ENSDARG00000112579	cmss1	100	33.219	ENSEEUG00000007624	-	100	33.219	Erinaceus_europaeus
ENSDARG00000112579	cmss1	100	58.033	ENSELUG00000019459	cmss1	100	58.361	Esox_lucius
ENSDARG00000112579	cmss1	100	47.603	ENSFCAG00000044577	CMSS1	100	47.333	Felis_catus
ENSDARG00000112579	cmss1	79	54.113	ENSFALG00000005816	CMSS1	95	54.113	Ficedula_albicollis
ENSDARG00000112579	cmss1	79	50.862	ENSFDAG00000012577	CMSS1	89	53.960	Fukomys_damarensis
ENSDARG00000112579	cmss1	80	64.255	ENSFHEG00000012008	cmss1	95	64.935	Fundulus_heteroclitus
ENSDARG00000112579	cmss1	99	59.932	ENSGMOG00000016729	cmss1	100	59.247	Gadus_morhua
ENSDARG00000112579	cmss1	87	53.668	ENSGALG00000015267	CMSS1	87	55.844	Gallus_gallus
ENSDARG00000112579	cmss1	71	68.599	ENSGAFG00000021217	cmss1	77	68.473	Gambusia_affinis
ENSDARG00000112579	cmss1	99	55.517	ENSGACG00000002798	cmss1	100	57.931	Gasterosteus_aculeatus
ENSDARG00000112579	cmss1	91	51.661	ENSGAGG00000019861	CMSS1	88	55.411	Gopherus_agassizii
ENSDARG00000112579	cmss1	84	50.407	ENSGGOG00000014125	CMSS1	87	51.948	Gorilla_gorilla
ENSDARG00000112579	cmss1	100	58.586	ENSHBUG00000008431	cmss1	100	60.204	Haplochromis_burtoni
ENSDARG00000112579	cmss1	83	50.413	ENSHGLG00000019481	CMSS1	92	52.381	Heterocephalus_glaber_female
ENSDARG00000112579	cmss1	83	50.413	ENSHGLG00100010314	CMSS1	91	52.381	Heterocephalus_glaber_male
ENSDARG00000112579	cmss1	100	56.081	ENSHCOG00000003222	cmss1	100	56.081	Hippocampus_comes
ENSDARG00000112579	cmss1	100	65.188	ENSIPUG00000011591	cmss1	100	64.164	Ictalurus_punctatus
ENSDARG00000112579	cmss1	100	47.119	ENSSTOG00000019366	CMSS1	100	46.284	Ictidomys_tridecemlineatus
ENSDARG00000112579	cmss1	100	48.123	ENSJJAG00000014894	Cmss1	100	46.333	Jaculus_jaculus
ENSDARG00000112579	cmss1	93	50.183	ENSKMAG00000002390	cmss1	82	59.606	Kryptolebias_marmoratus
ENSDARG00000112579	cmss1	77	57.551	ENSLBEG00000006298	cmss1	83	65.686	Labrus_bergylta
ENSDARG00000112579	cmss1	79	54.978	ENSLACG00000009293	CMSS1	99	54.978	Latimeria_chalumnae
ENSDARG00000112579	cmss1	100	53.767	ENSLOCG00000009391	cmss1	100	53.425	Lepisosteus_oculatus
ENSDARG00000112579	cmss1	79	52.155	ENSLAFG00000017509	CMSS1	99	51.948	Loxodonta_africana
ENSDARG00000112579	cmss1	100	46.575	ENSMFAG00000045006	CMSS1	100	46.801	Macaca_fascicularis
ENSDARG00000112579	cmss1	100	46.233	ENSMMUG00000002939	CMSS1	96	52.036	Macaca_mulatta
ENSDARG00000112579	cmss1	100	46.575	ENSMNEG00000031315	CMSS1	100	47.138	Macaca_nemestrina
ENSDARG00000112579	cmss1	100	46.918	ENSMLEG00000033660	CMSS1	100	47.138	Mandrillus_leucophaeus
ENSDARG00000112579	cmss1	100	63.823	ENSMAMG00000017176	cmss1	100	63.390	Mastacembelus_armatus
ENSDARG00000112579	cmss1	100	58.923	ENSMZEG00005021886	cmss1	100	59.524	Maylandia_zebra
ENSDARG00000112579	cmss1	69	58.416	ENSMGAG00000014360	CMSS1	89	58.416	Meleagris_gallopavo
ENSDARG00000112579	cmss1	100	32.776	ENSMAUG00000020609	Cmss1	100	32.770	Mesocricetus_auratus
ENSDARG00000112579	cmss1	100	47.959	ENSMICG00000048977	CMSS1	100	45.946	Microcebus_murinus
ENSDARG00000112579	cmss1	100	45.946	ENSMOCG00000021937	Cmss1	100	44.932	Microtus_ochrogaster
ENSDARG00000112579	cmss1	76	60.251	ENSMMOG00000019794	cmss1	84	67.980	Mola_mola
ENSDARG00000112579	cmss1	92	47.232	ENSMODG00000002275	CMSS1	85	51.931	Monodelphis_domestica
