EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSDARG00000116743 (Gene tree)
Gene ID: 327020
Gene Symbol: rnps1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA binding protein S1%2C serine-rich domain
Gene Type: protein_coding
Species: Danio_rerio
Status: putative
Strand: Minus strand
Length: 13249 bases
Position: chr3:9431501-9444749
Accession: 327020
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSDARP00000144842	RRM_1	PF00076.22	5.4e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSDART00000182191	-	2915	-	ENSDARP00000144842	283 (aa)	-	A0A0G2KGY0

Gene Model

Click here to download ENSDARG00000116743's gene model file

Pathways

Pathway ID	Pathway Name	Source
dre03013	RNA transport	KEGG
dre03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSDARG00000116743's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSDARG00000116743	rnps1	100	100.000	ENSDARG00000100188	RNPS1	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSDARG00000116743	rnps1	84	69.710	ENSG00000205937	RNPS1	85	63.750	Homo_sapiens
ENSDARG00000116743	rnps1	83	75.641	ENSAPOG00000017310	RNPS1	74	72.532	Acanthochromis_polyacanthus
ENSDARG00000116743	rnps1	83	61.702	ENSAPOG00000014649	-	83	65.106	Acanthochromis_polyacanthus
ENSDARG00000116743	rnps1	84	69.583	ENSAMEG00000017861	RNPS1	78	63.598	Ailuropoda_melanoleuca
ENSDARG00000116743	rnps1	77	66.514	ENSACIG00000014367	-	77	65.596	Amphilophus_citrinellus
ENSDARG00000116743	rnps1	83	76.068	ENSAOCG00000002404	RNPS1	83	76.068	Amphiprion_ocellaris
ENSDARG00000116743	rnps1	82	75.966	ENSAPEG00000006497	RNPS1	80	75.966	Amphiprion_percula
ENSDARG00000116743	rnps1	83	76.496	ENSATEG00000024267	RNPS1	83	76.496	Anabas_testudineus
ENSDARG00000116743	rnps1	84	54.812	ENSAPLG00000006231	RNPS1	54	82.906	Anas_platyrhynchos
ENSDARG00000116743	rnps1	77	67.273	ENSANAG00000029802	-	84	59.361	Aotus_nancymaae
ENSDARG00000116743	rnps1	84	69.295	ENSANAG00000028802	RNPS1	85	63.333	Aotus_nancymaae
ENSDARG00000116743	rnps1	83	73.504	ENSACLG00000025942	RNPS1	82	70.940	Astatotilapia_calliptera
ENSDARG00000116743	rnps1	83	89.076	ENSAMXG00000037447	RNPS1	73	89.076	Astyanax_mexicanus
ENSDARG00000116743	rnps1	83	74.786	ENSAMXG00000006330	-	82	69.658	Astyanax_mexicanus
ENSDARG00000116743	rnps1	86	69.262	ENSBTAG00000009969	RNPS1	86	63.374	Bos_taurus
ENSDARG00000116743	rnps1	84	69.710	ENSCJAG00000014969	RNPS1	90	59.346	Callithrix_jacchus
ENSDARG00000116743	rnps1	84	69.583	ENSCAFG00000019397	RNPS1	78	63.598	Canis_familiaris
ENSDARG00000116743	rnps1	84	69.583	ENSCAFG00020026159	RNPS1	86	60.199	Canis_lupus_dingo
ENSDARG00000116743	rnps1	76	66.820	ENSTSYG00000031848	-	88	66.204	Carlito_syrichta
ENSDARG00000116743	rnps1	84	69.710	ENSTSYG00000001629	RNPS1	85	63.750	Carlito_syrichta
ENSDARG00000116743	rnps1	84	69.583	ENSCAPG00000007731	RNPS1	78	63.598	Cavia_aperea
ENSDARG00000116743	rnps1	84	69.710	ENSCPOG00000002066	RNPS1	85	63.750	Cavia_porcellus
