EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000113971 (Gene tree)
Gene ID: 100149352
Gene Symbol: LO018181.1
Alias: -
Full Name: gastrula zinc finger protein XlCGF49.1-like
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Plus strand
Length: 10639 bases
Position: chr4:73973242-73983880
Accession: 100149352
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000154870	zf-C2H2	PF00096.26	1.8e-25	1	5
ENSDARP00000154870	zf-C2H2	PF00096.26	1.8e-25	2	5
ENSDARP00000154870	zf-C2H2	PF00096.26	1.8e-25	3	5
ENSDARP00000154870	zf-C2H2	PF00096.26	1.8e-25	4	5
ENSDARP00000154870	zf-C2H2	PF00096.26	1.8e-25	5	5
ENSDARP00000154870	zf-met	PF12874.7	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000182529	LO018181.1-201	3254	XM_021475301	ENSDARP00000154870	238 (aa)	XP_021330976	A0A0G2KC95

Gene Model

Click here to download ENSDARG00000113971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000113971's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000113971	LO018181.1	91	45.872	ENSDARG00000101365	si:cabz01021430.2	99	42.857
ENSDARG00000113971	LO018181.1	95	43.704	ENSDARG00000089598	si:cabz01054396.2	100	44.000
ENSDARG00000113971	LO018181.1	94	48.905	ENSDARG00000101137	znf999	100	41.509

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000113971	LO018181.1	65	36.478	ENSMAMG00000020468	-	50	31.579	Mastacembelus_armatus
ENSDARG00000113971	LO018181.1	61	38.889	ENSNBRG00000019881	-	57	35.965	Neolamprologus_brichardi
ENSDARG00000113971	LO018181.1	59	39.161	ENSOMEG00000005928	-	60	32.243	Oryzias_melastigma
ENSDARG00000113971	LO018181.1	67	37.037	ENSPFOG00000005998	-	50	37.037	Poecilia_formosa