ENSDARG00000112579	cmss1	100	64.068	ENSMALG00000004250	cmss1	100	63.051	Monopterus_albus
ENSDARG00000112579	cmss1	100	47.782	MGP_CAROLIEiJ_G0020824	Cmss1	100	46.622	Mus_caroli
ENSDARG00000112579	cmss1	100	47.440	ENSMUSG00000022748	Cmss1	100	46.284	Mus_musculus
ENSDARG00000112579	cmss1	100	48.630	MGP_PahariEiJ_G0016524	Cmss1	100	46.959	Mus_pahari
ENSDARG00000112579	cmss1	100	47.099	MGP_SPRETEiJ_G0021724	Cmss1	100	46.284	Mus_spretus
ENSDARG00000112579	cmss1	93	47.253	ENSMPUG00000011324	CMSS1	87	53.043	Mustela_putorius_furo
ENSDARG00000112579	cmss1	84	50.403	ENSMLUG00000001131	CMSS1	87	52.790	Myotis_lucifugus
ENSDARG00000112579	cmss1	100	48.649	ENSNGAG00000020316	Cmss1	100	47.000	Nannospalax_galili
ENSDARG00000112579	cmss1	100	59.259	ENSNBRG00000003095	cmss1	100	59.864	Neolamprologus_brichardi
ENSDARG00000112579	cmss1	100	47.260	ENSNLEG00000034172	CMSS1	100	46.465	Nomascus_leucogenys
ENSDARG00000112579	cmss1	79	44.444	ENSMEUG00000014505	CMSS1	99	44.206	Notamacropus_eugenii
ENSDARG00000112579	cmss1	100	47.603	ENSOPRG00000002986	CMSS1	100	47.297	Ochotona_princeps
ENSDARG00000112579	cmss1	100	39.384	ENSODEG00000009446	-	78	45.050	Octodon_degus
ENSDARG00000112579	cmss1	100	45.734	ENSODEG00000003558	-	100	44.521	Octodon_degus
ENSDARG00000112579	cmss1	100	41.781	ENSODEG00000001853	-	100	41.017	Octodon_degus
ENSDARG00000112579	cmss1	100	47.279	ENSODEG00000005226	-	100	46.801	Octodon_degus
ENSDARG00000112579	cmss1	76	66.968	ENSONIG00000006678	cmss1	98	60.853	Oreochromis_niloticus
ENSDARG00000112579	cmss1	79	54.310	ENSOANG00000007529	CMSS1	99	51.948	Ornithorhynchus_anatinus
ENSDARG00000112579	cmss1	84	51.220	ENSOCUG00000025366	CMSS1	82	52.381	Oryctolagus_cuniculus
ENSDARG00000112579	cmss1	100	59.044	ENSORLG00000020340	cmss1	100	56.949	Oryzias_latipes
ENSDARG00000112579	cmss1	78	56.828	ENSORLG00020012235	cmss1	86	60.591	Oryzias_latipes_hni
ENSDARG00000112579	cmss1	90	55.805	ENSORLG00015015551	cmss1	76	61.576	Oryzias_latipes_hsok
ENSDARG00000112579	cmss1	100	60.544	ENSOMEG00000012555	cmss1	100	57.770	Oryzias_melastigma
ENSDARG00000112579	cmss1	79	51.293	ENSOGAG00000002045	CMSS1	99	52.381	Otolemur_garnettii
ENSDARG00000112579	cmss1	82	52.720	ENSOARG00000017899	CMSS1	78	53.017	Ovis_aries
ENSDARG00000112579	cmss1	84	50.407	ENSPPAG00000038515	CMSS1	83	52.381	Pan_paniscus
ENSDARG00000112579	cmss1	100	47.603	ENSPPRG00000016767	CMSS1	100	46.333	Panthera_pardus
ENSDARG00000112579	cmss1	100	47.138	ENSPTIG00000018274	CMSS1	100	46.333	Panthera_tigris_altaica
ENSDARG00000112579	cmss1	100	47.797	ENSPTRG00000015157	CMSS1	100	45.667	Pan_troglodytes
ENSDARG00000112579	cmss1	79	52.586	ENSPANG00000019980	CMSS1	90	52.381	Papio_anubis
ENSDARG00000112579	cmss1	93	58.303	ENSPKIG00000012609	cmss1	97	58.052	Paramormyrops_kingsleyae
ENSDARG00000112579	cmss1	79	56.277	ENSPSIG00000003849	CMSS1	99	56.277	Pelodiscus_sinensis
ENSDARG00000112579	cmss1	78	65.789	ENSPMGG00000010286	cmss1	98	65.789	Periophthalmus_magnuspinnatus
ENSDARG00000112579	cmss1	100	48.805	ENSPEMG00000016384	Cmss1	100	47.945	Peromyscus_maniculatus_bairdii
ENSDARG00000112579	cmss1	70	51.471	ENSPMAG00000001146	cmss1	99	51.724	Petromyzon_marinus
