EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSDARG00000113994 (Gene tree)
Gene ID: -
Gene Symbol: zgc:174354
Alias: -
Full Name: zgc:174354
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 1920 bases
Position: chr11:12547191-12549110
Accession: ZDB-GENE-080218-8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000139630	zf-CCHC_2	PF13696.6	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000159158	-	837	-	ENSDARP00000139630	278 (aa)	-	A0A0G2L4E9
ENSDART00000148014	-	1007	-	ENSDARP00000114940	231 (aa)	-	F1QHV5
ENSDART00000179919	-	525	-	ENSDARP00000156995	174 (aa)	-	A0A2R8QTG8

Gene Model

Click here to download ENSDARG00000113994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000113994's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000113994	zgc:174354	100	98.201	ENSDARG00000088552	si:dkey-23f9.13	100	98.201
ENSDARG00000113994	zgc:174354	100	97.842	ENSDARG00000110591	si:dkey-27d5.6	100	97.842
ENSDARG00000113994	zgc:174354	100	98.201	ENSDARG00000111826	zgc:174354	100	98.201
ENSDARG00000113994	zgc:174354	100	94.964	ENSDARG00000094196	si:dkey-27d5.10	100	94.964
ENSDARG00000113994	zgc:174354	100	98.561	ENSDARG00000100754	CR450764.1	100	98.561
ENSDARG00000113994	zgc:174354	100	98.201	ENSDARG00000113889	zgc:174355	100	98.201
ENSDARG00000113994	zgc:174354	100	97.482	ENSDARG00000094335	si:dkey-23f9.12	100	97.482
ENSDARG00000113994	zgc:174354	100	98.201	ENSDARG00000115079	zgc:174353	100	98.201
ENSDARG00000113994	zgc:174354	100	97.482	ENSDARG00000116389	CR450764.8	100	97.482
ENSDARG00000113994	zgc:174354	100	98.201	ENSDARG00000070812	si:ch211-156l18.6	100	98.201
ENSDARG00000113994	zgc:174354	100	98.201	ENSDARG00000112365	zgc:174353	100	98.201

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000113994	zgc:174354	79	35.498	WBGene00009477	rbpl-1	51	31.606	Caenorhabditis_elegans
ENSDARG00000113994	zgc:174354	71	35.841	ENSCING00000017248	-	99	34.052	Ciona_intestinalis
ENSDARG00000113994	zgc:174354	68	36.792	ENSCSAVG00000002639	-	100	36.792	Ciona_savignyi
ENSDARG00000113994	zgc:174354	57	45.570	ENSELUG00000017972	-	59	47.967	Esox_lucius
ENSDARG00000113994	zgc:174354	85	50.211	ENSGMOG00000004819	-	100	50.211	Gadus_morhua
ENSDARG00000113994	zgc:174354	50	46.763	ENSGACG00000016781	-	51	47.154	Gasterosteus_aculeatus
ENSDARG00000113994	zgc:174354	50	46.429	ENSHCOG00000015620	-	57	51.667	Hippocampus_comes
ENSDARG00000113994	zgc:174354	79	38.017	ENSLBEG00000021906	-	100	39.496	Labrus_bergylta
ENSDARG00000113994	zgc:174354	51	46.309	ENSONIG00000015704	-	53	50.000	Oreochromis_niloticus
ENSDARG00000113994	zgc:174354	84	50.622	ENSPFOG00000022154	-	59	49.789	Poecilia_formosa
ENSDARG00000113994	zgc:174354	83	30.075	YKL059C	-	59	30.370	Saccharomyces_cerevisiae
ENSDARG00000113994	zgc:174354	50	49.275	ENSSMAG00000008324	-	54	52.381	Scophthalmus_maximus
ENSDARG00000113994	zgc:174354	53	44.898	ENSTNIG00000005451	-	54	45.736	Tetraodon_nigroviridis