EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000113889 (Gene tree)
Gene ID: 795394
Gene Symbol: zgc:174355
Alias: -
Full Name: zgc:174355
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1934 bases
Position: chr11:12435301-12437234
Accession: ZDB-GENE-080214-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000146638	zf-CCHC_2	PF13696.6	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000169324	-	1017	XM_021479959	ENSDARP00000131801	174 (aa)	XP_003199479	A0A0R4IAU7
ENSDART00000183980	-	525	XM_021479957	ENSDARP00000154302	174 (aa)	XP_003199479	A0A0R4IAU7
ENSDART00000190890	-	834	-	ENSDARP00000146638	277 (aa)	-	A0A2R8Q0F2

Gene Model

Click here to download ENSDARG00000113889's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000113889's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000113889	zgc:174355	100	98.921	ENSDARG00000110591	si:dkey-27d5.6	100	98.921
ENSDARG00000113889	zgc:174355	100	98.561	ENSDARG00000088552	si:dkey-23f9.13	100	98.561
ENSDARG00000113889	zgc:174355	100	99.278	ENSDARG00000116389	CR450764.8	100	99.278
ENSDARG00000113889	zgc:174355	100	98.201	ENSDARG00000113994	zgc:174354	100	98.201
ENSDARG00000113889	zgc:174355	100	98.921	ENSDARG00000100754	CR450764.1	100	98.921
ENSDARG00000113889	zgc:174355	100	97.842	ENSDARG00000094335	si:dkey-23f9.12	100	97.842
ENSDARG00000113889	zgc:174355	100	98.921	ENSDARG00000115079	zgc:174353	100	98.921
ENSDARG00000113889	zgc:174355	100	97.842	ENSDARG00000070812	si:ch211-156l18.6	100	97.842
ENSDARG00000113889	zgc:174355	100	98.201	ENSDARG00000112365	zgc:174353	100	98.201
ENSDARG00000113889	zgc:174355	100	98.561	ENSDARG00000111826	zgc:174354	100	98.561
ENSDARG00000113889	zgc:174355	100	96.029	ENSDARG00000094196	si:dkey-27d5.10	100	96.029

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000113889	zgc:174355	81	35.319	WBGene00009477	rbpl-1	51	31.579	Caenorhabditis_elegans
ENSDARG00000113889	zgc:174355	71	36.283	ENSCING00000017248	-	99	34.483	Ciona_intestinalis
ENSDARG00000113889	zgc:174355	69	37.264	ENSCSAVG00000002639	-	100	37.264	Ciona_savignyi
ENSDARG00000113889	zgc:174355	57	45.860	ENSELUG00000017972	-	59	47.967	Esox_lucius
ENSDARG00000113889	zgc:174355	84	50.847	ENSGMOG00000004819	-	99	50.847	Gadus_morhua
ENSDARG00000113889	zgc:174355	50	46.763	ENSGACG00000016781	-	51	47.154	Gasterosteus_aculeatus
ENSDARG00000113889	zgc:174355	80	39.506	ENSLBEG00000021906	-	100	41.004	Labrus_bergylta
ENSDARG00000113889	zgc:174355	51	49.645	ENSONIG00000015704	-	54	51.163	Oreochromis_niloticus
ENSDARG00000113889	zgc:174355	57	44.654	ENSPMGG00000002101	-	53	47.200	Periophthalmus_magnuspinnatus
ENSDARG00000113889	zgc:174355	85	50.413	ENSPFOG00000022154	-	59	50.211	Poecilia_formosa
ENSDARG00000113889	zgc:174355	83	30.038	YKL059C	-	59	30.337	Saccharomyces_cerevisiae
ENSDARG00000113889	zgc:174355	50	49.286	ENSSMAG00000008324	-	54	52.381	Scophthalmus_maximus
ENSDARG00000113889	zgc:174355	51	45.390	ENSTNIG00000005451	-	51	46.341	Tetraodon_nigroviridis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0008150	biological_process	-	ND	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0046872	metal ion binding	-	IEA	Function