ENSDARG00000116743	rnps1	84	69.295	ENSCCAG00000034480	RNPS1	85	63.333	Cebus_capucinus
ENSDARG00000116743	rnps1	84	69.710	ENSCATG00000013756	RNPS1	85	63.750	Cercocebus_atys
ENSDARG00000116743	rnps1	93	65.152	ENSCATG00000042361	-	57	78.632	Cercocebus_atys
ENSDARG00000116743	rnps1	84	69.710	ENSCLAG00000015546	RNPS1	85	63.750	Chinchilla_lanigera
ENSDARG00000116743	rnps1	97	72.826	ENSCSAG00000005219	-	81	66.667	Chlorocebus_sabaeus
ENSDARG00000116743	rnps1	84	69.167	ENSCHOG00000004866	RNPS1	78	63.180	Choloepus_hoffmanni
ENSDARG00000116743	rnps1	76	51.163	ENSCPBG00000000214	RNPS1	74	51.613	Chrysemys_picta_bellii
ENSDARG00000116743	rnps1	84	69.710	ENSCANG00000041307	RNPS1	85	63.750	Colobus_angolensis_palliatus
ENSDARG00000116743	rnps1	84	69.710	ENSCGRG00001020431	Rnps1	85	63.750	Cricetulus_griseus_chok1gshd
ENSDARG00000116743	rnps1	76	69.266	ENSCGRG00000014021	Rnps1	77	62.673	Cricetulus_griseus_crigri
ENSDARG00000116743	rnps1	82	70.815	ENSCSEG00000015997	RNPS1	80	70.815	Cynoglossus_semilaevis
ENSDARG00000116743	rnps1	82	65.812	ENSCSEG00000000402	RNPS1	76	65.385	Cynoglossus_semilaevis
ENSDARG00000116743	rnps1	77	75.342	ENSCVAG00000010868	RNPS1	77	72.603	Cyprinodon_variegatus
ENSDARG00000116743	rnps1	84	69.583	ENSDNOG00000016081	RNPS1	78	63.598	Dasypus_novemcinctus
ENSDARG00000116743	rnps1	69	57.653	ENSDNOG00000038751	-	97	55.385	Dasypus_novemcinctus
ENSDARG00000116743	rnps1	84	69.295	ENSDORG00000001755	Rnps1	85	63.333	Dipodomys_ordii
ENSDARG00000116743	rnps1	84	69.583	ENSEASG00005004862	RNPS1	78	63.598	Equus_asinus_asinus
ENSDARG00000116743	rnps1	84	69.295	ENSFCAG00000007690	RNPS1	85	63.333	Felis_catus
ENSDARG00000116743	rnps1	84	71.667	ENSFALG00000004868	RNPS1	84	64.854	Ficedula_albicollis
ENSDARG00000116743	rnps1	84	69.710	ENSFDAG00000003386	RNPS1	85	63.750	Fukomys_damarensis
ENSDARG00000116743	rnps1	77	72.603	ENSFHEG00000011705	RNPS1	77	72.603	Fundulus_heteroclitus
ENSDARG00000116743	rnps1	84	71.784	ENSGALG00000009288	RNPS1	85	65.833	Gallus_gallus
ENSDARG00000116743	rnps1	77	72.603	ENSGAFG00000005457	RNPS1	77	69.863	Gambusia_affinis
ENSDARG00000116743	rnps1	84	70.833	ENSGAGG00000010452	RNPS1	78	64.854	Gopherus_agassizii
ENSDARG00000116743	rnps1	81	62.174	ENSGGOG00000026421	-	79	58.937	Gorilla_gorilla
ENSDARG00000116743	rnps1	84	69.710	ENSGGOG00000014275	RNPS1	85	63.750	Gorilla_gorilla
ENSDARG00000116743	rnps1	83	73.077	ENSHBUG00000002494	RNPS1	82	70.513	Haplochromis_burtoni
ENSDARG00000116743	rnps1	79	67.556	ENSHGLG00000006292	-	88	61.751	Heterocephalus_glaber_female
ENSDARG00000116743	rnps1	84	69.710	ENSHGLG00000013957	RNPS1	85	63.750	Heterocephalus_glaber_female
ENSDARG00000116743	rnps1	84	69.710	ENSHGLG00100003539	RNPS1	85	63.750	Heterocephalus_glaber_male
ENSDARG00000116743	rnps1	92	68.966	ENSHGLG00100015267	-	78	58.065	Heterocephalus_glaber_male
ENSDARG00000116743	rnps1	76	60.274	ENSHGLG00100017879	-	71	50.459	Heterocephalus_glaber_male