ENSDARG00000112579	cmss1	96	48.070	ENSPCIG00000015656	CMSS1	91	48.092	Phascolarctos_cinereus
ENSDARG00000112579	cmss1	100	59.044	ENSPFOG00000016849	cmss1	100	58.020	Poecilia_formosa
ENSDARG00000112579	cmss1	100	58.703	ENSPLAG00000008323	cmss1	100	57.679	Poecilia_latipinna
ENSDARG00000112579	cmss1	100	58.362	ENSPMEG00000021020	cmss1	100	58.362	Poecilia_mexicana
ENSDARG00000112579	cmss1	91	60.674	ENSPREG00000007618	cmss1	87	61.004	Poecilia_reticulata
ENSDARG00000112579	cmss1	100	47.119	ENSPPYG00000013606	CMSS1	100	46.128	Pongo_abelii
ENSDARG00000112579	cmss1	100	47.279	ENSPCOG00000020035	CMSS1	100	46.959	Propithecus_coquereli
ENSDARG00000112579	cmss1	100	41.438	ENSPVAG00000017031	CMSS1	100	41.333	Pteropus_vampyrus
ENSDARG00000112579	cmss1	91	60.148	ENSPNYG00000013428	cmss1	97	60.821	Pundamilia_nyererei
ENSDARG00000112579	cmss1	100	64.765	ENSPNAG00000007912	cmss1	100	63.300	Pygocentrus_nattereri
ENSDARG00000112579	cmss1	79	53.680	ENSRNOG00000027888	Cmss1	88	51.948	Rattus_norvegicus
ENSDARG00000112579	cmss1	100	47.440	ENSRBIG00000037931	CMSS1	100	47.973	Rhinopithecus_bieti
ENSDARG00000112579	cmss1	100	47.440	ENSRROG00000042910	CMSS1	100	47.973	Rhinopithecus_roxellana
ENSDARG00000112579	cmss1	84	50.407	ENSSBOG00000030980	CMSS1	86	52.381	Saimiri_boliviensis_boliviensis
ENSDARG00000112579	cmss1	69	55.446	ENSSHAG00000009321	CMSS1	89	52.814	Sarcophilus_harrisii
ENSDARG00000112579	cmss1	100	63.014	ENSSFOG00015001509	cmss1	100	63.300	Scleropages_formosus
ENSDARG00000112579	cmss1	100	59.589	ENSSMAG00000001653	cmss1	100	58.844	Scophthalmus_maximus
ENSDARG00000112579	cmss1	100	62.329	ENSSDUG00000007719	cmss1	100	62.585	Seriola_dumerili
ENSDARG00000112579	cmss1	71	71.014	ENSSLDG00000012300	cmss1	85	65.566	Seriola_lalandi_dorsalis
ENSDARG00000112579	cmss1	100	39.597	ENSSARG00000003584	CMSS1	100	38.206	Sorex_araneus
ENSDARG00000112579	cmss1	79	53.247	ENSSPUG00000003865	CMSS1	100	52.340	Sphenodon_punctatus
ENSDARG00000112579	cmss1	95	61.594	ENSSPAG00000019182	cmss1	63	72.906	Stegastes_partitus
ENSDARG00000112579	cmss1	100	46.575	ENSSSCG00000011970	CMSS1	100	45.333	Sus_scrofa
ENSDARG00000112579	cmss1	79	52.814	ENSTGUG00000013635	CMSS1	99	53.680	Taeniopygia_guttata
ENSDARG00000112579	cmss1	100	59.932	ENSTRUG00000015265	cmss1	100	59.589	Takifugu_rubripes
ENSDARG00000112579	cmss1	96	57.092	ENSTNIG00000002880	cmss1	94	58.779	Tetraodon_nigroviridis
ENSDARG00000112579	cmss1	100	31.879	ENSTBEG00000016722	CMSS1	81	37.229	Tupaia_belangeri
ENSDARG00000112579	cmss1	100	48.333	ENSTTRG00000001562	CMSS1	100	46.333	Tursiops_truncatus
ENSDARG00000112579	cmss1	84	50.813	ENSUAMG00000024209	CMSS1	91	55.446	Ursus_americanus
ENSDARG00000112579	cmss1	84	50.407	ENSUMAG00000001983	CMSS1	87	51.948	Ursus_maritimus
ENSDARG00000112579	cmss1	55	54.375	ENSVPAG00000000263	CMSS1	57	54.375	Vicugna_pacos
ENSDARG00000112579	cmss1	69	53.960	ENSVVUG00000007776	-	80	53.960	Vulpes_vulpes
ENSDARG00000112579	cmss1	84	50.000	ENSVVUG00000021647	-	92	52.381	Vulpes_vulpes
ENSDARG00000112579	cmss1	100	51.020	ENSXETG00000011858	cmss1	100	49.660	Xenopus_tropicalis
ENSDARG00000112579	cmss1	71	67.308	ENSXCOG00000018724	cmss1	70	67.488	Xiphophorus_couchianus
ENSDARG00000112579	cmss1	71	67.308	ENSXMAG00000011243	cmss1	76	67.488	Xiphophorus_maculatus