ENSDARG00000116743	rnps1	84	69.710	ENSJJAG00000015576	-	85	63.750	Jaculus_jaculus
ENSDARG00000116743	rnps1	83	73.077	ENSKMAG00000009135	RNPS1	82	68.803	Kryptolebias_marmoratus
ENSDARG00000116743	rnps1	84	69.710	ENSMFAG00000042142	RNPS1	85	63.750	Macaca_fascicularis
ENSDARG00000116743	rnps1	71	66.995	ENSMMUG00000019238	-	79	60.591	Macaca_mulatta
ENSDARG00000116743	rnps1	86	68.571	ENSMMUG00000041726	-	84	78.632	Macaca_mulatta
ENSDARG00000116743	rnps1	86	68.980	ENSMNEG00000024827	-	84	78.632	Macaca_nemestrina
ENSDARG00000116743	rnps1	84	69.710	ENSMLEG00000036928	RNPS1	85	63.750	Mandrillus_leucophaeus
ENSDARG00000116743	rnps1	82	70.513	ENSMAMG00000021148	-	81	63.675	Mastacembelus_armatus
ENSDARG00000116743	rnps1	83	75.641	ENSMAMG00000021609	-	83	75.641	Mastacembelus_armatus
ENSDARG00000116743	rnps1	83	73.504	ENSMZEG00005012742	RNPS1	82	70.940	Maylandia_zebra
ENSDARG00000116743	rnps1	77	70.776	ENSMGAG00000010042	RNPS1	90	64.220	Meleagris_gallopavo
ENSDARG00000116743	rnps1	84	70.124	ENSMICG00000031543	RNPS1	85	64.167	Microcebus_murinus
ENSDARG00000116743	rnps1	84	69.710	ENSMOCG00000003429	Rnps1	85	63.750	Microtus_ochrogaster
ENSDARG00000116743	rnps1	76	65.278	ENSMMOG00000010863	RNPS1	77	62.844	Mola_mola
ENSDARG00000116743	rnps1	84	69.710	ENSMUSG00000034681	Rnps1	85	63.750	Mus_musculus
ENSDARG00000116743	rnps1	84	69.710	MGP_PahariEiJ_G0023498	Rnps1	85	63.750	Mus_pahari
ENSDARG00000116743	rnps1	84	69.710	MGP_SPRETEiJ_G0022092	Rnps1	85	63.750	Mus_spretus
ENSDARG00000116743	rnps1	84	69.583	ENSMLUG00000016808	RNPS1	78	63.598	Myotis_lucifugus
ENSDARG00000116743	rnps1	84	69.710	ENSNGAG00000023702	Rnps1	85	63.750	Nannospalax_galili
ENSDARG00000116743	rnps1	77	64.679	ENSNBRG00000023437	RNPS1	77	62.844	Neolamprologus_brichardi
ENSDARG00000116743	rnps1	88	67.871	ENSNLEG00000009243	RNPS1	98	61.885	Nomascus_leucogenys
ENSDARG00000116743	rnps1	84	69.583	ENSMEUG00000008882	RNPS1	78	63.598	Notamacropus_eugenii
ENSDARG00000116743	rnps1	84	70.000	ENSOPRG00000016422	RNPS1	78	69.456	Ochotona_princeps
ENSDARG00000116743	rnps1	83	66.667	ENSORLG00000008033	RNPS1	95	67.633	Oryzias_latipes
ENSDARG00000116743	rnps1	72	67.317	ENSPPAG00000037836	-	86	59.804	Pan_paniscus
ENSDARG00000116743	rnps1	87	65.992	ENSPPAG00000011845	RNPS1	86	58.750	Pan_paniscus
ENSDARG00000116743	rnps1	84	69.295	ENSPPRG00000011255	RNPS1	85	63.333	Panthera_pardus
ENSDARG00000116743	rnps1	50	74.648	ENSPTIG00000015643	RNPS1	62	81.197	Panthera_tigris_altaica
ENSDARG00000116743	rnps1	84	69.710	ENSPTRG00000031310	RNPS1	85	63.750	Pan_troglodytes
ENSDARG00000116743	rnps1	73	65.700	ENSPTRG00000046326	-	81	58.937	Pan_troglodytes
ENSDARG00000116743	rnps1	84	69.710	ENSPANG00000015748	RNPS1	85	63.750	Papio_anubis
ENSDARG00000116743	rnps1	83	73.191	ENSPKIG00000023465	RNPS1	83	70.339	Paramormyrops_kingsleyae
ENSDARG00000116743	rnps1	84	69.710	ENSPEMG00000012797	Rnps1	85	63.750	Peromyscus_maniculatus_bairdii
ENSDARG00000116743	rnps1	84	69.710	ENSPCIG00000025012	RNPS1	85	63.750	Phascolarctos_cinereus
ENSDARG00000116743	rnps1	51	75.862	ENSPCIG00000016114	-	57	80.342	Phascolarctos_cinereus
ENSDARG00000116743	rnps1	77	73.516	ENSPFOG00000009978	RNPS1	77	70.776	Poecilia_formosa
ENSDARG00000116743	rnps1	77	73.516	ENSPLAG00000009343	RNPS1	77	70.776	Poecilia_latipinna
ENSDARG00000116743	rnps1	77	73.516	ENSPMEG00000008552	RNPS1	77	70.776	Poecilia_mexicana
ENSDARG00000116743	rnps1	77	73.516	ENSPREG00000001843	RNPS1	77	70.776	Poecilia_reticulata
ENSDARG00000116743	rnps1	84	68.750	ENSPCAG00000004514	RNPS1	78	63.180	Procavia_capensis
ENSDARG00000116743	rnps1	84	70.124	ENSPCOG00000005478	RNPS1	85	64.167	Propithecus_coquereli
ENSDARG00000116743	rnps1	84	69.583	ENSPVAG00000005105	RNPS1	78	63.598	Pteropus_vampyrus
ENSDARG00000116743	rnps1	83	73.504	ENSPNYG00000000585	RNPS1	82	70.940	Pundamilia_nyererei
ENSDARG00000116743	rnps1	83	74.786	ENSPNAG00000025479	RNPS1	82	69.658	Pygocentrus_nattereri
ENSDARG00000116743	rnps1	84	69.583	ENSRNOG00000008703	Rnps1	78	63.598	Rattus_norvegicus
ENSDARG00000116743	rnps1	84	69.710	ENSRBIG00000038965	-	88	63.598	Rhinopithecus_bieti
ENSDARG00000116743	rnps1	84	69.710	ENSRROG00000041252	RNPS1	85	63.750	Rhinopithecus_roxellana
ENSDARG00000116743	rnps1	84	69.710	ENSSBOG00000027927	RNPS1	85	63.750	Saimiri_boliviensis_boliviensis
ENSDARG00000116743	rnps1	84	69.583	ENSSHAG00000016951	RNPS1	78	63.598	Sarcophilus_harrisii
ENSDARG00000116743	rnps1	82	79.399	ENSSFOG00015019341	-	73	72.103	Scleropages_formosus
ENSDARG00000116743	rnps1	83	72.340	ENSSFOG00015022746	RNPS1	85	71.064	Scleropages_formosus
ENSDARG00000116743	rnps1	83	75.641	ENSSDUG00000011453	RNPS1	83	75.641	Seriola_dumerili
ENSDARG00000116743	rnps1	79	73.661	ENSSLDG00000021341	RNPS1	80	71.171	Seriola_lalandi_dorsalis
ENSDARG00000116743	rnps1	84	70.833	ENSSPUG00000016588	RNPS1	78	64.854	Sphenodon_punctatus
ENSDARG00000116743	rnps1	84	70.000	ENSSSCG00000008048	RNPS1	78	64.017	Sus_scrofa
ENSDARG00000116743	rnps1	84	72.083	ENSTGUG00000003237	RNPS1	84	65.272	Taeniopygia_guttata
ENSDARG00000116743	rnps1	82	71.064	ENSTNIG00000009753	RNPS1	81	72.766	Tetraodon_nigroviridis
ENSDARG00000116743	rnps1	87	70.281	ENSTBEG00000009098	RNPS1	88	63.598	Tupaia_belangeri
ENSDARG00000116743	rnps1	84	69.583	ENSTTRG00000008220	RNPS1	78	63.598	Tursiops_truncatus
ENSDARG00000116743	rnps1	84	69.583	ENSUAMG00000004462	RNPS1	88	63.598	Ursus_americanus
ENSDARG00000116743	rnps1	84	69.583	ENSUMAG00000022327	RNPS1	78	63.598	Ursus_maritimus
ENSDARG00000116743	rnps1	84	69.583	ENSVVUG00000009244	RNPS1	78	63.598	Vulpes_vulpes
ENSDARG00000116743	rnps1	80	66.667	ENSXETG00000024439	rnps1	70	67.281	Xenopus_tropicalis
ENSDARG00000116743	rnps1	83	70.513	ENSXMAG00000004827	RNPS1	82	66.239	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0061574	ASAP complex	21873635.	IBA	Component